Wall clock time and date at job start Mon Mar 30 2020 04:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.83553 * 111.22581 * 2 1 4 4 C 1.77552 * 96.35432 * 141.00500 * 3 2 1 5 5 C 1.50704 * 125.93308 * 165.23840 * 4 3 2 6 6 C 1.31319 * 108.14189 * 345.21881 * 4 3 2 7 7 C 1.49611 * 118.46497 * 359.79847 * 6 4 3 8 8 H 1.08995 * 109.46780 * 138.99010 * 7 6 4 9 9 C 1.50709 * 109.47120 * 258.92781 * 7 6 4 10 10 O 1.21281 * 119.99469 * 34.85618 * 9 7 6 11 11 N 1.34772 * 120.00085 * 214.85744 * 9 7 6 12 12 C 1.46496 * 120.00034 * 179.97438 * 11 9 7 13 13 C 1.50699 * 109.47318 * 180.02562 * 12 11 9 14 14 H 1.08004 * 119.99611 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00165 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99946 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00078 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47019 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47287 * 119.99391 * 17 15 13 20 20 H 1.48497 * 109.46885 * 239.99584 * 17 15 13 21 21 H 1.08997 * 109.47447 * 66.55689 * 1 2 3 22 22 H 1.09002 * 109.47265 * 306.54691 * 1 2 3 23 23 H 1.09006 * 109.46781 * 186.55435 * 1 2 3 24 24 H 1.09001 * 111.07668 * 235.53341 * 2 1 3 25 25 H 1.09003 * 109.46676 * 359.97438 * 5 4 3 26 26 H 1.08996 * 109.47639 * 119.97250 * 5 4 3 27 27 H 1.08998 * 109.47257 * 239.98038 * 5 4 3 28 28 H 1.07996 * 120.77046 * 179.82709 * 6 4 3 29 29 H 0.97007 * 119.99519 * 0.02562 * 11 9 7 30 30 H 1.09003 * 109.47184 * 300.00244 * 12 11 9 31 31 H 1.09001 * 109.46870 * 60.00160 * 12 11 9 32 32 H 0.97004 * 119.99868 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1945 1.7110 0.0000 4 6 3.5441 1.3977 1.1104 5 6 4.7287 2.3007 1.3396 6 6 3.3307 0.2426 1.6976 7 6 2.0905 -0.5173 1.3470 8 1 2.3269 -1.5776 1.2588 9 6 1.0591 -0.3219 2.4283 10 8 0.9808 0.7413 3.0065 11 7 0.2240 -1.3287 2.7528 12 6 -0.7782 -1.1390 3.8043 13 6 -1.5770 -2.4060 3.9714 14 1 -1.3600 -3.2663 3.3556 15 6 -2.5853 -2.4665 4.9098 16 7 -2.8498 -1.4187 5.6593 17 14 -3.5749 -4.0372 5.1175 18 1 -3.0834 -5.0619 4.1617 19 1 -3.4198 -4.5400 6.5061 20 1 -5.0086 -3.7580 4.8493 21 1 -0.3634 0.4088 -0.9428 22 1 -0.3634 0.6120 0.8256 23 1 -0.3633 -1.0210 0.1173 24 1 1.9220 -0.5756 -0.8385 25 1 4.6351 3.1884 0.7141 26 1 4.7623 2.5969 2.3881 27 1 5.6453 1.7699 1.0824 28 1 4.0339 -0.1496 2.4173 29 1 0.2870 -2.1792 2.2904 30 1 -0.2790 -0.8982 4.7429 31 1 -1.4451 -0.3225 3.5275 32 1 -3.5591 -1.4614 6.3197 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725629282.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:09 Heat of formation + Delta-G solvation = -30.268015 kcal Electronic energy + Delta-G solvation = -15172.497613 eV Core-core repulsion = 12645.164949 eV Total energy + Delta-G solvation = -2527.332663 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.56012 -36.12327 -34.17683 -33.29186 -32.22237 -29.31044 -27.48155 -25.13341 -23.30285 -22.11252 -20.19221 -19.00718 -17.06648 -16.58216 -15.87189 -15.35130 -15.07410 -14.43998 -13.98737 -13.63643 -13.57524 -13.13505 -12.84250 -12.73071 -12.12259 -11.96952 -11.83631 -11.60863 -11.29499 -10.99668 -10.95157 -10.87866 -10.33401 -10.11224 -9.70768 -9.40005 -9.08114 -8.75729 -7.90161 -7.26144 -6.18553 -4.25659 1.70006 1.92213 2.40597 3.21886 3.29038 3.29931 3.31927 4.07189 4.35322 4.51276 4.67493 5.00725 5.09395 5.17813 5.28349 5.37814 5.50267 5.57274 5.69301 5.75407 5.84669 5.88535 6.13595 6.34498 6.50899 7.28793 7.41046 7.49845 7.64280 7.94921 8.59466 8.76215 9.07452 9.41261 10.91635 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.047454 B = 0.005371 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.901185 B = 5211.823343 C = 5411.554538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.036 4.036 3 S -0.178 6.178 4 C -0.088 4.088 5 C -0.083 4.083 6 C -0.161 4.161 7 C -0.088 4.088 8 H 0.104 0.896 9 C 0.513 3.487 10 O -0.537 6.537 11 N -0.711 5.711 12 C 0.251 3.749 13 C -0.543 4.543 14 H 0.063 0.937 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.903 3.097 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 H 0.066 0.934 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.109 0.891 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.132 0.868 29 H 0.389 0.611 30 H 0.026 0.974 31 H 0.027 0.973 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.581 1.051 -11.361 16.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 S 0.060 5.940 4 C -0.200 4.200 5 C -0.142 4.142 6 C -0.190 4.190 7 C -0.111 4.111 8 H 0.123 0.877 9 C 0.296 3.704 10 O -0.414 6.414 11 N -0.360 5.360 12 C 0.130 3.870 13 C -0.581 4.581 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.730 3.270 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 H 0.085 0.915 22 H 0.097 0.903 23 H 0.097 0.903 24 H 0.127 0.873 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.150 0.850 29 H 0.222 0.778 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.949 2.954 -11.405 16.084 hybrid contribution -0.141 -2.389 0.727 2.501 sum 10.808 0.565 -10.678 15.204 Atomic orbital electron populations 1.21871 0.90707 1.03895 1.03671 1.24056 1.00171 0.93804 0.98475 1.86138 1.32322 1.17243 1.58268 1.23680 0.98123 0.97623 1.00564 1.20365 0.93233 0.97784 1.02798 1.22337 0.97459 0.96972 1.02248 1.21037 0.93838 1.02246 0.94005 0.87747 1.19863 0.81972 0.85017 0.83533 1.90691 1.71178 1.26163 1.53384 1.46529 1.35416 1.14257 1.39778 1.19103 0.85458 0.97332 0.85114 1.21250 1.17607 0.98322 1.20914 0.91867 1.24949 0.96953 0.96810 0.95272 1.69985 1.30982 1.29140 1.22128 0.86373 0.79817 0.82709 0.78081 1.19636 1.20803 1.20786 0.91546 0.90272 0.90319 0.87314 0.91238 0.90441 0.90597 0.84992 0.77814 0.95624 0.95504 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.39 37.16 0.31 -1.73 16 2 C -0.04 -0.49 4.01 -25.79 -0.10 -0.59 16 3 S -0.18 -2.72 22.61 -107.50 -2.43 -5.15 16 4 C -0.09 -1.24 6.56 -36.10 -0.24 -1.48 16 5 C -0.08 -0.89 10.40 36.01 0.37 -0.52 16 6 C -0.16 -2.35 8.87 -36.63 -0.32 -2.67 16 7 C -0.09 -1.31 2.94 -92.50 -0.27 -1.58 16 8 H 0.10 1.25 8.11 -51.93 -0.42 0.83 16 9 C 0.51 10.14 4.59 -10.98 -0.05 10.08 16 10 O -0.54 -13.02 16.35 5.56 0.09 -12.93 16 11 N -0.71 -14.54 5.30 -61.47 -0.33 -14.86 16 12 C 0.25 6.54 5.43 -5.20 -0.03 6.51 16 13 C -0.54 -14.47 9.28 -34.44 -0.32 -14.79 16 14 H 0.06 1.57 7.60 -52.48 -0.40 1.18 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.88 -25.95 13.29 55.43 0.74 -25.21 16 17 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.08 1.43 6.83 -51.93 -0.35 1.08 16 23 H 0.08 1.05 8.05 -51.93 -0.42 0.63 16 24 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 29 H 0.39 6.76 8.30 -40.82 -0.34 6.42 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 LS Contribution 286.58 15.07 4.32 4.32 Total: -1.00 -32.06 286.58 -7.83 -39.89 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.45 Total: 3.46 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -0.75 Total: -5.12 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.41 Total: -40.07 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: -2.72 SS G_CDS: -2.43 Total: -5.15 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.06 -7.83 -39.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725629282.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.619 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds