Wall clock time and date at job start Mon Mar 30 2020 04:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09004 * 109.47811 * 60.25709 * 9 7 2 11 11 C 1.53091 * 109.47975 * 180.27932 * 9 7 2 12 12 C 1.53174 * 109.16624 * 62.37646 * 11 9 7 13 13 C 1.53177 * 109.03306 * 56.98024 * 12 11 9 14 14 C 1.53093 * 109.16477 * 303.02030 * 13 12 11 15 15 H 1.09004 * 109.47917 * 297.62756 * 14 13 12 16 16 C 1.50703 * 109.48233 * 177.60374 * 14 13 12 17 17 C 1.31733 * 126.52254 * 114.71402 * 16 14 13 18 18 C 1.49579 * 116.78292 * 180.02562 * 17 16 14 19 19 N 1.48306 * 110.76136 * 340.81052 * 18 17 16 20 20 S 1.77529 * 126.52195 * 295.02598 * 16 14 13 21 21 O 1.42902 * 109.48423 * 300.22572 * 9 7 2 22 22 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 23 23 H 1.09009 * 109.52234 * 182.28773 * 11 9 7 24 24 H 1.09004 * 109.52373 * 302.40786 * 11 9 7 25 25 H 1.08994 * 109.54658 * 176.84470 * 12 11 9 26 26 H 1.08998 * 109.54145 * 297.11583 * 12 11 9 27 27 H 1.09004 * 109.52703 * 62.92923 * 13 12 11 28 28 H 1.09004 * 109.52293 * 183.05304 * 13 12 11 29 29 H 1.08004 * 121.61027 * 0.24011 * 17 16 14 30 30 H 1.09004 * 109.38364 * 220.34492 * 18 17 16 31 31 H 1.09005 * 109.02493 * 101.04580 * 18 17 16 32 32 H 1.00893 * 111.00342 * 145.00200 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6240 -2.5608 -0.8841 11 6 2.2459 -3.6628 0.0105 12 6 3.0827 -3.6034 1.2921 13 6 2.1449 -3.6349 2.5029 14 6 1.1541 -2.4722 2.4015 15 1 1.6978 -1.5279 2.4287 16 6 0.1904 -2.5307 3.5587 17 6 0.0776 -1.6485 4.5304 18 6 -0.9575 -1.9242 5.5744 19 7 -1.9613 -2.8954 5.0758 20 16 -1.0035 -3.8058 3.8759 21 8 0.4305 -2.5704 1.1731 22 1 -0.4850 0.8400 0.0004 23 1 1.7022 -4.6069 -0.0262 24 1 2.9010 -3.5858 -0.8573 25 1 3.7545 -4.4609 1.3290 26 1 3.6644 -2.6818 1.3053 27 1 1.5992 -4.5784 2.5167 28 1 2.7287 -3.5384 3.4183 29 1 0.7001 -0.7667 4.5695 30 1 -1.4593 -0.9939 5.8409 31 1 -0.4698 -2.3338 6.4589 32 1 -2.2792 -3.5001 5.8182 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725628934.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:38 Heat of formation + Delta-G solvation = -18.490764 kcal Electronic energy + Delta-G solvation = -15852.454359 eV Core-core repulsion = 13325.632396 eV Total energy + Delta-G solvation = -2526.821963 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -38.38001 -36.57656 -32.91195 -32.41179 -31.74319 -29.24312 -25.99558 -24.92344 -22.75555 -21.94777 -19.69877 -18.93624 -17.22935 -16.27722 -15.48557 -15.03417 -14.62286 -14.59932 -13.94505 -13.60248 -13.29402 -12.76420 -12.72984 -12.26342 -11.81517 -11.46894 -11.27756 -10.92435 -10.78449 -10.69095 -10.32717 -10.23362 -9.90628 -9.79233 -9.66066 -9.45994 -8.72300 -8.46233 -7.81212 -6.85067 -5.99290 -4.16076 1.86952 2.17686 2.47270 3.26924 3.33773 3.34782 4.38233 4.54430 4.89964 5.14997 5.29067 5.56115 5.57807 5.69845 5.71371 5.88165 6.08242 6.16739 6.32006 6.35185 6.46342 6.54617 6.63622 6.73248 6.89050 6.91255 7.02015 7.09145 7.67570 7.85794 8.19161 8.79422 9.04069 9.56194 11.04358 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.023950 B = 0.009555 C = 0.007860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.804910 B = 2929.697027 C = 3561.702700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.080 3.920 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.563 4.563 8 H 0.057 0.943 9 C 0.212 3.788 10 H 0.064 0.936 11 C -0.143 4.143 12 C -0.108 4.108 13 C -0.139 4.139 14 C 0.169 3.831 15 H 0.082 0.918 16 C -0.051 4.051 17 C -0.206 4.206 18 C 0.058 3.942 19 N -0.596 5.596 20 S 0.001 5.999 21 O -0.357 6.357 22 H 0.261 0.739 23 H 0.042 0.958 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.145 0.855 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.607 -5.162 9.532 10.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.127 4.127 3 Si 0.709 3.291 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.601 4.601 8 H 0.076 0.924 9 C 0.156 3.844 10 H 0.082 0.918 11 C -0.181 4.181 12 C -0.145 4.145 13 C -0.177 4.177 14 C 0.108 3.892 15 H 0.100 0.900 16 C -0.165 4.165 17 C -0.237 4.237 18 C -0.072 4.072 19 N -0.318 5.318 20 S 0.130 5.870 21 O -0.276 6.276 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.163 0.837 30 H 0.118 0.882 31 H 0.077 0.923 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.412 -5.708 8.813 10.508 hybrid contribution 1.546 1.779 1.025 2.570 sum 1.958 -3.929 9.838 10.773 Atomic orbital electron populations 1.70051 1.05775 1.26559 1.46497 1.25043 0.94644 0.98893 0.94096 0.86850 0.79850 0.83689 0.78736 1.20096 1.21203 1.20225 1.21506 0.93106 0.91105 1.54367 0.92437 1.19756 0.88697 0.90998 0.84954 0.91802 1.22194 0.99273 0.99785 0.96854 1.21433 0.97287 1.00968 0.94817 1.22132 0.98109 0.99194 0.98239 1.19950 0.88234 0.97863 0.83141 0.90048 1.24259 0.98498 0.95599 0.98115 1.23017 1.02273 1.01833 0.96561 1.21616 0.91159 0.97644 0.96814 1.67100 1.30889 1.15563 1.18222 1.86087 1.31072 1.20523 1.49331 1.88031 1.34300 1.93463 1.11809 0.92862 0.93897 0.92393 0.93771 0.91177 0.92340 0.92545 0.83735 0.88195 0.92256 0.82593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.79 12.84 55.43 0.71 -24.08 16 2 C 0.08 2.18 5.40 -17.82 -0.10 2.08 16 3 Si 0.88 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.56 -14.92 6.59 -34.44 -0.23 -15.14 16 8 H 0.06 1.49 6.87 -52.49 -0.36 1.13 16 9 C 0.21 5.33 3.16 -27.84 -0.09 5.24 16 10 H 0.06 1.75 8.14 -51.93 -0.42 1.33 16 11 C -0.14 -2.98 5.59 -26.59 -0.15 -3.13 16 12 C -0.11 -2.02 5.78 -26.55 -0.15 -2.17 16 13 C -0.14 -2.60 5.40 -26.59 -0.14 -2.74 16 14 C 0.17 3.70 2.86 -27.83 -0.08 3.62 16 15 H 0.08 1.94 7.05 -51.93 -0.37 1.58 16 16 C -0.05 -1.02 5.53 -36.19 -0.20 -1.22 16 17 C -0.21 -3.57 10.30 -36.73 -0.38 -3.95 16 18 C 0.06 0.82 7.04 -4.74 -0.03 0.78 16 19 N -0.60 -9.12 8.34 -11.00 -0.09 -9.21 16 20 S 0.00 0.02 23.85 -107.50 -2.56 -2.54 16 21 O -0.36 -9.17 9.61 -35.23 -0.34 -9.51 16 22 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 23 H 0.04 0.85 8.14 -51.92 -0.42 0.42 16 24 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 1.38 6.85 -51.93 -0.36 1.02 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.15 2.34 8.06 -52.48 -0.42 1.91 16 30 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.36 4.20 9.00 -36.91 -0.33 3.87 16 LS Contribution 274.43 15.07 4.14 4.14 Total: -1.00 -29.87 274.43 -9.07 -38.94 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -4.35 Total: 3.13 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -1.55 Total: -16.61 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.62 Total: -33.29 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.34 Total: -9.51 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -2.56 Total: -2.54 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.87 -9.07 -38.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725628934.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.448 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds