Wall clock time and date at job start Mon Mar 30 2020 04:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00199 * 2 1 4 4 H 1.48489 * 109.47324 * 270.00193 * 3 2 1 5 5 H 1.48503 * 109.46767 * 30.00386 * 3 2 1 6 6 H 1.48501 * 109.47133 * 149.99884 * 3 2 1 7 7 C 1.37880 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00173 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99807 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.48784 * 300.02880 * 9 7 2 11 11 C 1.53091 * 109.48010 * 179.97438 * 9 7 2 12 12 C 1.53176 * 109.21206 * 182.43847 * 11 9 7 13 13 C 1.53174 * 109.03724 * 56.94941 * 12 11 9 14 14 C 1.53084 * 109.16456 * 303.01556 * 13 12 11 15 15 H 1.08997 * 109.48095 * 297.62758 * 14 13 12 16 16 C 1.50703 * 109.48277 * 177.60348 * 14 13 12 17 17 C 1.31735 * 126.52246 * 114.71297 * 16 14 13 18 18 C 1.49578 * 116.78396 * 180.02562 * 17 16 14 19 19 N 1.48303 * 110.75725 * 340.81433 * 18 17 16 20 20 S 1.77526 * 126.52449 * 295.02637 * 16 14 13 21 21 O 1.42906 * 109.41372 * 57.61236 * 14 13 12 22 22 H 0.97006 * 120.00117 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.52401 * 62.50000 * 11 9 7 24 24 H 1.09004 * 109.52068 * 302.37645 * 11 9 7 25 25 H 1.09004 * 109.53956 * 176.81728 * 12 11 9 26 26 H 1.08995 * 109.54545 * 297.07504 * 12 11 9 27 27 H 1.09007 * 109.52410 * 62.92341 * 13 12 11 28 28 H 1.09000 * 109.52423 * 183.04692 * 13 12 11 29 29 H 1.08003 * 121.60912 * 0.24688 * 17 16 14 30 30 H 1.09000 * 109.38955 * 220.34541 * 18 17 16 31 31 H 1.09004 * 108.95471 * 101.00376 * 18 17 16 32 32 H 1.00903 * 111.00246 * 269.10259 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8754 -0.6793 -0.8891 11 6 4.0220 -2.6374 -0.0001 12 6 5.5524 -2.6308 0.0621 13 6 5.9986 -1.8565 1.3061 14 6 5.4132 -0.4429 1.2550 15 1 5.8030 0.0806 0.3821 16 6 5.7991 0.3064 2.5043 17 6 6.5780 1.3665 2.5736 18 6 6.8179 1.9390 3.9345 19 7 5.7771 1.4828 4.8875 20 16 5.2969 -0.0762 4.1635 21 8 3.9890 -0.5215 1.1671 22 1 -0.4850 0.8401 0.0004 23 1 3.6966 -3.1389 -0.9116 24 1 3.6244 -3.1645 0.8673 25 1 5.9195 -3.6556 0.1192 26 1 5.9515 -2.1485 -0.8302 27 1 5.6410 -2.3668 2.2005 28 1 7.0869 -1.8003 1.3294 29 1 7.0192 1.8035 1.6899 30 1 6.8005 3.0273 3.8775 31 1 7.7963 1.6136 4.2881 32 1 5.0002 2.1262 4.9098 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725628932.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:30 Heat of formation + Delta-G solvation = -38.257167 kcal Electronic energy + Delta-G solvation = -15735.867464 eV Core-core repulsion = 13208.188365 eV Total energy + Delta-G solvation = -2527.679099 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.30502 -38.03401 -35.08249 -34.34855 -33.55495 -31.11214 -28.02694 -26.54399 -24.44695 -23.27279 -21.38144 -20.65549 -19.06227 -18.45336 -17.38671 -17.00232 -16.46331 -15.95500 -15.78572 -15.41106 -14.91442 -14.57545 -14.27647 -14.15180 -13.62447 -13.37243 -12.96069 -12.76116 -12.42456 -12.08882 -11.93950 -11.81282 -11.59569 -11.40486 -11.20754 -11.01790 -10.81953 -10.69940 -9.83411 -8.49763 -8.36916 -6.49418 0.52326 0.74682 1.05968 1.33675 1.37950 1.63439 2.40420 2.82234 3.29307 3.49662 3.83500 4.00480 4.04308 4.15511 4.26854 4.35290 4.38419 4.47216 4.52430 4.71063 4.85851 4.91543 4.97943 5.07134 5.15244 5.22773 5.27643 5.45762 5.53335 5.58047 6.21962 6.53548 6.83835 7.27208 8.77273 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.022431 B = 0.010325 C = 0.008208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.986558 B = 2711.198193 C = 3410.390182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.025 3.975 3 Si 0.940 3.060 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.208 1.208 7 C -0.527 4.527 8 H 0.040 0.960 9 C 0.189 3.811 10 H 0.019 0.981 11 C -0.133 4.133 12 C -0.113 4.113 13 C -0.133 4.133 14 C 0.139 3.861 15 H 0.072 0.928 16 C -0.126 4.126 17 C -0.192 4.192 18 C 0.052 3.948 19 N -0.578 5.578 20 S -0.022 6.022 21 O -0.390 6.390 22 H 0.267 0.733 23 H 0.065 0.935 24 H 0.044 0.956 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.169 0.831 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.194 3.875 4.081 19.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.174 4.174 3 Si 0.764 3.236 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.130 1.130 7 C -0.564 4.564 8 H 0.058 0.942 9 C 0.133 3.867 10 H 0.036 0.964 11 C -0.171 4.171 12 C -0.150 4.150 13 C -0.171 4.171 14 C 0.079 3.921 15 H 0.090 0.910 16 C -0.240 4.240 17 C -0.223 4.223 18 C -0.078 4.078 19 N -0.297 5.297 20 S 0.106 5.894 21 O -0.311 6.311 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.113 0.887 29 H 0.186 0.814 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 17.888 3.017 5.565 18.975 hybrid contribution -0.634 1.632 -1.601 2.373 sum 17.253 4.649 3.963 18.303 Atomic orbital electron populations 1.70070 1.08512 1.28421 1.50835 1.25984 0.95396 1.03820 0.92204 0.85965 0.81959 0.77235 0.78426 1.20225 1.22481 1.13050 1.21242 0.90397 0.93354 1.51363 0.94219 1.19956 0.92150 0.90293 0.84297 0.96391 1.21991 0.96349 0.97476 1.01305 1.21615 0.94236 1.01374 0.97807 1.22080 1.01530 0.94539 0.98911 1.20448 0.84488 0.95098 0.92076 0.90988 1.24362 1.02180 0.99979 0.97451 1.24022 1.00456 0.96665 1.01187 1.21952 0.97036 1.02817 0.85970 1.67240 1.15021 1.05609 1.41830 1.87086 1.82511 1.19267 1.00570 1.88386 1.18184 1.77739 1.46754 0.92405 0.91597 0.93684 0.89680 0.90699 0.92597 0.88733 0.81382 0.85925 0.85760 0.82710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.00 13.96 21.45 0.30 -59.70 16 2 C 0.03 1.53 5.47 84.66 0.46 1.99 16 3 Si 0.94 45.63 26.99 68.60 1.85 47.49 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.21 -9.44 5.17 99.48 0.51 -8.92 16 7 C -0.53 -31.01 9.38 25.60 0.24 -30.77 16 8 H 0.04 2.57 7.99 -2.91 -0.02 2.54 16 9 C 0.19 8.89 1.99 29.88 0.06 8.95 16 10 H 0.02 0.84 7.57 -2.39 -0.02 0.83 16 11 C -0.13 -5.25 5.35 30.68 0.16 -5.09 16 12 C -0.11 -3.29 6.03 30.71 0.19 -3.10 16 13 C -0.13 -3.92 5.40 30.68 0.17 -3.76 16 14 C 0.14 4.77 2.96 29.88 0.09 4.86 16 15 H 0.07 2.27 8.11 -2.39 -0.02 2.25 16 16 C -0.13 -3.93 5.53 24.97 0.14 -3.79 16 17 C -0.19 -4.48 10.30 24.62 0.25 -4.23 16 18 C 0.05 0.98 7.04 84.94 0.60 1.58 16 19 N -0.58 -14.41 8.34 -188.73 -1.57 -15.98 16 20 S -0.02 -0.73 23.85 -56.49 -1.35 -2.08 16 21 O -0.39 -17.69 6.93 -148.98 -1.03 -18.73 16 22 H 0.27 15.96 8.31 -92.70 -0.77 15.19 16 23 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 24 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 25 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 26 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.36 8.24 9.00 -91.19 -0.82 7.42 16 Total: -1.00 -70.65 273.07 0.65 -70.00 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.10 Total: 12.36 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 2.36 Total: -33.35 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -1.27 Total: -75.68 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -1.03 Total: -18.73 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.85 Total: 47.49 kcal Atomic # 16 Polarization: -0.73 SS G_CDS: -1.35 Total: -2.08 kcal Total: -70.65 0.65 -70.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725628932.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.739 kcal (2) G-P(sol) polarization free energy of solvation -70.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds