Wall clock time and date at job start Mon Mar 30 2020 04:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00278 * 2 1 4 4 H 1.48501 * 109.47488 * 240.00044 * 3 2 1 5 5 H 1.48506 * 109.47357 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47237 * 119.99838 * 3 2 1 7 7 C 1.37878 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99747 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99861 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.49347 * 59.96977 * 9 7 2 11 11 C 1.53097 * 109.47639 * 179.97438 * 9 7 2 12 12 C 1.53174 * 109.16185 * 62.37477 * 11 9 7 13 13 C 1.53176 * 109.04061 * 56.97999 * 12 11 9 14 14 C 1.53091 * 109.21206 * 302.98570 * 13 12 11 15 15 H 1.09000 * 109.48171 * 297.66002 * 14 13 12 16 16 C 1.50704 * 109.48023 * 177.62153 * 14 13 12 17 17 C 1.31739 * 121.60281 * 115.02368 * 16 14 13 18 18 S 1.77527 * 106.94810 * 180.21763 * 17 16 14 19 19 N 1.78459 * 96.59815 * 14.93477 * 18 17 16 20 20 C 1.48491 * 101.28455 * 335.57005 * 19 18 17 21 21 O 1.42902 * 109.47829 * 299.93509 * 9 7 2 22 22 H 0.97004 * 119.99589 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.52587 * 302.46329 * 11 9 7 24 24 H 1.09004 * 109.57034 * 182.30830 * 11 9 7 25 25 H 1.08995 * 109.54500 * 297.10556 * 12 11 9 26 26 H 1.09007 * 109.61482 * 176.88750 * 12 11 9 27 27 H 1.09002 * 109.52410 * 62.92413 * 13 12 11 28 28 H 1.09004 * 109.52533 * 183.05059 * 13 12 11 29 29 H 1.08001 * 126.52598 * 0.22359 * 17 16 14 30 30 H 1.00891 * 111.00250 * 93.72418 * 19 18 17 31 31 H 1.09001 * 109.43476 * 267.23534 * 20 19 18 32 32 H 1.09001 * 109.15502 * 147.83295 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6241 -2.5572 -0.8892 11 6 2.2456 -3.6630 0.0005 12 6 3.0823 -3.6093 1.2825 13 6 2.1446 -3.6460 2.4931 14 6 1.1538 -2.4828 2.3984 15 1 1.6976 -1.5387 2.4297 16 6 0.1910 -2.5472 3.5560 17 6 0.1580 -1.6082 4.4795 18 16 -1.0982 -2.0725 5.6449 19 7 -1.2568 -3.7679 5.1109 20 6 -0.7773 -3.6769 3.7084 21 8 0.4300 -2.5753 1.1677 22 1 -0.4850 0.8401 -0.0004 23 1 2.9015 -3.5816 -0.8662 24 1 1.7027 -4.6073 -0.0408 25 1 3.6642 -2.6878 1.2998 26 1 3.7552 -4.4662 1.3164 27 1 1.5988 -4.5895 2.5027 28 1 2.7283 -3.5536 3.4090 29 1 0.7773 -0.7243 4.5199 30 1 -0.6677 -4.3764 5.6593 31 1 -1.6265 -3.5143 3.0447 32 1 -0.2852 -4.6109 3.4374 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725628936.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:43 Heat of formation + Delta-G solvation = -23.014336 kcal Electronic energy + Delta-G solvation = -15969.329082 eV Core-core repulsion = 13442.310961 eV Total energy + Delta-G solvation = -2527.018120 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.73341 -36.53250 -32.72954 -32.42565 -31.59397 -29.29808 -25.74094 -25.10635 -23.39400 -22.21997 -19.21212 -18.54375 -17.59358 -16.44813 -15.64670 -15.20232 -14.67809 -14.37721 -14.02413 -13.56602 -13.50383 -12.89561 -12.35221 -12.29594 -11.86852 -11.66339 -11.32453 -10.96112 -10.75794 -10.59978 -10.41344 -10.30363 -10.08639 -9.89372 -9.73657 -9.40389 -8.80594 -8.52666 -7.90054 -7.14455 -6.04561 -4.20815 1.86629 2.09209 2.30965 3.24477 3.31626 3.32466 4.34926 4.55307 5.05127 5.14700 5.33895 5.49571 5.58571 5.60982 5.73919 5.86774 6.05070 6.11914 6.24828 6.29878 6.38608 6.46324 6.63372 6.66748 6.84471 6.87638 6.95551 7.07014 7.61123 7.80721 8.13813 8.73273 8.97616 9.51710 10.99399 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.023569 B = 0.009283 C = 0.007532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.703591 B = 3015.523326 C = 3716.333640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.081 3.919 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.563 4.563 8 H 0.057 0.943 9 C 0.213 3.787 10 H 0.063 0.937 11 C -0.142 4.142 12 C -0.108 4.108 13 C -0.139 4.139 14 C 0.160 3.840 15 H 0.075 0.925 16 C -0.122 4.122 17 C -0.166 4.166 18 S -0.016 6.016 19 N -0.577 5.577 20 C 0.060 3.940 21 O -0.364 6.364 22 H 0.262 0.738 23 H 0.057 0.943 24 H 0.041 0.959 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.167 0.833 30 H 0.346 0.654 31 H 0.118 0.882 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.229 -6.210 7.308 9.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.126 4.126 3 Si 0.709 3.291 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.601 4.601 8 H 0.075 0.925 9 C 0.157 3.843 10 H 0.081 0.919 11 C -0.180 4.180 12 C -0.145 4.145 13 C -0.177 4.177 14 C 0.098 3.902 15 H 0.092 0.908 16 C -0.135 4.135 17 C -0.297 4.297 18 S 0.112 5.888 19 N -0.295 5.295 20 C -0.070 4.070 21 O -0.284 6.284 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.184 0.816 30 H 0.160 0.840 31 H 0.136 0.864 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.382 -5.852 8.097 9.998 hybrid contribution 2.501 0.625 -0.899 2.730 sum 2.883 -5.228 7.198 9.352 Atomic orbital electron populations 1.70038 1.05793 1.26634 1.46546 1.25029 0.94667 0.98917 0.93997 0.86841 0.79873 0.83627 0.78746 1.20112 1.21129 1.20206 1.21485 0.93085 0.91097 1.54395 0.92508 1.19733 0.88647 0.90986 0.84935 0.91917 1.22190 0.99298 0.99673 0.96878 1.21429 0.97291 1.00974 0.94849 1.22146 0.98224 0.99215 0.98155 1.20212 0.88937 0.97501 0.83536 0.90763 1.22615 0.98036 0.96100 0.96704 1.25370 1.01671 1.02740 0.99923 1.86495 1.47495 1.05833 1.48985 1.67240 1.53188 1.03329 1.05756 1.21751 0.98564 0.98414 0.88233 1.87986 1.34749 1.93522 1.12110 0.92825 0.92412 0.94024 0.91179 0.93895 0.92720 0.92820 0.81595 0.83960 0.86420 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.28 12.84 55.43 0.71 -23.56 16 2 C 0.08 2.16 5.40 -17.82 -0.10 2.06 16 3 Si 0.88 20.59 29.54 -169.99 -5.02 15.57 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.56 -14.62 6.59 -34.44 -0.23 -14.85 16 8 H 0.06 1.45 6.87 -52.49 -0.36 1.09 16 9 C 0.21 5.16 3.16 -27.83 -0.09 5.07 16 10 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 11 C -0.14 -2.84 5.59 -26.59 -0.15 -2.99 16 12 C -0.11 -1.94 5.78 -26.55 -0.15 -2.10 16 13 C -0.14 -2.42 5.33 -26.59 -0.14 -2.57 16 14 C 0.16 3.29 2.66 -27.83 -0.07 3.22 16 15 H 0.07 1.72 6.94 -51.93 -0.36 1.36 16 16 C -0.12 -2.23 5.05 -101.77 -0.51 -2.74 16 17 C -0.17 -2.89 11.03 28.85 0.32 -2.58 16 18 S -0.02 -0.25 23.85 -107.50 -2.56 -2.81 16 19 N -0.58 -8.47 8.34 -10.89 -0.09 -8.57 16 20 C 0.06 0.97 6.76 -4.64 -0.03 0.94 16 21 O -0.36 -8.81 9.54 -35.23 -0.34 -9.14 16 22 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 1.35 6.85 -51.93 -0.36 0.99 16 26 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 27 H 0.05 0.89 7.11 -51.93 -0.37 0.52 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.17 2.76 8.06 -52.49 -0.42 2.33 16 30 H 0.35 4.20 9.01 -36.90 -0.33 3.86 16 31 H 0.12 2.11 8.14 -51.93 -0.42 1.68 16 32 H 0.09 1.31 7.05 -51.93 -0.37 0.94 16 LS Contribution 271.82 15.07 4.10 4.10 Total: -1.00 -28.01 271.82 -8.60 -36.61 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.24 Total: 4.33 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -1.16 Total: -16.52 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.62 Total: -32.13 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.34 Total: -9.14 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: -0.25 SS G_CDS: -2.56 Total: -2.81 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.01 -8.60 -36.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725628936.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.597 kcal (2) G-P(sol) polarization free energy of solvation -28.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds