Wall clock time and date at job start Mon Mar 30 2020 04:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50708 * 109.86851 * 2 1 4 4 H 1.07991 * 119.99789 * 238.99824 * 3 2 1 5 5 C 1.37877 * 120.00008 * 58.99134 * 3 2 1 6 6 N 1.31514 * 120.00089 * 180.02562 * 5 3 2 7 7 Si 1.86798 * 119.99938 * 0.02562 * 5 3 2 8 8 H 1.48506 * 109.47297 * 269.99556 * 7 5 3 9 9 H 1.48503 * 109.47261 * 149.99737 * 7 5 3 10 10 H 1.48500 * 109.47454 * 29.99730 * 7 5 3 11 11 C 1.54102 * 109.87871 * 238.99607 * 2 1 3 12 12 C 1.54813 * 104.18458 * 242.45188 * 11 2 1 13 13 C 1.54998 * 102.09142 * 20.87958 * 12 11 2 14 14 H 1.09006 * 110.61905 * 81.47952 * 13 12 11 15 15 C 1.50704 * 110.61822 * 204.47155 * 13 12 11 16 16 C 1.31738 * 126.52491 * 244.99985 * 15 13 12 17 17 C 1.49578 * 116.78160 * 179.75864 * 16 15 13 18 18 N 1.48310 * 110.68515 * 19.66498 * 17 16 15 19 19 S 1.77531 * 126.51911 * 64.69043 * 15 13 12 20 20 O 1.43744 * 110.00294 * 121.08375 * 2 1 3 21 21 H 1.09005 * 109.47217 * 60.70149 * 1 2 3 22 22 H 1.08996 * 109.46664 * 180.70210 * 1 2 3 23 23 H 1.09006 * 109.46856 * 300.69946 * 1 2 3 24 24 H 0.96997 * 119.99848 * 180.02562 * 6 5 3 25 25 H 1.08994 * 110.48542 * 1.12691 * 11 2 1 26 26 H 1.08998 * 110.48718 * 123.64257 * 11 2 1 27 27 H 1.09001 * 110.90212 * 139.07440 * 12 11 2 28 28 H 1.08996 * 110.90797 * 262.64699 * 12 11 2 29 29 H 1.08003 * 121.60717 * 359.78273 * 16 15 13 30 30 H 1.08997 * 109.24273 * 139.98919 * 17 16 15 31 31 H 1.08993 * 109.24438 * 259.42154 * 17 16 15 32 32 H 1.00898 * 110.99614 * 214.76993 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0422 1.4174 0.0000 4 1 2.6788 1.7614 -0.8017 5 6 1.6980 2.2748 1.0234 6 7 2.1446 3.5118 1.0232 7 14 0.5974 1.6794 2.4103 8 1 -0.8232 1.9291 2.0569 9 1 0.9331 2.4117 3.6579 10 1 0.8071 0.2242 2.6189 11 6 2.0540 -0.7465 -1.2421 12 6 2.8358 -1.9493 -0.6602 13 6 2.2335 -2.0701 0.7629 14 1 1.2879 -2.6116 0.7348 15 6 3.2059 -2.7458 1.6951 16 6 3.0449 -3.9128 2.2847 17 6 4.1580 -4.3813 3.1673 18 7 5.0174 -3.2435 3.5752 19 16 4.7897 -2.1239 2.2017 20 8 2.0217 -0.6974 1.1568 21 1 -0.3634 0.5029 -0.8962 22 1 -0.3632 -1.0276 0.0126 23 1 -0.3633 0.5247 0.8837 24 1 1.9027 4.1148 1.7433 25 1 1.2237 -1.0928 -1.8575 26 1 2.7157 -0.1036 -1.8226 27 1 2.6477 -2.8528 -1.2402 28 1 3.9033 -1.7339 -0.6143 29 1 2.1524 -4.5030 2.1376 30 1 3.7379 -4.8511 4.0566 31 1 4.7619 -5.1105 2.6273 32 1 5.9825 -3.5282 3.6503 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725629730.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:33 Heat of formation + Delta-G solvation = -21.506312 kcal Electronic energy + Delta-G solvation = -15789.981399 eV Core-core repulsion = 13263.028672 eV Total energy + Delta-G solvation = -2526.952727 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.54472 -37.94786 -35.11394 -33.49107 -32.94488 -31.35238 -27.78134 -27.06496 -25.12633 -22.61470 -21.24269 -21.07517 -18.98351 -18.49094 -17.09928 -16.90148 -16.55035 -15.85685 -15.49603 -15.02617 -14.78971 -14.57209 -14.07631 -13.91898 -13.80711 -13.48267 -12.89562 -12.73798 -12.50407 -12.19853 -12.00449 -11.80859 -11.71318 -11.40371 -11.08898 -10.82082 -10.76236 -10.68690 -10.05692 -8.33119 -8.24113 -6.42789 0.52948 0.75017 1.12878 1.30478 1.42260 1.65943 2.40737 2.93375 3.32485 3.50319 3.74734 3.94790 4.13605 4.18615 4.32353 4.40610 4.51146 4.56444 4.63393 4.72361 4.80981 4.91453 4.97326 5.01092 5.18836 5.22470 5.36264 5.53738 5.57839 5.67713 6.25142 6.45272 6.75314 7.33587 8.81690 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.027876 B = 0.009123 C = 0.008267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.219350 B = 3068.482658 C = 3386.162369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.182 3.818 3 C -0.514 4.514 4 H 0.039 0.961 5 C 0.029 3.971 6 N -0.942 5.942 7 Si 0.941 3.059 8 H -0.273 1.273 9 H -0.316 1.316 10 H -0.215 1.215 11 C -0.128 4.128 12 C -0.130 4.130 13 C 0.123 3.877 14 H 0.102 0.898 15 C -0.106 4.106 16 C -0.169 4.169 17 C 0.047 3.953 18 N -0.596 5.596 19 S -0.050 6.050 20 O -0.382 6.382 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.029 0.971 24 H 0.264 0.736 25 H 0.091 0.909 26 H 0.054 0.946 27 H 0.109 0.891 28 H 0.056 0.944 29 H 0.178 0.822 30 H 0.128 0.872 31 H 0.094 0.906 32 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.365 -20.355 0.839 20.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.144 3.856 3 C -0.552 4.552 4 H 0.057 0.943 5 C -0.170 4.170 6 N -0.582 5.582 7 Si 0.769 3.231 8 H -0.200 1.200 9 H -0.245 1.245 10 H -0.138 1.138 11 C -0.165 4.165 12 C -0.168 4.168 13 C 0.064 3.936 14 H 0.119 0.881 15 C -0.220 4.220 16 C -0.199 4.199 17 C -0.082 4.082 18 N -0.321 5.321 19 S 0.078 5.922 20 O -0.303 6.303 21 H 0.086 0.914 22 H 0.090 0.910 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.110 0.890 26 H 0.073 0.927 27 H 0.127 0.873 28 H 0.075 0.925 29 H 0.195 0.805 30 H 0.146 0.854 31 H 0.111 0.889 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.838 -19.019 1.469 19.094 hybrid contribution -0.400 -0.480 0.145 0.641 sum 0.439 -19.499 1.614 19.571 Atomic orbital electron populations 1.22414 0.96691 1.01196 1.01036 1.20104 0.91266 0.90514 0.83747 1.21316 1.31137 0.94233 1.08487 0.94305 1.25841 0.96828 0.94324 0.99973 1.70048 1.46941 1.06981 1.34268 0.86096 0.78035 0.81624 0.77354 1.20000 1.24490 1.13809 1.22832 1.00117 0.96031 0.97548 1.23044 0.99583 0.99193 0.94934 1.21633 0.94860 0.85836 0.91293 0.88104 1.24020 0.96916 0.98089 1.02939 1.23567 1.01849 0.96243 0.98278 1.21897 0.93175 0.92839 1.00321 1.67297 1.16444 1.14611 1.33711 1.86814 1.20997 1.49606 1.34760 1.89319 1.86294 1.18874 1.35793 0.91378 0.91025 0.95246 0.92678 0.89008 0.92715 0.87288 0.92532 0.80517 0.85448 0.88860 0.80588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.34 8.09 71.98 0.58 -5.76 16 2 C 0.18 8.36 0.69 -11.16 -0.01 8.35 16 3 C -0.51 -30.19 8.87 25.60 0.23 -29.96 16 4 H 0.04 2.50 7.58 -2.92 -0.02 2.48 16 5 C 0.03 1.79 5.45 84.65 0.46 2.25 16 6 N -0.94 -61.53 13.96 21.45 0.30 -61.23 16 7 Si 0.94 48.70 23.91 68.60 1.64 50.34 16 8 H -0.27 -13.22 6.87 99.48 0.68 -12.54 16 9 H -0.32 -16.81 7.11 99.48 0.71 -16.10 16 10 H -0.22 -10.70 5.39 99.48 0.54 -10.17 16 11 C -0.13 -4.74 6.27 31.59 0.20 -4.54 16 12 C -0.13 -4.11 6.57 31.90 0.21 -3.90 16 13 C 0.12 4.22 3.78 30.53 0.12 4.33 16 14 H 0.10 2.86 8.13 -2.38 -0.02 2.84 16 15 C -0.11 -3.38 5.62 24.97 0.14 -3.24 16 16 C -0.17 -3.89 10.31 24.62 0.25 -3.64 16 17 C 0.05 0.90 7.04 84.94 0.60 1.49 16 18 N -0.60 -15.20 8.36 -188.73 -1.58 -16.78 16 19 S -0.05 -1.75 23.77 -56.49 -1.34 -3.09 16 20 O -0.38 -17.71 7.63 -148.98 -1.14 -18.84 16 21 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 22 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 23 H 0.03 1.29 3.18 -2.38 -0.01 1.28 16 24 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 25 H 0.09 2.77 7.69 -2.39 -0.02 2.75 16 26 H 0.05 2.24 7.40 -2.39 -0.02 2.22 16 27 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.06 1.98 7.96 -2.39 -0.02 1.96 16 29 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 30 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.38 7.29 9.00 -91.22 -0.82 6.47 16 Total: -1.00 -74.90 267.69 0.77 -74.13 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.11 Total: 10.10 kcal Atomic # 6 Polarization: -37.40 SS G_CDS: 2.78 Total: -34.63 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -1.28 Total: -78.01 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -1.14 Total: -18.84 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 1.64 Total: 50.34 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -1.34 Total: -3.09 kcal Total: -74.90 0.77 -74.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725629730.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.620 kcal (2) G-P(sol) polarization free energy of solvation -74.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds