Wall clock time and date at job start Mon Mar 30 2020 04:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00278 * 2 1 4 4 H 1.48501 * 109.47488 * 240.00044 * 3 2 1 5 5 H 1.48506 * 109.47357 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47237 * 119.99838 * 3 2 1 7 7 C 1.37878 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99747 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99861 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.49347 * 59.96977 * 9 7 2 11 11 C 1.53097 * 109.47639 * 179.97438 * 9 7 2 12 12 C 1.53174 * 109.16185 * 62.37477 * 11 9 7 13 13 C 1.53176 * 109.04061 * 56.97999 * 12 11 9 14 14 C 1.53091 * 109.21206 * 302.98570 * 13 12 11 15 15 H 1.09000 * 109.48171 * 297.66002 * 14 13 12 16 16 C 1.50704 * 109.48023 * 177.62153 * 14 13 12 17 17 C 1.31739 * 121.60281 * 115.02368 * 16 14 13 18 18 S 1.77527 * 106.94810 * 180.21763 * 17 16 14 19 19 N 1.78459 * 96.59815 * 14.93477 * 18 17 16 20 20 C 1.48491 * 101.28455 * 335.57005 * 19 18 17 21 21 O 1.42902 * 109.47829 * 299.93509 * 9 7 2 22 22 H 0.97004 * 119.99589 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.52587 * 302.46329 * 11 9 7 24 24 H 1.09004 * 109.57034 * 182.30830 * 11 9 7 25 25 H 1.08995 * 109.54500 * 297.10556 * 12 11 9 26 26 H 1.09007 * 109.61482 * 176.88750 * 12 11 9 27 27 H 1.09002 * 109.52410 * 62.92413 * 13 12 11 28 28 H 1.09004 * 109.52533 * 183.05059 * 13 12 11 29 29 H 1.08001 * 126.52598 * 0.22359 * 17 16 14 30 30 H 1.00891 * 111.00250 * 93.72418 * 19 18 17 31 31 H 1.09001 * 109.43476 * 267.23534 * 20 19 18 32 32 H 1.09001 * 109.15502 * 147.83295 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6241 -2.5572 -0.8892 11 6 2.2456 -3.6630 0.0005 12 6 3.0823 -3.6093 1.2825 13 6 2.1446 -3.6460 2.4931 14 6 1.1538 -2.4828 2.3984 15 1 1.6976 -1.5387 2.4297 16 6 0.1910 -2.5472 3.5560 17 6 0.1580 -1.6082 4.4795 18 16 -1.0982 -2.0725 5.6449 19 7 -1.2568 -3.7679 5.1109 20 6 -0.7773 -3.6769 3.7084 21 8 0.4300 -2.5753 1.1677 22 1 -0.4850 0.8401 -0.0004 23 1 2.9015 -3.5816 -0.8662 24 1 1.7027 -4.6073 -0.0408 25 1 3.6642 -2.6878 1.2998 26 1 3.7552 -4.4662 1.3164 27 1 1.5988 -4.5895 2.5027 28 1 2.7283 -3.5536 3.4090 29 1 0.7773 -0.7243 4.5199 30 1 -0.6677 -4.3764 5.6593 31 1 -1.6265 -3.5143 3.0447 32 1 -0.2852 -4.6109 3.4374 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725628936.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:43 Heat of formation + Delta-G solvation = -40.781864 kcal Electronic energy + Delta-G solvation = -15970.099539 eV Core-core repulsion = 13442.310961 eV Total energy + Delta-G solvation = -2527.788578 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 3.66 seconds Orbital eigenvalues (eV) -40.33859 -37.97365 -34.60774 -34.06792 -33.11686 -30.88421 -27.62525 -26.44571 -24.99057 -23.88643 -20.86207 -20.02031 -18.95466 -18.25066 -17.03289 -16.86032 -16.46561 -16.00698 -15.58154 -15.22076 -14.92444 -14.58483 -13.85253 -13.65713 -13.51743 -13.16743 -13.00221 -12.79646 -12.55052 -12.33842 -11.94210 -11.76133 -11.59184 -11.40806 -11.25641 -10.80631 -10.70758 -10.47657 -9.66412 -8.44365 -8.09607 -6.30753 0.59537 0.69547 0.97477 1.38098 1.39299 1.46462 2.38997 3.13087 3.26434 3.62167 3.86663 4.08898 4.17389 4.24464 4.26965 4.47224 4.53141 4.67927 4.75661 4.88857 4.95725 5.03634 5.14990 5.26784 5.32468 5.42918 5.48956 5.53954 5.68310 5.80348 6.15623 6.76005 7.11005 7.46347 8.93967 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.023569 B = 0.009283 C = 0.007532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.703591 B = 3015.523326 C = 3716.333640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.032 3.968 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.564 4.564 8 H 0.058 0.942 9 C 0.207 3.793 10 H 0.026 0.974 11 C -0.136 4.136 12 C -0.105 4.105 13 C -0.132 4.132 14 C 0.159 3.841 15 H 0.040 0.960 16 C -0.139 4.139 17 C -0.170 4.170 18 S -0.005 6.005 19 N -0.570 5.570 20 C 0.069 3.931 21 O -0.387 6.387 22 H 0.258 0.742 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.167 0.833 30 H 0.365 0.635 31 H 0.097 0.903 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.341 -7.324 8.565 11.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.171 4.171 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.602 4.602 8 H 0.076 0.924 9 C 0.151 3.849 10 H 0.044 0.956 11 C -0.174 4.174 12 C -0.143 4.143 13 C -0.170 4.170 14 C 0.098 3.902 15 H 0.058 0.942 16 C -0.152 4.152 17 C -0.301 4.301 18 S 0.123 5.877 19 N -0.290 5.290 20 C -0.061 4.061 21 O -0.307 6.307 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.185 0.815 30 H 0.182 0.818 31 H 0.115 0.885 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.518 -6.979 9.370 11.781 hybrid contribution 2.127 0.944 -1.255 2.644 sum 3.645 -6.035 8.115 10.750 Atomic orbital electron populations 1.70178 1.07289 1.27003 1.48534 1.25738 0.95295 1.02122 0.93917 0.85907 0.78671 0.79795 0.79078 1.19369 1.21377 1.19438 1.21792 0.93215 0.92107 1.53062 0.92353 1.19626 0.88767 0.92345 0.84197 0.95606 1.22065 0.98624 0.98282 0.98386 1.21422 0.97362 1.01660 0.93837 1.22087 0.97593 0.98364 0.98919 1.20236 0.89795 0.97418 0.82748 0.94242 1.22614 0.98807 0.97491 0.96284 1.25578 1.01753 1.02400 1.00402 1.86462 1.46467 1.06810 1.47946 1.67153 1.53701 1.02806 1.05302 1.21583 0.97339 0.98589 0.88617 1.87903 1.35850 1.93704 1.13247 0.93269 0.92072 0.92504 0.92889 0.90363 0.90957 0.90538 0.81531 0.81780 0.88505 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.26 12.84 21.45 0.28 -51.99 16 2 C 0.03 1.75 5.40 84.65 0.46 2.20 16 3 Si 0.94 42.74 29.54 68.60 2.03 44.77 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.56 -29.70 6.59 25.60 0.17 -29.53 16 8 H 0.06 2.99 6.87 -2.91 -0.02 2.97 16 9 C 0.21 10.20 3.16 29.88 0.09 10.29 16 10 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 11 C -0.14 -5.24 5.59 30.69 0.17 -5.06 16 12 C -0.11 -3.53 5.78 30.71 0.18 -3.35 16 13 C -0.13 -4.25 5.33 30.68 0.16 -4.08 16 14 C 0.16 6.49 2.66 29.88 0.08 6.57 16 15 H 0.04 1.86 6.94 -2.39 -0.02 1.85 16 16 C -0.14 -4.96 5.05 -17.52 -0.09 -5.05 16 17 C -0.17 -5.80 11.03 67.10 0.74 -5.06 16 18 S 0.00 -0.14 23.85 -56.49 -1.35 -1.49 16 19 N -0.57 -15.36 8.34 -188.35 -1.57 -16.94 16 20 C 0.07 2.11 6.76 84.90 0.57 2.68 16 21 O -0.39 -18.98 9.54 -148.98 -1.42 -20.40 16 22 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 23 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 25 H 0.05 1.95 6.85 -2.39 -0.02 1.94 16 26 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 27 H 0.07 2.10 7.11 -2.39 -0.02 2.08 16 28 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 29 H 0.17 5.52 8.06 -2.91 -0.02 5.50 16 30 H 0.37 7.69 9.01 -91.22 -0.82 6.86 16 31 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 32 H 0.11 2.92 7.05 -2.39 -0.02 2.91 16 Total: -1.00 -60.71 271.82 0.80 -59.90 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.30 Total: 16.53 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 2.54 Total: -30.39 kcal Atomic # 7 Polarization: -67.63 SS G_CDS: -1.30 Total: -68.92 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -1.42 Total: -20.40 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: -0.14 SS G_CDS: -1.35 Total: -1.49 kcal Total: -60.71 0.80 -59.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725628936.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.122 kcal (2) G-P(sol) polarization free energy of solvation -60.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.66 seconds