Wall clock time and date at job start Mon Mar 30 2020 04:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09004 * 109.47811 * 60.25709 * 9 7 2 11 11 C 1.53091 * 109.47975 * 180.27932 * 9 7 2 12 12 C 1.53174 * 109.16624 * 62.37646 * 11 9 7 13 13 C 1.53177 * 109.03306 * 56.98024 * 12 11 9 14 14 C 1.53093 * 109.16477 * 303.02030 * 13 12 11 15 15 H 1.09004 * 109.47917 * 297.62756 * 14 13 12 16 16 C 1.50703 * 109.48233 * 177.60374 * 14 13 12 17 17 C 1.31733 * 126.52254 * 114.71402 * 16 14 13 18 18 C 1.49579 * 116.78292 * 180.02562 * 17 16 14 19 19 N 1.48306 * 110.76136 * 340.81052 * 18 17 16 20 20 S 1.77529 * 126.52195 * 295.02598 * 16 14 13 21 21 O 1.42902 * 109.48423 * 300.22572 * 9 7 2 22 22 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 23 23 H 1.09009 * 109.52234 * 182.28773 * 11 9 7 24 24 H 1.09004 * 109.52373 * 302.40786 * 11 9 7 25 25 H 1.08994 * 109.54658 * 176.84470 * 12 11 9 26 26 H 1.08998 * 109.54145 * 297.11583 * 12 11 9 27 27 H 1.09004 * 109.52703 * 62.92923 * 13 12 11 28 28 H 1.09004 * 109.52293 * 183.05304 * 13 12 11 29 29 H 1.08004 * 121.61027 * 0.24011 * 17 16 14 30 30 H 1.09004 * 109.38364 * 220.34492 * 18 17 16 31 31 H 1.09005 * 109.02493 * 101.04580 * 18 17 16 32 32 H 1.00893 * 111.00342 * 145.00200 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6240 -2.5608 -0.8841 11 6 2.2459 -3.6628 0.0105 12 6 3.0827 -3.6034 1.2921 13 6 2.1449 -3.6349 2.5029 14 6 1.1541 -2.4722 2.4015 15 1 1.6978 -1.5279 2.4287 16 6 0.1904 -2.5307 3.5587 17 6 0.0776 -1.6485 4.5304 18 6 -0.9575 -1.9242 5.5744 19 7 -1.9613 -2.8954 5.0758 20 16 -1.0035 -3.8058 3.8759 21 8 0.4305 -2.5704 1.1731 22 1 -0.4850 0.8400 0.0004 23 1 1.7022 -4.6069 -0.0262 24 1 2.9010 -3.5858 -0.8573 25 1 3.7545 -4.4609 1.3290 26 1 3.6644 -2.6818 1.3053 27 1 1.5992 -4.5784 2.5167 28 1 2.7287 -3.5384 3.4183 29 1 0.7001 -0.7667 4.5695 30 1 -1.4593 -0.9939 5.8409 31 1 -0.4698 -2.3338 6.4589 32 1 -2.2792 -3.5001 5.8182 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725628934.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:36 Heat of formation + Delta-G solvation = -38.072520 kcal Electronic energy + Delta-G solvation = -15853.303488 eV Core-core repulsion = 13325.632396 eV Total energy + Delta-G solvation = -2527.671092 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.10340 -37.88609 -34.77137 -34.09312 -33.43667 -30.83583 -27.79678 -26.44771 -24.37771 -23.61305 -21.16419 -20.59875 -18.75476 -18.12485 -16.78444 -16.71321 -16.36909 -16.22426 -15.54467 -15.25711 -14.83674 -14.45248 -14.12447 -13.65842 -13.57739 -13.02684 -12.99636 -12.75825 -12.52564 -12.40376 -11.93248 -11.83729 -11.54856 -11.36991 -11.20073 -10.80420 -10.69493 -10.43469 -9.64487 -8.18439 -8.07363 -6.30053 0.54932 0.81485 1.10685 1.39717 1.41023 1.48608 2.40517 3.12049 3.34247 3.53310 3.96383 4.15294 4.18200 4.23952 4.37641 4.48939 4.55821 4.60793 4.71913 4.92308 4.96176 5.05695 5.16721 5.24709 5.31377 5.42235 5.48726 5.61457 5.67633 5.80099 6.16087 6.77164 7.12152 7.47268 8.96367 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.023950 B = 0.009555 C = 0.007860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.804910 B = 2929.697027 C = 3561.702700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.030 3.970 3 Si 0.945 3.055 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.564 4.564 8 H 0.062 0.938 9 C 0.205 3.795 10 H 0.024 0.976 11 C -0.137 4.137 12 C -0.104 4.104 13 C -0.130 4.130 14 C 0.169 3.831 15 H 0.053 0.947 16 C -0.096 4.096 17 C -0.190 4.190 18 C 0.056 3.944 19 N -0.597 5.597 20 S -0.021 6.021 21 O -0.385 6.385 22 H 0.258 0.742 23 H 0.050 0.950 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.151 0.849 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.677 -5.198 11.444 12.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.173 4.173 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.602 4.602 8 H 0.080 0.920 9 C 0.149 3.851 10 H 0.042 0.958 11 C -0.175 4.175 12 C -0.141 4.141 13 C -0.168 4.168 14 C 0.108 3.892 15 H 0.070 0.930 16 C -0.210 4.210 17 C -0.220 4.220 18 C -0.073 4.073 19 N -0.322 5.322 20 S 0.107 5.893 21 O -0.305 6.305 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.169 0.831 30 H 0.138 0.862 31 H 0.114 0.886 32 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 1.506 -5.757 10.738 12.276 hybrid contribution 1.159 1.799 0.498 2.197 sum 2.664 -3.958 11.236 12.207 Atomic orbital electron populations 1.70213 1.07487 1.27036 1.48477 1.25803 0.95287 1.02359 0.93845 0.85832 0.78566 0.79386 0.79211 1.19338 1.21421 1.19108 1.21792 0.93319 0.91888 1.53167 0.91973 1.19658 0.88769 0.92611 0.84069 0.95781 1.22075 0.98666 0.98119 0.98601 1.21425 0.97237 1.01959 0.93476 1.22063 0.97558 0.97853 0.99356 1.19954 0.89117 0.97768 0.82314 0.92975 1.24133 1.00179 0.97813 0.98828 1.23498 1.01779 1.00575 0.96131 1.21742 0.90555 0.98406 0.96624 1.67146 1.30670 1.15621 1.18741 1.85981 1.31553 1.20787 1.50968 1.87940 1.35698 1.93692 1.13178 0.93283 0.93100 0.91670 0.90249 0.92233 0.92130 0.90011 0.83116 0.86190 0.88566 0.80305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.64 12.84 21.45 0.28 -53.36 16 2 C 0.03 1.64 5.40 84.65 0.46 2.10 16 3 Si 0.94 42.96 29.54 68.60 2.03 44.99 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.56 -30.36 6.59 25.60 0.17 -30.19 16 8 H 0.06 3.21 6.87 -2.91 -0.02 3.19 16 9 C 0.20 10.64 3.16 29.88 0.09 10.74 16 10 H 0.02 1.41 8.14 -2.38 -0.02 1.39 16 11 C -0.14 -5.64 5.59 30.68 0.17 -5.47 16 12 C -0.10 -3.71 5.78 30.71 0.18 -3.53 16 13 C -0.13 -4.71 5.40 30.68 0.17 -4.54 16 14 C 0.17 7.43 2.86 29.88 0.09 7.52 16 15 H 0.05 2.54 7.05 -2.38 -0.02 2.53 16 16 C -0.10 -3.77 5.53 24.97 0.14 -3.63 16 17 C -0.19 -6.23 10.30 24.62 0.25 -5.98 16 18 C 0.06 1.40 7.04 84.94 0.60 2.00 16 19 N -0.60 -16.84 8.34 -188.72 -1.57 -18.41 16 20 S -0.02 -0.74 23.85 -56.49 -1.35 -2.09 16 21 O -0.39 -20.39 9.61 -148.98 -1.43 -21.83 16 22 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 23 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 24 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 25 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.06 2.25 6.85 -2.39 -0.02 2.24 16 27 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.15 4.64 8.06 -2.91 -0.02 4.62 16 30 H 0.12 2.61 8.14 -2.38 -0.02 2.59 16 31 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.38 7.78 9.00 -91.22 -0.82 6.96 16 Total: -1.00 -65.84 274.43 0.55 -65.29 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.30 Total: 16.41 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 2.31 Total: -30.99 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: -1.30 Total: -71.77 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -1.43 Total: -21.83 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -0.74 SS G_CDS: -1.35 Total: -2.09 kcal Total: -65.84 0.55 -65.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725628934.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.214 kcal (2) G-P(sol) polarization free energy of solvation -65.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds