Wall clock time and date at job start Mon Mar 30 2020 04:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.86775 * 2 1 4 4 H 1.07999 * 120.00152 * 120.69651 * 3 2 1 5 5 C 1.37877 * 119.99997 * 300.69983 * 3 2 1 6 6 N 1.31514 * 119.99933 * 179.97438 * 5 3 2 7 7 Si 1.86798 * 120.00071 * 0.02562 * 5 3 2 8 8 H 1.48503 * 109.47284 * 90.00044 * 7 5 3 9 9 H 1.48504 * 109.46591 * 209.99808 * 7 5 3 10 10 H 1.48495 * 109.47091 * 329.99617 * 7 5 3 11 11 C 1.54097 * 109.87704 * 121.16249 * 2 1 3 12 12 C 1.54807 * 104.18542 * 117.39748 * 11 2 1 13 13 C 1.54992 * 102.09527 * 339.11649 * 12 11 2 14 14 H 1.08997 * 110.61810 * 278.52331 * 13 12 11 15 15 C 1.50702 * 110.61811 * 155.52512 * 13 12 11 16 16 C 1.31734 * 126.52376 * 119.19550 * 15 13 12 17 17 C 1.49577 * 116.78858 * 180.02562 * 16 15 13 18 18 N 1.48307 * 110.75402 * 340.80078 * 17 16 15 19 19 S 1.77524 * 126.52445 * 299.49976 * 15 13 12 20 20 O 1.43741 * 109.88012 * 238.99510 * 2 1 3 21 21 H 1.09001 * 109.47002 * 179.54954 * 1 2 3 22 22 H 1.08993 * 109.46955 * 299.55391 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.55220 * 1 2 3 24 24 H 0.97001 * 120.00447 * 179.97438 * 6 5 3 25 25 H 1.09004 * 110.48516 * 236.07332 * 11 2 1 26 26 H 1.08996 * 110.48916 * 358.72193 * 11 2 1 27 27 H 1.08997 * 110.90635 * 220.91770 * 12 11 2 28 28 H 1.08999 * 110.91045 * 97.31936 * 12 11 2 29 29 H 1.08008 * 121.60892 * 0.23232 * 16 15 13 30 30 H 1.09003 * 109.38563 * 220.34432 * 17 16 15 31 31 H 1.08994 * 109.03330 * 101.03620 * 17 16 15 32 32 H 1.00901 * 110.99999 * 145.00792 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0422 1.4173 0.0000 4 1 2.6748 1.7629 0.8042 5 6 1.7032 2.2728 -1.0267 6 7 2.1497 3.5098 -1.0264 7 14 0.6084 1.6754 -2.4173 8 1 -0.8136 1.9266 -2.0708 9 1 0.9503 2.4050 -3.6648 10 1 0.8183 0.2196 -2.6220 11 6 2.0540 -0.7499 1.2401 12 6 2.8325 -1.9532 0.6549 13 6 2.2281 -2.0703 -0.7676 14 1 1.2815 -2.6098 -0.7392 15 6 3.1980 -2.7462 -1.7022 16 6 3.0022 -3.8744 -2.3537 17 6 4.1185 -4.3504 -3.2281 18 7 5.0469 -3.2387 -3.5470 19 16 4.8246 -2.1777 -2.1291 20 8 2.0189 -0.6963 -1.1586 21 1 -0.3633 -1.0276 -0.0081 22 1 -0.3633 0.5069 0.8939 23 1 -0.3633 0.5208 -0.8859 24 1 1.9116 4.1117 -1.7489 25 1 2.7197 -0.1103 1.8197 26 1 1.2238 -1.0957 1.8558 27 1 2.6433 -2.8574 1.2335 28 1 3.9003 -1.7399 0.6075 29 1 2.0787 -4.4272 -2.2635 30 1 3.7068 -4.7514 -4.1543 31 1 4.6655 -5.1376 -2.7093 32 1 5.9988 -3.5682 -3.6061 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725629729.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:30 Heat of formation + Delta-G solvation = -21.720798 kcal Electronic energy + Delta-G solvation = -15791.830812 eV Core-core repulsion = 13264.868784 eV Total energy + Delta-G solvation = -2526.962028 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.54769 -37.95002 -35.11223 -33.49347 -32.94440 -31.35781 -27.78189 -27.06819 -25.13406 -22.60645 -21.23140 -21.09416 -18.98656 -18.49866 -17.09998 -16.89910 -16.56189 -15.85595 -15.49499 -15.01789 -14.79175 -14.57632 -14.07718 -13.91873 -13.81799 -13.49382 -12.90041 -12.72387 -12.49393 -12.19205 -12.01160 -11.80871 -11.71108 -11.40364 -11.10784 -10.81684 -10.77017 -10.68306 -10.05853 -8.33032 -8.23631 -6.42730 0.52323 0.74839 1.12414 1.30648 1.42230 1.66097 2.40930 2.93886 3.32455 3.50471 3.74385 3.94776 4.13524 4.18090 4.32562 4.40512 4.51215 4.56691 4.63030 4.72434 4.81105 4.91670 4.96979 5.00945 5.18764 5.22519 5.36310 5.53986 5.58007 5.67694 6.25114 6.45056 6.75310 7.33623 8.81752 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.027787 B = 0.009106 C = 0.008291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.436638 B = 3074.013473 C = 3376.536476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.182 3.818 3 C -0.515 4.515 4 H 0.039 0.961 5 C 0.029 3.971 6 N -0.943 5.943 7 Si 0.940 3.060 8 H -0.273 1.273 9 H -0.316 1.316 10 H -0.214 1.214 11 C -0.127 4.127 12 C -0.131 4.131 13 C 0.123 3.877 14 H 0.102 0.898 15 C -0.107 4.107 16 C -0.169 4.169 17 C 0.048 3.952 18 N -0.598 5.598 19 S -0.048 6.048 20 O -0.382 6.382 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.029 0.971 24 H 0.264 0.736 25 H 0.054 0.946 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.056 0.944 29 H 0.177 0.823 30 H 0.127 0.873 31 H 0.094 0.906 32 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.214 -20.350 -1.013 20.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.144 3.856 3 C -0.552 4.552 4 H 0.057 0.943 5 C -0.170 4.170 6 N -0.582 5.582 7 Si 0.768 3.232 8 H -0.200 1.200 9 H -0.245 1.245 10 H -0.137 1.137 11 C -0.165 4.165 12 C -0.168 4.168 13 C 0.064 3.936 14 H 0.119 0.881 15 C -0.220 4.220 16 C -0.199 4.199 17 C -0.082 4.082 18 N -0.322 5.322 19 S 0.080 5.920 20 O -0.303 6.303 21 H 0.090 0.910 22 H 0.086 0.914 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.110 0.890 27 H 0.127 0.873 28 H 0.075 0.925 29 H 0.194 0.806 30 H 0.145 0.855 31 H 0.112 0.888 32 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.752 -19.019 -1.574 19.098 hybrid contribution -0.466 -0.492 -0.215 0.711 sum 0.286 -19.511 -1.789 19.595 Atomic orbital electron populations 1.22415 0.96693 1.01205 1.01030 1.20104 0.91288 0.90503 0.83704 1.21312 1.31383 0.94269 1.08222 0.94314 1.25844 0.96783 0.94320 1.00041 1.70048 1.46999 1.07045 1.34154 0.86104 0.78013 0.81696 0.77339 1.20004 1.24493 1.13683 1.22830 1.00115 0.96002 0.97572 1.23051 0.99585 0.99197 0.94999 1.21628 0.94889 0.85801 0.91288 0.88090 1.24018 0.96541 0.98491 1.02980 1.23582 1.01944 0.96616 0.97786 1.21887 0.92144 0.93090 1.01082 1.67204 1.14527 1.17994 1.32497 1.86718 1.17455 1.54932 1.32854 1.89322 1.86426 1.18799 1.35745 0.91016 0.91414 0.95223 0.92680 0.92721 0.88982 0.87322 0.92529 0.80589 0.85495 0.88819 0.80525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.34 8.09 71.98 0.58 -5.76 16 2 C 0.18 8.37 0.70 -11.17 -0.01 8.36 16 3 C -0.51 -30.21 8.87 25.60 0.23 -29.98 16 4 H 0.04 2.50 7.59 -2.91 -0.02 2.48 16 5 C 0.03 1.77 5.45 84.65 0.46 2.23 16 6 N -0.94 -61.54 13.96 21.45 0.30 -61.24 16 7 Si 0.94 48.62 23.92 68.60 1.64 50.26 16 8 H -0.27 -13.21 6.87 99.48 0.68 -12.53 16 9 H -0.32 -16.79 7.11 99.48 0.71 -16.08 16 10 H -0.21 -10.61 5.37 99.48 0.53 -10.07 16 11 C -0.13 -4.75 6.27 31.58 0.20 -4.55 16 12 C -0.13 -4.15 6.57 31.89 0.21 -3.94 16 13 C 0.12 4.23 3.77 30.53 0.12 4.34 16 14 H 0.10 2.86 8.12 -2.39 -0.02 2.84 16 15 C -0.11 -3.40 5.64 24.97 0.14 -3.26 16 16 C -0.17 -3.92 10.31 24.62 0.25 -3.67 16 17 C 0.05 0.91 7.04 84.94 0.60 1.50 16 18 N -0.60 -15.24 8.34 -188.73 -1.57 -16.81 16 19 S -0.05 -1.66 23.57 -56.49 -1.33 -2.99 16 20 O -0.38 -17.70 7.58 -148.98 -1.13 -18.83 16 21 H 0.07 2.31 8.13 -2.39 -0.02 2.29 16 22 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 23 H 0.03 1.30 3.22 -2.39 -0.01 1.29 16 24 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 25 H 0.05 2.24 7.41 -2.39 -0.02 2.22 16 26 H 0.09 2.78 7.70 -2.39 -0.02 2.76 16 27 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.06 1.99 7.78 -2.39 -0.02 1.97 16 29 H 0.18 2.91 8.06 -2.91 -0.02 2.89 16 30 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.38 7.26 9.00 -91.21 -0.82 6.44 16 Total: -1.00 -74.84 267.30 0.79 -74.05 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.11 Total: 10.29 kcal Atomic # 6 Polarization: -37.50 SS G_CDS: 2.78 Total: -34.72 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -1.28 Total: -78.05 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -1.13 Total: -18.83 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 1.64 Total: 50.26 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -1.33 Total: -2.99 kcal Total: -74.84 0.79 -74.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725629729.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.326 kcal (2) G-P(sol) polarization free energy of solvation -74.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds