Wall clock time and date at job start Mon Mar 30 2020 04:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00553 * 2 1 4 4 H 1.48501 * 109.46772 * 270.00217 * 3 2 1 5 5 H 1.48503 * 109.46772 * 29.99440 * 3 2 1 6 6 H 1.48488 * 109.47304 * 149.99622 * 3 2 1 7 7 C 1.37883 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99618 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99925 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.48311 * 299.97314 * 9 7 2 11 11 C 1.53103 * 109.48739 * 179.97438 * 9 7 2 12 12 C 1.53176 * 109.16245 * 297.62206 * 11 9 7 13 13 C 1.53180 * 109.03399 * 303.01922 * 12 11 9 14 14 C 1.53087 * 109.16496 * 56.98411 * 13 12 11 15 15 H 1.08996 * 109.48973 * 62.37712 * 14 13 12 16 16 C 1.50706 * 109.48216 * 182.41042 * 14 13 12 17 17 C 1.31733 * 121.60401 * 244.96704 * 16 14 13 18 18 S 1.77528 * 106.95172 * 180.21478 * 17 16 14 19 19 N 1.78462 * 96.59691 * 14.93285 * 18 17 16 20 20 C 1.48501 * 101.28419 * 335.57057 * 19 18 17 21 21 O 1.42901 * 109.48007 * 60.00277 * 9 7 2 22 22 H 0.96999 * 119.99881 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.51969 * 57.52783 * 11 9 7 24 24 H 1.08993 * 109.52084 * 177.64982 * 11 9 7 25 25 H 1.09000 * 109.54534 * 62.88522 * 12 11 9 26 26 H 1.08997 * 109.54174 * 183.06899 * 12 11 9 27 27 H 1.09000 * 109.52361 * 297.07432 * 13 12 11 28 28 H 1.09007 * 109.52416 * 176.89312 * 13 12 11 29 29 H 1.08004 * 126.53021 * 0.21213 * 17 16 14 30 30 H 1.00900 * 110.99961 * 217.83591 * 19 18 17 31 31 H 1.08988 * 109.43227 * 267.23869 * 20 19 18 32 32 H 1.09004 * 109.15318 * 147.83330 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5466 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1941 0.0011 10 1 3.8753 -0.6810 -0.8890 11 6 4.0222 -2.6375 0.0023 12 6 3.5570 -3.3344 1.2845 13 6 4.0573 -2.5397 2.4947 14 6 3.5452 -1.1003 2.3973 15 1 2.4557 -1.0990 2.4284 16 6 4.0820 -0.2965 3.5536 17 6 3.2852 0.2033 4.4759 18 16 4.3137 1.0720 5.6331 19 7 5.7727 1.1304 4.6070 20 6 5.5458 -0.0333 3.7128 21 8 3.9876 -0.5203 1.1679 22 1 -0.4850 0.8400 -0.0004 23 1 3.6240 -3.1654 -0.8642 24 1 5.1113 -2.6385 -0.0394 25 1 2.4680 -3.3776 1.3016 26 1 3.9627 -4.3455 1.3177 27 1 5.1472 -2.5387 2.5046 28 1 3.6844 -2.9978 3.4109 29 1 2.2107 0.1036 4.5198 30 1 6.6079 1.0021 5.1585 31 1 6.0255 -0.9153 4.1368 32 1 5.9815 0.1762 2.7358 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725628937.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:47 Heat of formation + Delta-G solvation = -14.898683 kcal Electronic energy + Delta-G solvation = -16064.352930 eV Core-core repulsion = 13537.686731 eV Total energy + Delta-G solvation = -2526.666199 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.96880 -36.62078 -32.77284 -32.65191 -31.90331 -29.60941 -25.97557 -25.16620 -23.54558 -22.16649 -19.11475 -18.69354 -17.85323 -16.59899 -15.60113 -15.44302 -14.83706 -14.52879 -14.01406 -13.65006 -13.33969 -13.19088 -12.65587 -12.36360 -12.21938 -11.91251 -11.71669 -10.92141 -10.75262 -10.53707 -10.37362 -10.15480 -10.10047 -9.94262 -9.71213 -9.65312 -8.81593 -8.65259 -8.01102 -7.05377 -6.14815 -4.24081 1.71430 1.98729 2.20199 3.38447 3.49743 3.74311 4.39065 4.51848 4.83068 5.12562 5.22661 5.30664 5.46973 5.53267 5.63880 5.76128 5.94423 5.98255 6.15258 6.18184 6.31233 6.38414 6.51484 6.53175 6.71609 6.76611 6.84677 6.97821 7.25998 7.59720 8.15732 8.59857 8.87297 9.49826 10.95159 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.022905 B = 0.010557 C = 0.008504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.121243 B = 2651.533942 C = 3291.850238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.086 3.914 3 Si 0.858 3.142 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.216 1.216 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.174 3.826 10 H 0.062 0.938 11 C -0.131 4.131 12 C -0.110 4.110 13 C -0.134 4.134 14 C 0.152 3.848 15 H 0.086 0.914 16 C -0.112 4.112 17 C -0.138 4.138 18 S -0.032 6.032 19 N -0.584 5.584 20 C 0.055 3.945 21 O -0.386 6.386 22 H 0.265 0.735 23 H 0.062 0.938 24 H 0.043 0.957 25 H 0.075 0.925 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.173 0.827 30 H 0.360 0.640 31 H 0.066 0.934 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.940 -2.676 8.201 13.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.119 4.119 3 Si 0.685 3.315 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.139 1.139 7 C -0.590 4.590 8 H 0.094 0.906 9 C 0.119 3.881 10 H 0.079 0.921 11 C -0.169 4.169 12 C -0.148 4.148 13 C -0.173 4.173 14 C 0.091 3.909 15 H 0.104 0.896 16 C -0.124 4.124 17 C -0.269 4.269 18 S 0.096 5.904 19 N -0.305 5.305 20 C -0.075 4.075 21 O -0.306 6.306 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.062 0.938 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.190 0.810 30 H 0.176 0.824 31 H 0.084 0.916 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.825 -1.306 8.800 13.254 hybrid contribution 0.313 -0.593 -0.716 0.981 sum 10.138 -1.900 8.084 13.105 Atomic orbital electron populations 1.69944 1.06679 1.27434 1.48669 1.24983 0.94559 0.99703 0.92640 0.87189 0.83438 0.82430 0.78485 1.21255 1.21993 1.13861 1.21411 0.89497 0.94679 1.53365 0.90638 1.20166 0.94752 0.88655 0.84546 0.92078 1.21974 0.98486 0.98940 0.97528 1.21455 1.02147 0.96748 0.94410 1.22058 1.00145 0.96514 0.98537 1.20343 0.99080 0.88887 0.82577 0.89623 1.22116 0.93040 0.99712 0.97522 1.25148 1.02364 1.01851 0.97534 1.85939 1.06397 1.74318 1.23766 1.67399 1.03873 1.43002 1.16259 1.21696 0.95274 0.91031 0.99472 1.88093 1.74533 1.54846 1.13143 0.92577 0.91954 0.93832 0.90637 0.93572 0.92648 0.92269 0.80966 0.82421 0.91638 0.86655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.96 55.43 0.77 -25.72 16 2 C 0.09 2.40 5.47 -17.82 -0.10 2.31 16 3 Si 0.86 21.69 26.99 -169.99 -4.59 17.10 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.22 -5.38 5.30 56.52 0.30 -5.08 16 7 C -0.55 -14.64 7.18 -34.44 -0.25 -14.88 16 8 H 0.08 2.15 7.11 -52.48 -0.37 1.78 16 9 C 0.17 3.95 2.64 -27.83 -0.07 3.88 16 10 H 0.06 1.41 7.57 -51.93 -0.39 1.02 16 11 C -0.13 -2.50 5.59 -26.59 -0.15 -2.65 16 12 C -0.11 -1.93 5.78 -26.55 -0.15 -2.09 16 13 C -0.13 -2.24 5.34 -26.59 -0.14 -2.38 16 14 C 0.15 2.98 2.65 -27.84 -0.07 2.91 16 15 H 0.09 1.92 6.93 -51.93 -0.36 1.56 16 16 C -0.11 -1.97 5.05 -101.77 -0.51 -2.48 16 17 C -0.14 -2.33 11.03 28.85 0.32 -2.01 16 18 S -0.03 -0.49 23.85 -107.50 -2.56 -3.06 16 19 N -0.58 -8.47 8.36 -10.88 -0.09 -8.56 16 20 C 0.06 0.84 6.52 -4.63 -0.03 0.81 16 21 O -0.39 -8.54 6.74 -35.23 -0.24 -8.78 16 22 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 1.48 6.85 -51.93 -0.36 1.12 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.85 7.90 -51.93 -0.41 0.44 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.17 2.74 8.06 -52.48 -0.42 2.31 16 30 H 0.36 3.99 9.00 -36.90 -0.33 3.66 16 31 H 0.07 0.84 8.14 -51.94 -0.42 0.41 16 32 H 0.12 1.86 7.89 -51.93 -0.41 1.45 16 LS Contribution 267.00 15.07 4.02 4.02 Total: -1.00 -29.67 267.00 -8.25 -37.92 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -4.41 Total: 3.67 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -1.16 Total: -16.59 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.68 Total: -34.29 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.24 Total: -8.78 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.59 Total: 17.10 kcal Atomic # 16 Polarization: -0.49 SS G_CDS: -2.56 Total: -3.06 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.67 -8.25 -37.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725628937.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.023 kcal (2) G-P(sol) polarization free energy of solvation -29.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds