Wall clock time and date at job start Mon Mar 30 2020 04:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.83553 * 111.22581 * 2 1 4 4 C 1.77552 * 96.35432 * 141.00500 * 3 2 1 5 5 C 1.50704 * 125.93308 * 165.23840 * 4 3 2 6 6 C 1.31319 * 108.14189 * 345.21881 * 4 3 2 7 7 C 1.49611 * 118.46497 * 359.79847 * 6 4 3 8 8 H 1.08995 * 109.46780 * 138.99010 * 7 6 4 9 9 C 1.50709 * 109.47120 * 258.92781 * 7 6 4 10 10 O 1.21281 * 119.99469 * 34.85618 * 9 7 6 11 11 N 1.34772 * 120.00085 * 214.85744 * 9 7 6 12 12 C 1.46496 * 120.00034 * 179.97438 * 11 9 7 13 13 C 1.50699 * 109.47318 * 180.02562 * 12 11 9 14 14 H 1.08004 * 119.99611 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00165 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99946 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00078 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47019 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47287 * 119.99391 * 17 15 13 20 20 H 1.48497 * 109.46885 * 239.99584 * 17 15 13 21 21 H 1.08997 * 109.47447 * 66.55689 * 1 2 3 22 22 H 1.09002 * 109.47265 * 306.54691 * 1 2 3 23 23 H 1.09006 * 109.46781 * 186.55435 * 1 2 3 24 24 H 1.09001 * 111.07668 * 235.53341 * 2 1 3 25 25 H 1.09003 * 109.46676 * 359.97438 * 5 4 3 26 26 H 1.08996 * 109.47639 * 119.97250 * 5 4 3 27 27 H 1.08998 * 109.47257 * 239.98038 * 5 4 3 28 28 H 1.07996 * 120.77046 * 179.82709 * 6 4 3 29 29 H 0.97007 * 119.99519 * 0.02562 * 11 9 7 30 30 H 1.09003 * 109.47184 * 300.00244 * 12 11 9 31 31 H 1.09001 * 109.46870 * 60.00160 * 12 11 9 32 32 H 0.97004 * 119.99868 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1945 1.7110 0.0000 4 6 3.5441 1.3977 1.1104 5 6 4.7287 2.3007 1.3396 6 6 3.3307 0.2426 1.6976 7 6 2.0905 -0.5173 1.3470 8 1 2.3269 -1.5776 1.2588 9 6 1.0591 -0.3219 2.4283 10 8 0.9808 0.7413 3.0065 11 7 0.2240 -1.3287 2.7528 12 6 -0.7782 -1.1390 3.8043 13 6 -1.5770 -2.4060 3.9714 14 1 -1.3600 -3.2663 3.3556 15 6 -2.5853 -2.4665 4.9098 16 7 -2.8498 -1.4187 5.6593 17 14 -3.5749 -4.0372 5.1175 18 1 -3.0834 -5.0619 4.1617 19 1 -3.4198 -4.5400 6.5061 20 1 -5.0086 -3.7580 4.8493 21 1 -0.3634 0.4088 -0.9428 22 1 -0.3634 0.6120 0.8256 23 1 -0.3633 -1.0210 0.1173 24 1 1.9220 -0.5756 -0.8385 25 1 4.6351 3.1884 0.7141 26 1 4.7623 2.5969 2.3881 27 1 5.6453 1.7699 1.0824 28 1 4.0339 -0.1496 2.4173 29 1 0.2870 -2.1792 2.2904 30 1 -0.2790 -0.8982 4.7429 31 1 -1.4451 -0.3225 3.5275 32 1 -3.5591 -1.4614 6.3197 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725629282.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:03 Heat of formation + Delta-G solvation = -52.035232 kcal Electronic energy + Delta-G solvation = -15173.441510 eV Core-core repulsion = 12645.164949 eV Total energy + Delta-G solvation = -2528.276561 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 8.43 seconds Orbital eigenvalues (eV) -41.10167 -37.44805 -36.08729 -34.61177 -34.01641 -30.43852 -29.38443 -26.44341 -24.85093 -23.68098 -21.69405 -20.39707 -18.76410 -17.88839 -17.44998 -16.99141 -16.69728 -16.09571 -15.40145 -15.07226 -14.62998 -14.39384 -14.19398 -14.00975 -13.88514 -13.65946 -13.19421 -12.98243 -12.76991 -12.73840 -12.40779 -12.21714 -12.01679 -11.45330 -11.22046 -10.88595 -10.81311 -10.68907 -9.82121 -8.44764 -8.28530 -6.45317 0.59904 0.79619 1.28771 1.43924 1.44663 1.58109 1.75692 2.33242 2.61787 3.06579 3.35179 3.54009 3.87584 4.05237 4.11492 4.30318 4.46434 4.66025 4.67136 4.73164 4.74319 4.93059 5.09683 5.12684 5.18496 5.24892 5.46202 5.49449 5.69458 5.85288 6.66158 6.90574 7.24184 7.49217 8.83616 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.047454 B = 0.005371 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.901185 B = 5211.823343 C = 5411.554538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.024 4.024 3 S -0.228 6.228 4 C -0.084 4.084 5 C -0.084 4.084 6 C -0.181 4.181 7 C -0.080 4.080 8 H 0.144 0.856 9 C 0.513 3.487 10 O -0.588 6.588 11 N -0.702 5.702 12 C 0.269 3.731 13 C -0.552 4.552 14 H 0.086 0.914 15 C 0.003 3.997 16 N -0.933 5.933 17 Si 0.984 3.016 18 H -0.251 1.251 19 H -0.280 1.280 20 H -0.280 1.280 21 H 0.084 0.916 22 H 0.032 0.968 23 H 0.090 0.910 24 H 0.152 0.848 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.104 0.896 28 H 0.149 0.851 29 H 0.408 0.592 30 H -0.016 1.016 31 H -0.014 1.014 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.629 -1.321 -12.972 18.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 S 0.010 5.990 4 C -0.196 4.196 5 C -0.142 4.142 6 C -0.210 4.210 7 C -0.102 4.102 8 H 0.162 0.838 9 C 0.299 3.701 10 O -0.468 6.468 11 N -0.352 5.352 12 C 0.146 3.854 13 C -0.590 4.590 14 H 0.104 0.896 15 C -0.196 4.196 16 N -0.572 5.572 17 Si 0.807 3.193 18 H -0.174 1.174 19 H -0.206 1.206 20 H -0.206 1.206 21 H 0.103 0.897 22 H 0.051 0.949 23 H 0.109 0.891 24 H 0.169 0.831 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.122 0.878 28 H 0.166 0.834 29 H 0.244 0.756 30 H 0.002 0.998 31 H 0.004 0.996 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.028 0.555 -13.062 17.765 hybrid contribution -0.446 -1.553 1.221 2.025 sum 11.582 -0.998 -11.840 16.593 Atomic orbital electron populations 1.21832 0.91554 1.03749 1.02767 1.24214 0.99361 0.92566 0.99065 1.86317 1.33807 1.19929 1.58904 1.24119 0.98145 0.97720 0.99621 1.20493 0.93040 0.97718 1.02940 1.22534 0.97753 0.97461 1.03225 1.21079 0.92003 1.04960 0.92169 0.83825 1.20794 0.81948 0.83616 0.83710 1.90665 1.72548 1.28190 1.55447 1.46225 1.34586 1.15636 1.38792 1.18501 0.85661 0.96321 0.84878 1.21644 1.17466 0.98732 1.21112 0.89589 1.26057 0.98244 1.00557 0.94736 1.70152 1.31930 1.31979 1.23093 0.85125 0.77691 0.78166 0.78319 1.17404 1.20628 1.20609 0.89679 0.94856 0.89092 0.83052 0.90829 0.90372 0.87754 0.83390 0.75571 0.99804 0.99645 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 8.39 71.98 0.60 -3.25 16 2 C -0.02 -0.58 4.01 31.21 0.13 -0.46 16 3 S -0.23 -6.75 22.61 -56.49 -1.28 -8.03 16 4 C -0.08 -2.25 6.56 25.34 0.17 -2.08 16 5 C -0.08 -1.64 10.40 71.24 0.74 -0.89 16 6 C -0.18 -4.90 8.87 25.00 0.22 -4.68 16 7 C -0.08 -2.19 2.94 -12.01 -0.04 -2.22 16 8 H 0.14 2.81 8.11 -2.39 -0.02 2.79 16 9 C 0.51 20.32 4.59 87.66 0.40 20.72 16 10 O -0.59 -29.67 16.35 -3.03 -0.05 -29.72 16 11 N -0.70 -28.72 5.30 -466.79 -2.47 -31.20 16 12 C 0.27 14.61 5.43 85.63 0.46 15.07 16 13 C -0.55 -29.43 9.28 25.60 0.24 -29.19 16 14 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 15 C 0.00 0.19 5.46 84.65 0.46 0.65 16 16 N -0.93 -56.25 13.29 21.45 0.28 -55.96 16 17 Si 0.98 41.81 29.54 68.60 2.03 43.84 16 18 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 19 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 21 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 22 H 0.03 1.22 6.83 -2.39 -0.02 1.20 16 23 H 0.09 2.24 8.05 -2.38 -0.02 2.22 16 24 H 0.15 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 29 H 0.41 13.43 8.30 -92.70 -0.77 12.66 16 30 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 31 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 32 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -73.20 286.58 2.24 -70.96 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.34 Total: 16.45 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 3.39 Total: -6.34 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -2.19 Total: -87.16 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.05 Total: -29.72 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: -6.75 SS G_CDS: -1.28 Total: -8.03 kcal Total: -73.20 2.24 -70.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725629282.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.924 kcal (2) G-P(sol) polarization free energy of solvation -73.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.43 seconds