Wall clock time and date at job start Mon Mar 30 2020 04:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.86775 * 2 1 4 4 H 1.07999 * 120.00152 * 120.69651 * 3 2 1 5 5 C 1.37877 * 119.99997 * 300.69983 * 3 2 1 6 6 N 1.31514 * 119.99933 * 179.97438 * 5 3 2 7 7 Si 1.86798 * 120.00071 * 0.02562 * 5 3 2 8 8 H 1.48503 * 109.47284 * 90.00044 * 7 5 3 9 9 H 1.48504 * 109.46591 * 209.99808 * 7 5 3 10 10 H 1.48495 * 109.47091 * 329.99617 * 7 5 3 11 11 C 1.54097 * 109.87704 * 121.16249 * 2 1 3 12 12 C 1.54807 * 104.18542 * 117.39748 * 11 2 1 13 13 C 1.54992 * 102.09527 * 339.11649 * 12 11 2 14 14 H 1.08997 * 110.61810 * 278.52331 * 13 12 11 15 15 C 1.50702 * 110.61811 * 155.52512 * 13 12 11 16 16 C 1.31734 * 126.52376 * 119.19550 * 15 13 12 17 17 C 1.49577 * 116.78858 * 180.02562 * 16 15 13 18 18 N 1.48307 * 110.75402 * 340.80078 * 17 16 15 19 19 S 1.77524 * 126.52445 * 299.49976 * 15 13 12 20 20 O 1.43741 * 109.88012 * 238.99510 * 2 1 3 21 21 H 1.09001 * 109.47002 * 179.54954 * 1 2 3 22 22 H 1.08993 * 109.46955 * 299.55391 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.55220 * 1 2 3 24 24 H 0.97001 * 120.00447 * 179.97438 * 6 5 3 25 25 H 1.09004 * 110.48516 * 236.07332 * 11 2 1 26 26 H 1.08996 * 110.48916 * 358.72193 * 11 2 1 27 27 H 1.08997 * 110.90635 * 220.91770 * 12 11 2 28 28 H 1.08999 * 110.91045 * 97.31936 * 12 11 2 29 29 H 1.08008 * 121.60892 * 0.23232 * 16 15 13 30 30 H 1.09003 * 109.38563 * 220.34432 * 17 16 15 31 31 H 1.08994 * 109.03330 * 101.03620 * 17 16 15 32 32 H 1.00901 * 110.99999 * 145.00792 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0422 1.4173 0.0000 4 1 2.6748 1.7629 0.8042 5 6 1.7032 2.2728 -1.0267 6 7 2.1497 3.5098 -1.0264 7 14 0.6084 1.6754 -2.4173 8 1 -0.8136 1.9266 -2.0708 9 1 0.9503 2.4050 -3.6648 10 1 0.8183 0.2196 -2.6220 11 6 2.0540 -0.7499 1.2401 12 6 2.8325 -1.9532 0.6549 13 6 2.2281 -2.0703 -0.7676 14 1 1.2815 -2.6098 -0.7392 15 6 3.1980 -2.7462 -1.7022 16 6 3.0022 -3.8744 -2.3537 17 6 4.1185 -4.3504 -3.2281 18 7 5.0469 -3.2387 -3.5470 19 16 4.8246 -2.1777 -2.1291 20 8 2.0189 -0.6963 -1.1586 21 1 -0.3633 -1.0276 -0.0081 22 1 -0.3633 0.5069 0.8939 23 1 -0.3633 0.5208 -0.8859 24 1 1.9116 4.1117 -1.7489 25 1 2.7197 -0.1103 1.8197 26 1 1.2238 -1.0957 1.8558 27 1 2.6433 -2.8574 1.2335 28 1 3.9003 -1.7399 0.6075 29 1 2.0787 -4.4272 -2.2635 30 1 3.7068 -4.7514 -4.1543 31 1 4.6655 -5.1376 -2.7093 32 1 5.9988 -3.5682 -3.6061 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725629729.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:30 Heat of formation + Delta-G solvation = 2.228145 kcal Electronic energy + Delta-G solvation = -15790.792308 eV Core-core repulsion = 13264.868784 eV Total energy + Delta-G solvation = -2525.923524 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -38.95982 -36.85412 -33.26872 -31.88945 -31.28199 -29.86303 -26.41737 -25.16400 -23.75370 -21.20863 -19.96410 -19.43572 -17.41106 -16.80876 -15.76161 -15.33714 -15.12040 -14.46371 -13.83742 -13.67649 -13.15935 -12.75827 -12.64987 -12.56585 -12.18724 -12.03368 -11.34025 -11.16948 -10.87604 -10.70634 -10.38037 -10.14242 -9.87467 -9.82692 -9.72780 -9.54317 -8.99524 -8.50284 -8.30524 -7.01786 -6.06634 -4.14366 1.66769 1.88083 2.26419 3.39791 3.52896 3.73988 4.32478 4.56689 4.61764 4.94578 5.08455 5.34126 5.39268 5.40094 5.49243 5.56974 5.78757 5.88851 6.07939 6.11989 6.21088 6.35311 6.40514 6.44214 6.54162 6.62880 6.64545 6.83638 7.21224 7.68748 8.17761 8.48102 8.93373 9.57932 11.03925 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.027787 B = 0.009106 C = 0.008291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.436638 B = 3074.013473 C = 3376.536476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.188 3.812 3 C -0.511 4.511 4 H 0.080 0.920 5 C 0.086 3.914 6 N -0.891 5.891 7 Si 0.879 3.121 8 H -0.289 1.289 9 H -0.302 1.302 10 H -0.225 1.225 11 C -0.128 4.128 12 C -0.141 4.141 13 C 0.127 3.873 14 H 0.073 0.927 15 C -0.065 4.065 16 C -0.208 4.208 17 C 0.056 3.944 18 N -0.602 5.602 19 S 0.031 5.969 20 O -0.348 6.348 21 H 0.031 0.969 22 H 0.061 0.939 23 H 0.047 0.953 24 H 0.265 0.735 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.144 0.856 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.749 -16.243 -0.394 16.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.151 3.849 3 C -0.548 4.548 4 H 0.098 0.902 5 C -0.119 4.119 6 N -0.527 5.527 7 Si 0.709 3.291 8 H -0.217 1.217 9 H -0.230 1.230 10 H -0.148 1.148 11 C -0.166 4.166 12 C -0.179 4.179 13 C 0.067 3.933 14 H 0.091 0.909 15 C -0.179 4.179 16 C -0.239 4.239 17 C -0.074 4.074 18 N -0.324 5.324 19 S 0.161 5.839 20 O -0.268 6.268 21 H 0.050 0.950 22 H 0.080 0.920 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.162 0.838 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.292 -14.874 -0.975 15.081 hybrid contribution -1.034 -1.608 -0.407 1.955 sum 1.258 -16.482 -1.382 16.588 Atomic orbital electron populations 1.22487 0.98526 0.98852 1.01650 1.20159 0.90023 0.92913 0.81850 1.20924 1.33014 0.90910 1.09970 0.90239 1.25031 0.95095 0.94290 0.97438 1.69904 1.44376 1.05539 1.32924 0.87045 0.79050 0.82020 0.80957 1.21683 1.22961 1.14820 1.22884 0.99130 0.95657 0.98956 1.23102 1.01052 0.98706 0.95057 1.21369 0.93194 0.88217 0.90562 0.90896 1.24187 0.97178 0.96562 0.99988 1.23008 1.00954 0.98597 1.01348 1.21617 0.92653 0.93295 0.99841 1.67106 1.12834 1.17438 1.34991 1.86553 1.15234 1.51964 1.30199 1.89466 1.86048 1.15541 1.35783 0.95021 0.91962 0.93429 0.92523 0.90493 0.92293 0.91489 0.90758 0.83819 0.88140 0.92027 0.82230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 8.09 37.16 0.30 -3.12 16 2 C 0.19 4.42 0.70 -91.20 -0.06 4.35 16 3 C -0.51 -14.50 8.87 -34.44 -0.31 -14.81 16 4 H 0.08 2.40 7.59 -52.49 -0.40 2.01 16 5 C 0.09 2.54 5.45 -17.82 -0.10 2.45 16 6 N -0.89 -27.74 13.96 55.43 0.77 -26.96 16 7 Si 0.88 23.08 23.92 -169.99 -4.07 19.01 16 8 H -0.29 -7.31 6.87 56.52 0.39 -6.92 16 9 H -0.30 -8.07 7.11 56.52 0.40 -7.67 16 10 H -0.22 -5.80 5.37 56.52 0.30 -5.50 16 11 C -0.13 -2.49 6.27 -25.21 -0.16 -2.65 16 12 C -0.14 -2.42 6.57 -24.73 -0.16 -2.58 16 13 C 0.13 2.37 3.77 -26.83 -0.10 2.27 16 14 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 15 C -0.07 -1.13 5.64 -36.19 -0.20 -1.33 16 16 C -0.21 -2.92 10.31 -36.73 -0.38 -3.30 16 17 C 0.06 0.67 7.04 -4.74 -0.03 0.64 16 18 N -0.60 -8.43 8.34 -11.01 -0.09 -8.52 16 19 S 0.03 0.54 23.57 -107.50 -2.53 -1.99 16 20 O -0.35 -8.31 7.58 -35.23 -0.27 -8.57 16 21 H 0.03 0.58 8.13 -51.93 -0.42 0.16 16 22 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 23 H 0.05 1.11 3.22 -51.93 -0.17 0.94 16 24 H 0.27 7.80 8.31 -40.82 -0.34 7.46 16 25 H 0.08 1.55 7.41 -51.93 -0.38 1.16 16 26 H 0.06 0.99 7.70 -51.93 -0.40 0.59 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.32 7.78 -51.93 -0.40 0.92 16 29 H 0.14 1.67 8.06 -52.48 -0.42 1.25 16 30 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.36 3.89 9.00 -36.91 -0.33 3.56 16 LS Contribution 267.30 15.07 4.03 4.03 Total: -1.00 -32.52 267.30 -7.65 -40.17 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -4.29 Total: 0.91 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -1.20 Total: -18.08 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.68 Total: -35.48 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.27 Total: -8.57 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.07 Total: 19.01 kcal Atomic # 16 Polarization: 0.54 SS G_CDS: -2.53 Total: -1.99 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.52 -7.65 -40.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725629729.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.401 kcal (2) G-P(sol) polarization free energy of solvation -32.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds