Wall clock time and date at job start Mon Mar 30 2020 04:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.15889 * 2 1 4 4 C 1.49579 * 109.24630 * 240.60038 * 2 1 3 5 5 C 1.31730 * 116.78656 * 259.33593 * 4 2 1 6 6 C 1.50704 * 126.52761 * 179.75951 * 5 4 2 7 7 H 1.09002 * 110.54939 * 356.42491 * 6 5 4 8 8 C 1.55227 * 110.77845 * 119.28520 * 6 5 4 9 9 C 1.54813 * 101.98357 * 155.50344 * 8 6 5 10 10 C 1.54098 * 104.30472 * 339.26359 * 9 8 6 11 11 H 1.08999 * 109.88182 * 117.33024 * 10 9 8 12 12 C 1.50708 * 109.87689 * 238.32694 * 10 9 8 13 13 H 1.07994 * 119.99678 * 0.02562 * 12 10 9 14 14 C 1.37879 * 119.99811 * 179.97438 * 12 10 9 15 15 N 1.31512 * 119.99571 * 180.02562 * 14 12 10 16 16 Si 1.86804 * 120.00147 * 0.02562 * 14 12 10 17 17 H 1.48498 * 109.46979 * 89.99720 * 16 14 12 18 18 H 1.48493 * 109.46870 * 209.99742 * 16 14 12 19 19 H 1.48504 * 109.46966 * 330.00054 * 16 14 12 20 20 O 1.43744 * 107.29564 * 357.90152 * 10 9 8 21 21 S 1.77531 * 106.95271 * 0.02562 * 5 4 2 22 22 N 1.48308 * 109.24289 * 119.39366 * 2 1 3 23 23 H 1.08997 * 109.46914 * 179.39916 * 1 2 3 24 24 H 1.09001 * 109.46970 * 299.39966 * 1 2 3 25 25 H 1.09000 * 109.47235 * 59.39840 * 1 2 3 26 26 H 1.08002 * 121.60707 * 79.31231 * 4 2 1 27 27 H 1.08999 * 110.89081 * 37.37076 * 8 6 5 28 28 H 1.09003 * 111.02102 * 273.69589 * 8 6 5 29 29 H 1.09002 * 110.48794 * 220.51904 * 9 8 6 30 30 H 1.09002 * 110.48657 * 98.00326 * 9 8 6 31 31 H 0.97007 * 119.99773 * 179.97438 * 15 14 12 32 32 H 1.00903 * 110.99870 * 335.10315 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8877 1.0297 0.0000 4 6 2.0230 -0.6932 -1.2303 5 6 2.4242 -1.9400 -1.0888 6 6 2.9536 -2.8407 -2.1749 7 1 2.9080 -2.3409 -3.1426 8 6 4.4069 -3.2865 -1.8609 9 6 4.5159 -4.6105 -2.6559 10 6 3.0538 -5.0471 -2.8706 11 1 2.8253 -5.0663 -3.9362 12 6 2.8345 -6.4140 -2.2750 13 1 3.6502 -6.9284 -1.7891 14 6 1.5921 -7.0072 -2.3497 15 7 1.4006 -8.1998 -1.8295 16 14 0.1808 -6.1170 -3.1896 17 1 0.1615 -6.4700 -4.6319 18 1 -1.1030 -6.5227 -2.5634 19 1 0.3624 -4.6506 -3.0413 20 8 2.2182 -4.0826 -2.2089 21 16 2.2151 -2.3599 0.6234 22 7 2.0188 -0.6872 1.2200 23 1 -0.3633 -1.0276 -0.0108 24 1 -0.3633 0.5045 0.8953 25 1 -0.3634 0.5231 -0.8845 26 1 2.0486 -0.1957 -2.1886 27 1 4.5375 -3.4621 -0.7931 28 1 5.1278 -2.5541 -2.2243 29 1 5.0567 -5.3594 -2.0774 30 1 5.0080 -4.4410 -3.6136 31 1 0.5264 -8.6171 -1.8817 32 1 1.3312 -0.6475 1.9574 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725629331.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:12 Heat of formation + Delta-G solvation = -9.408702 kcal Electronic energy + Delta-G solvation = -15508.598540 eV Core-core repulsion = 12982.170404 eV Total energy + Delta-G solvation = -2526.428136 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.69670 -37.58590 -32.98121 -32.01511 -31.11437 -29.04384 -28.41690 -24.93247 -22.81952 -21.17116 -20.04671 -19.82685 -17.43769 -17.00730 -15.62952 -15.38794 -14.88260 -14.56188 -14.14965 -13.69086 -13.41370 -13.07179 -12.63142 -12.55018 -12.29967 -11.80347 -11.70881 -11.12874 -11.07119 -10.83353 -10.66404 -10.15587 -10.05951 -9.86307 -9.70983 -9.60803 -9.33474 -8.54031 -8.35747 -7.02453 -6.09101 -4.16854 1.73334 1.86583 2.28925 3.38709 3.45006 3.69399 4.26139 4.54307 4.59433 4.82820 4.93377 5.13381 5.28586 5.36668 5.43605 5.54726 5.57353 5.71936 5.85051 5.90602 5.93949 6.13747 6.17539 6.39184 6.44859 6.49708 6.65805 6.70690 7.13509 7.61506 8.11954 8.44830 8.92566 9.54914 11.01431 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.027714 B = 0.008363 C = 0.007552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.066805 B = 3347.229934 C = 3706.533506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.082 3.918 3 H 0.105 0.895 4 C -0.202 4.202 5 C -0.063 4.063 6 C 0.127 3.873 7 H 0.073 0.927 8 C -0.141 4.141 9 C -0.135 4.135 10 C 0.166 3.834 11 H 0.027 0.973 12 C -0.520 4.520 13 H 0.079 0.921 14 C 0.084 3.916 15 N -0.891 5.891 16 Si 0.868 3.132 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.225 1.225 20 O -0.360 6.360 21 S 0.032 5.968 22 N -0.599 5.599 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.143 0.857 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.265 0.735 32 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.370 16.628 1.393 16.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.029 4.029 3 H 0.122 0.878 4 C -0.233 4.233 5 C -0.177 4.177 6 C 0.066 3.934 7 H 0.090 0.910 8 C -0.179 4.179 9 C -0.173 4.173 10 C 0.110 3.890 11 H 0.045 0.955 12 C -0.557 4.557 13 H 0.097 0.903 14 C -0.120 4.120 15 N -0.528 5.528 16 Si 0.694 3.306 17 H -0.211 1.211 18 H -0.217 1.217 19 H -0.148 1.148 20 O -0.281 6.281 21 S 0.162 5.838 22 N -0.321 5.321 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.161 0.839 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.741 15.833 2.361 16.025 hybrid contribution -1.602 1.111 -1.291 2.338 sum -0.861 16.944 1.070 16.999 Atomic orbital electron populations 1.22435 0.94848 1.03569 1.02835 1.21318 0.94741 0.99986 0.86882 0.87757 1.22938 1.04660 0.96084 0.99628 1.24156 0.99972 0.96463 0.97107 1.21424 0.91456 0.87995 0.92477 0.90973 1.23150 0.95122 0.97501 1.02079 1.22877 0.99390 0.96016 0.98978 1.20778 0.86077 0.89033 0.93070 0.95512 1.21107 0.98143 0.97145 1.39303 0.90311 1.25049 0.98820 0.94161 0.93983 1.69924 1.23728 1.14986 1.44173 0.87008 0.81088 0.83731 0.78754 1.21112 1.21725 1.14775 1.89419 1.40638 1.17267 1.80752 1.86802 1.90043 1.04890 1.02033 1.67442 1.49014 1.06946 1.08698 0.91347 0.91845 0.91007 0.83948 0.90230 0.91527 0.90484 0.92588 0.92545 0.82220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 9.03 37.16 0.34 -1.53 16 2 C 0.08 0.99 3.72 -68.63 -0.25 0.73 16 3 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.20 -2.84 9.54 -36.73 -0.35 -3.19 16 5 C -0.06 -1.09 5.65 -36.19 -0.20 -1.29 16 6 C 0.13 2.37 3.82 -26.70 -0.10 2.27 16 7 H 0.07 1.21 8.13 -51.93 -0.42 0.78 16 8 C -0.14 -2.47 6.60 -24.60 -0.16 -2.63 16 9 C -0.13 -2.65 6.62 -25.20 -0.17 -2.82 16 10 C 0.17 3.97 2.70 -27.31 -0.07 3.90 16 11 H 0.03 0.64 7.53 -51.93 -0.39 0.25 16 12 C -0.52 -14.89 9.36 -34.44 -0.32 -15.21 16 13 H 0.08 2.40 7.58 -52.49 -0.40 2.01 16 14 C 0.08 2.49 5.47 -17.82 -0.10 2.39 16 15 N -0.89 -27.64 13.96 55.43 0.77 -26.87 16 16 Si 0.87 22.20 27.02 -169.99 -4.59 17.61 16 17 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 19 H -0.22 -5.62 5.41 56.52 0.31 -5.32 16 20 O -0.36 -8.54 7.94 -35.23 -0.28 -8.82 16 21 S 0.03 0.57 23.48 -107.50 -2.52 -1.96 16 22 N -0.60 -8.06 8.23 -5.29 -0.04 -8.10 16 23 H 0.07 0.87 8.06 -51.93 -0.42 0.45 16 24 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 27 H 0.08 1.47 7.82 -51.93 -0.41 1.07 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 1.58 7.40 -51.93 -0.38 1.19 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 32 H 0.36 4.04 8.45 -36.90 -0.31 3.73 16 LS Contribution 274.78 15.07 4.14 4.14 Total: -1.00 -31.85 274.78 -8.42 -40.27 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -4.50 Total: 1.11 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -1.40 Total: -17.39 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.73 Total: -34.97 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.28 Total: -8.82 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.59 Total: 17.61 kcal Atomic # 16 Polarization: 0.57 SS G_CDS: -2.52 Total: -1.96 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.85 -8.42 -40.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725629331.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.866 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds