Wall clock time and date at job start Mon Mar 30 2020 04:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.15889 * 2 1 4 4 C 1.49579 * 109.24630 * 240.60038 * 2 1 3 5 5 C 1.31730 * 116.78656 * 259.33593 * 4 2 1 6 6 C 1.50704 * 126.52761 * 179.75951 * 5 4 2 7 7 H 1.09002 * 110.54939 * 356.42491 * 6 5 4 8 8 C 1.55227 * 110.77845 * 119.28520 * 6 5 4 9 9 C 1.54813 * 101.98357 * 155.50344 * 8 6 5 10 10 C 1.54098 * 104.30472 * 339.26359 * 9 8 6 11 11 H 1.08999 * 109.88182 * 117.33024 * 10 9 8 12 12 C 1.50708 * 109.87689 * 238.32694 * 10 9 8 13 13 H 1.07994 * 119.99678 * 0.02562 * 12 10 9 14 14 C 1.37879 * 119.99811 * 179.97438 * 12 10 9 15 15 N 1.31512 * 119.99571 * 180.02562 * 14 12 10 16 16 Si 1.86804 * 120.00147 * 0.02562 * 14 12 10 17 17 H 1.48498 * 109.46979 * 89.99720 * 16 14 12 18 18 H 1.48493 * 109.46870 * 209.99742 * 16 14 12 19 19 H 1.48504 * 109.46966 * 330.00054 * 16 14 12 20 20 O 1.43744 * 107.29564 * 357.90152 * 10 9 8 21 21 S 1.77531 * 106.95271 * 0.02562 * 5 4 2 22 22 N 1.48308 * 109.24289 * 119.39366 * 2 1 3 23 23 H 1.08997 * 109.46914 * 179.39916 * 1 2 3 24 24 H 1.09001 * 109.46970 * 299.39966 * 1 2 3 25 25 H 1.09000 * 109.47235 * 59.39840 * 1 2 3 26 26 H 1.08002 * 121.60707 * 79.31231 * 4 2 1 27 27 H 1.08999 * 110.89081 * 37.37076 * 8 6 5 28 28 H 1.09003 * 111.02102 * 273.69589 * 8 6 5 29 29 H 1.09002 * 110.48794 * 220.51904 * 9 8 6 30 30 H 1.09002 * 110.48657 * 98.00326 * 9 8 6 31 31 H 0.97007 * 119.99773 * 179.97438 * 15 14 12 32 32 H 1.00903 * 110.99870 * 335.10315 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8877 1.0297 0.0000 4 6 2.0230 -0.6932 -1.2303 5 6 2.4242 -1.9400 -1.0888 6 6 2.9536 -2.8407 -2.1749 7 1 2.9080 -2.3409 -3.1426 8 6 4.4069 -3.2865 -1.8609 9 6 4.5159 -4.6105 -2.6559 10 6 3.0538 -5.0471 -2.8706 11 1 2.8253 -5.0663 -3.9362 12 6 2.8345 -6.4140 -2.2750 13 1 3.6502 -6.9284 -1.7891 14 6 1.5921 -7.0072 -2.3497 15 7 1.4006 -8.1998 -1.8295 16 14 0.1808 -6.1170 -3.1896 17 1 0.1615 -6.4700 -4.6319 18 1 -1.1030 -6.5227 -2.5634 19 1 0.3624 -4.6506 -3.0413 20 8 2.2182 -4.0826 -2.2089 21 16 2.2151 -2.3599 0.6234 22 7 2.0188 -0.6872 1.2200 23 1 -0.3633 -1.0276 -0.0108 24 1 -0.3633 0.5045 0.8953 25 1 -0.3634 0.5231 -0.8845 26 1 2.0486 -0.1957 -2.1886 27 1 4.5375 -3.4621 -0.7931 28 1 5.1278 -2.5541 -2.2243 29 1 5.0567 -5.3594 -2.0774 30 1 5.0080 -4.4410 -3.6136 31 1 0.5264 -8.6171 -1.8817 32 1 1.3312 -0.6475 1.9574 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725629331.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:12 Heat of formation + Delta-G solvation = -31.699680 kcal Electronic energy + Delta-G solvation = -15509.565149 eV Core-core repulsion = 12982.170404 eV Total energy + Delta-G solvation = -2527.394745 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.25012 -38.70123 -34.90389 -33.57398 -32.72218 -30.39395 -29.69883 -26.62329 -24.17715 -22.54857 -21.73598 -20.99864 -19.25605 -18.52935 -17.10644 -16.83857 -16.25264 -16.06798 -15.64682 -15.16200 -14.78613 -14.48787 -14.27628 -13.93760 -13.52861 -13.27769 -12.88454 -12.73411 -12.70897 -12.32967 -12.03681 -11.79068 -11.72095 -11.55244 -11.34673 -10.96716 -10.80422 -10.71724 -10.14997 -8.34764 -8.26166 -6.46633 0.57638 0.70310 1.13928 1.34890 1.39255 1.66916 2.41882 2.90252 3.25277 3.50291 3.71521 3.93294 3.94251 4.13110 4.19275 4.30289 4.38119 4.54880 4.63167 4.73262 4.80307 4.97746 4.98170 5.01708 5.11034 5.20163 5.33949 5.39456 5.54278 5.56699 6.20668 6.36596 6.69557 7.29383 8.79730 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.027714 B = 0.008363 C = 0.007552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.066805 B = 3347.229934 C = 3706.533506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.074 3.926 3 H 0.137 0.863 4 C -0.166 4.166 5 C -0.101 4.101 6 C 0.123 3.877 7 H 0.102 0.898 8 C -0.130 4.130 9 C -0.132 4.132 10 C 0.165 3.835 11 H 0.034 0.966 12 C -0.529 4.529 13 H 0.038 0.962 14 C 0.025 3.975 15 N -0.941 5.941 16 Si 0.935 3.065 17 H -0.271 1.271 18 H -0.296 1.296 19 H -0.213 1.213 20 O -0.389 6.389 21 S -0.048 6.048 22 N -0.582 5.582 23 H 0.041 0.959 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.175 0.825 27 H 0.060 0.940 28 H 0.106 0.894 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.266 0.734 32 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.071 20.665 0.050 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.037 4.037 3 H 0.155 0.845 4 C -0.196 4.196 5 C -0.214 4.214 6 C 0.064 3.936 7 H 0.119 0.881 8 C -0.168 4.168 9 C -0.170 4.170 10 C 0.109 3.891 11 H 0.052 0.948 12 C -0.567 4.567 13 H 0.056 0.944 14 C -0.174 4.174 15 N -0.581 5.581 16 Si 0.759 3.241 17 H -0.197 1.197 18 H -0.222 1.222 19 H -0.136 1.136 20 O -0.310 6.310 21 S 0.080 5.920 22 N -0.306 5.306 23 H 0.060 0.940 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.192 0.808 27 H 0.078 0.922 28 H 0.124 0.876 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.315 19.891 1.012 19.919 hybrid contribution -1.408 0.001 -0.806 1.623 sum -1.093 19.892 0.206 19.923 Atomic orbital electron populations 1.22389 0.93382 1.02407 1.04906 1.21599 0.95862 1.00750 0.85441 0.84544 1.23503 0.99851 0.94678 1.01544 1.23950 1.04154 0.97639 0.95660 1.21686 0.91102 0.86390 0.94460 0.88068 1.23093 0.95966 0.97038 1.00710 1.22818 0.96691 0.96671 1.00824 1.20635 0.88760 0.87051 0.92635 0.94799 1.21444 0.96933 0.99864 1.38422 0.94378 1.25967 1.01757 0.94830 0.94887 1.70067 1.24493 1.16922 1.46618 0.85963 0.77160 0.82935 0.78041 1.19657 1.22226 1.13564 1.89282 1.41440 1.19367 1.80865 1.86981 1.90943 1.09437 1.04606 1.67600 1.50042 1.03348 1.09589 0.94030 0.89583 0.89275 0.80790 0.92161 0.87594 0.92587 0.89221 0.92483 0.80995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 9.03 71.98 0.65 -2.30 16 2 C 0.07 1.48 3.72 43.55 0.16 1.64 16 3 H 0.14 2.01 8.14 -2.38 -0.02 1.99 16 4 C -0.17 -3.94 9.54 24.62 0.23 -3.70 16 5 C -0.10 -3.23 5.65 24.97 0.14 -3.09 16 6 C 0.12 4.29 3.82 30.61 0.12 4.40 16 7 H 0.10 2.92 8.13 -2.39 -0.02 2.90 16 8 C -0.13 -4.32 6.60 31.98 0.21 -4.11 16 9 C -0.13 -5.07 6.62 31.58 0.21 -4.86 16 10 C 0.17 7.85 2.70 30.22 0.08 7.93 16 11 H 0.03 1.57 7.53 -2.39 -0.02 1.55 16 12 C -0.53 -31.45 9.36 25.60 0.24 -31.21 16 13 H 0.04 2.48 7.58 -2.91 -0.02 2.46 16 14 C 0.02 1.50 5.47 84.66 0.46 1.97 16 15 N -0.94 -60.92 13.96 21.45 0.30 -60.62 16 16 Si 0.94 46.63 27.02 68.60 1.85 48.49 16 17 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 18 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 19 H -0.21 -10.16 5.41 99.48 0.54 -9.62 16 20 O -0.39 -18.04 7.94 -148.98 -1.18 -19.22 16 21 S -0.05 -1.69 23.48 -56.49 -1.33 -3.01 16 22 N -0.58 -14.29 8.23 -170.66 -1.40 -15.69 16 23 H 0.04 0.96 8.06 -2.39 -0.02 0.94 16 24 H 0.09 1.10 8.11 -2.39 -0.02 1.08 16 25 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.17 3.02 8.06 -2.91 -0.02 2.99 16 27 H 0.06 2.22 7.82 -2.39 -0.02 2.21 16 28 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.06 2.35 7.40 -2.39 -0.02 2.33 16 30 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.27 16.14 8.31 -92.70 -0.77 15.37 16 32 H 0.37 7.54 8.45 -91.21 -0.77 6.77 16 Total: -1.00 -72.83 274.78 0.92 -71.91 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.18 Total: 11.49 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: 2.51 Total: -33.34 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -1.11 Total: -76.31 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -1.18 Total: -19.22 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.85 Total: 48.49 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -1.33 Total: -3.01 kcal Total: -72.83 0.92 -71.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725629331.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.208 kcal (2) G-P(sol) polarization free energy of solvation -72.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds