Wall clock time and date at job start Mon Mar 30 2020 04:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50708 * 109.86851 * 2 1 4 4 H 1.07991 * 119.99789 * 238.99824 * 3 2 1 5 5 C 1.37877 * 120.00008 * 58.99134 * 3 2 1 6 6 N 1.31514 * 120.00089 * 180.02562 * 5 3 2 7 7 Si 1.86798 * 119.99938 * 0.02562 * 5 3 2 8 8 H 1.48506 * 109.47297 * 269.99556 * 7 5 3 9 9 H 1.48503 * 109.47261 * 149.99737 * 7 5 3 10 10 H 1.48500 * 109.47454 * 29.99730 * 7 5 3 11 11 C 1.54102 * 109.87871 * 238.99607 * 2 1 3 12 12 C 1.54813 * 104.18458 * 242.45188 * 11 2 1 13 13 C 1.54998 * 102.09142 * 20.87958 * 12 11 2 14 14 H 1.09006 * 110.61905 * 81.47952 * 13 12 11 15 15 C 1.50704 * 110.61822 * 204.47155 * 13 12 11 16 16 C 1.31738 * 126.52491 * 244.99985 * 15 13 12 17 17 C 1.49578 * 116.78160 * 179.75864 * 16 15 13 18 18 N 1.48310 * 110.68515 * 19.66498 * 17 16 15 19 19 S 1.77531 * 126.51911 * 64.69043 * 15 13 12 20 20 O 1.43744 * 110.00294 * 121.08375 * 2 1 3 21 21 H 1.09005 * 109.47217 * 60.70149 * 1 2 3 22 22 H 1.08996 * 109.46664 * 180.70210 * 1 2 3 23 23 H 1.09006 * 109.46856 * 300.69946 * 1 2 3 24 24 H 0.96997 * 119.99848 * 180.02562 * 6 5 3 25 25 H 1.08994 * 110.48542 * 1.12691 * 11 2 1 26 26 H 1.08998 * 110.48718 * 123.64257 * 11 2 1 27 27 H 1.09001 * 110.90212 * 139.07440 * 12 11 2 28 28 H 1.08996 * 110.90797 * 262.64699 * 12 11 2 29 29 H 1.08003 * 121.60717 * 359.78273 * 16 15 13 30 30 H 1.08997 * 109.24273 * 139.98919 * 17 16 15 31 31 H 1.08993 * 109.24438 * 259.42154 * 17 16 15 32 32 H 1.00898 * 110.99614 * 214.76993 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0422 1.4174 0.0000 4 1 2.6788 1.7614 -0.8017 5 6 1.6980 2.2748 1.0234 6 7 2.1446 3.5118 1.0232 7 14 0.5974 1.6794 2.4103 8 1 -0.8232 1.9291 2.0569 9 1 0.9331 2.4117 3.6579 10 1 0.8071 0.2242 2.6189 11 6 2.0540 -0.7465 -1.2421 12 6 2.8358 -1.9493 -0.6602 13 6 2.2335 -2.0701 0.7629 14 1 1.2879 -2.6116 0.7348 15 6 3.2059 -2.7458 1.6951 16 6 3.0449 -3.9128 2.2847 17 6 4.1580 -4.3813 3.1673 18 7 5.0174 -3.2435 3.5752 19 16 4.7897 -2.1239 2.2017 20 8 2.0217 -0.6974 1.1568 21 1 -0.3634 0.5029 -0.8962 22 1 -0.3632 -1.0276 0.0126 23 1 -0.3633 0.5247 0.8837 24 1 1.9027 4.1148 1.7433 25 1 1.2237 -1.0928 -1.8575 26 1 2.7157 -0.1036 -1.8226 27 1 2.6477 -2.8528 -1.2402 28 1 3.9033 -1.7339 -0.6143 29 1 2.1524 -4.5030 2.1376 30 1 3.7379 -4.8511 4.0566 31 1 4.7619 -5.1105 2.6273 32 1 5.9825 -3.5282 3.6503 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725629730.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:35 Heat of formation + Delta-G solvation = 2.434655 kcal Electronic energy + Delta-G solvation = -15788.943241 eV Core-core repulsion = 13263.028672 eV Total energy + Delta-G solvation = -2525.914569 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = -1.08 seconds Orbital eigenvalues (eV) -38.95845 -36.85210 -33.26990 -31.88937 -31.28237 -29.85928 -26.41599 -25.16260 -23.74595 -21.22103 -19.96015 -19.43243 -17.40393 -16.80426 -15.76278 -15.32338 -15.11807 -14.46737 -13.84100 -13.68762 -13.15419 -12.75783 -12.63974 -12.55767 -12.18581 -12.02884 -11.36354 -11.17535 -10.87520 -10.70247 -10.37704 -10.14483 -9.87268 -9.82127 -9.72084 -9.53415 -8.99480 -8.50509 -8.30758 -7.01669 -6.06738 -4.14517 1.67436 1.88177 2.27042 3.39763 3.53038 3.74003 4.32533 4.56566 4.60856 4.94918 5.09120 5.34016 5.38971 5.39915 5.48964 5.57009 5.78351 5.88765 6.07995 6.11857 6.20846 6.34715 6.40469 6.44258 6.54120 6.62913 6.64452 6.83467 7.20887 7.68737 8.17791 8.48012 8.93275 9.57839 11.03835 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.027876 B = 0.009123 C = 0.008267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.219350 B = 3068.482658 C = 3386.162369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.188 3.812 3 C -0.512 4.512 4 H 0.080 0.920 5 C 0.086 3.914 6 N -0.891 5.891 7 Si 0.880 3.120 8 H -0.289 1.289 9 H -0.302 1.302 10 H -0.225 1.225 11 C -0.129 4.129 12 C -0.141 4.141 13 C 0.127 3.873 14 H 0.074 0.926 15 C -0.065 4.065 16 C -0.209 4.209 17 C 0.056 3.944 18 N -0.602 5.602 19 S 0.032 5.968 20 O -0.348 6.348 21 H 0.061 0.939 22 H 0.031 0.969 23 H 0.047 0.953 24 H 0.265 0.735 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.144 0.856 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.872 -16.184 0.303 16.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.150 3.850 3 C -0.548 4.548 4 H 0.098 0.902 5 C -0.119 4.119 6 N -0.527 5.527 7 Si 0.710 3.290 8 H -0.217 1.217 9 H -0.230 1.230 10 H -0.149 1.149 11 C -0.166 4.166 12 C -0.179 4.179 13 C 0.066 3.934 14 H 0.091 0.909 15 C -0.179 4.179 16 C -0.240 4.240 17 C -0.074 4.074 18 N -0.323 5.323 19 S 0.162 5.838 20 O -0.268 6.268 21 H 0.080 0.920 22 H 0.050 0.950 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.162 0.838 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.349 -14.810 0.954 15.026 hybrid contribution -0.961 -1.610 0.314 1.901 sum 1.388 -16.420 1.268 16.528 Atomic orbital electron populations 1.22485 0.98502 0.98863 1.01649 1.20156 0.90014 0.92920 0.81878 1.20928 1.32780 0.90880 1.10241 0.90244 1.25033 0.95127 0.94295 0.97401 1.69904 1.44325 1.05484 1.33029 0.87036 0.79073 0.81984 0.80931 1.21688 1.22959 1.14882 1.22887 0.99117 0.95675 0.98954 1.23094 1.01067 0.98697 0.95006 1.21373 0.93179 0.88242 0.90559 0.90883 1.24195 0.97392 0.96370 0.99923 1.22990 1.01150 0.97988 1.01891 1.21621 0.93474 0.93214 0.99112 1.67193 1.14787 1.14292 1.36056 1.86640 1.18729 1.46340 1.32118 1.89460 1.85920 1.15627 1.35828 0.91956 0.95009 0.93427 0.92521 0.92316 0.90490 0.91499 0.90760 0.83838 0.88172 0.92011 0.82267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.09 37.16 0.30 -3.11 16 2 C 0.19 4.41 0.69 -91.19 -0.06 4.34 16 3 C -0.51 -14.49 8.87 -34.44 -0.31 -14.80 16 4 H 0.08 2.40 7.58 -52.49 -0.40 2.00 16 5 C 0.09 2.54 5.45 -17.82 -0.10 2.45 16 6 N -0.89 -27.72 13.96 55.43 0.77 -26.95 16 7 Si 0.88 23.09 23.91 -169.99 -4.06 19.03 16 8 H -0.29 -7.31 6.87 56.52 0.39 -6.92 16 9 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 10 H -0.23 -5.82 5.39 56.52 0.30 -5.52 16 11 C -0.13 -2.49 6.27 -25.20 -0.16 -2.65 16 12 C -0.14 -2.41 6.57 -24.72 -0.16 -2.57 16 13 C 0.13 2.37 3.78 -26.83 -0.10 2.27 16 14 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 15 C -0.06 -1.12 5.62 -36.19 -0.20 -1.33 16 16 C -0.21 -2.92 10.31 -36.73 -0.38 -3.30 16 17 C 0.06 0.67 7.04 -4.74 -0.03 0.63 16 18 N -0.60 -8.42 8.36 -11.00 -0.09 -8.51 16 19 S 0.03 0.57 23.77 -107.50 -2.55 -1.99 16 20 O -0.35 -8.30 7.63 -35.23 -0.27 -8.57 16 21 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 1.11 3.18 -51.93 -0.16 0.94 16 24 H 0.27 7.79 8.31 -40.82 -0.34 7.45 16 25 H 0.06 0.99 7.69 -51.93 -0.40 0.59 16 26 H 0.08 1.55 7.40 -51.93 -0.38 1.16 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.32 7.96 -51.93 -0.41 0.91 16 29 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 30 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.36 3.90 9.00 -36.90 -0.33 3.57 16 LS Contribution 267.69 15.07 4.03 4.03 Total: -1.00 -32.49 267.69 -7.67 -40.16 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -4.30 Total: 0.85 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -1.20 Total: -18.06 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.68 Total: -35.46 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.27 Total: -8.57 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -4.06 Total: 19.03 kcal Atomic # 16 Polarization: 0.57 SS G_CDS: -2.55 Total: -1.99 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.49 -7.67 -40.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725629730.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.597 kcal (2) G-P(sol) polarization free energy of solvation -32.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.08 seconds