Wall clock time and date at job start Mon Mar 30 2020 04:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47110 * 2 1 4 4 C 1.36936 * 120.00362 * 267.48564 * 3 2 1 5 5 H 1.07999 * 119.99994 * 246.49964 * 4 3 2 6 6 C 1.38955 * 120.00036 * 66.50613 * 4 3 2 7 7 N 1.31440 * 119.99871 * 11.31093 * 6 4 3 8 8 Si 1.86795 * 120.00146 * 191.31421 * 6 4 3 9 9 H 1.48494 * 109.47270 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47269 * 119.99853 * 8 6 4 11 11 H 1.48507 * 109.47016 * 239.99493 * 8 6 4 12 12 C 1.34782 * 119.99496 * 87.49063 * 3 2 1 13 13 O 1.21841 * 120.00253 * 5.79289 * 12 3 2 14 14 C 1.41165 * 119.99966 * 185.79348 * 12 3 2 15 15 C 1.33377 * 121.13869 * 174.80478 * 14 12 3 16 16 S 1.76509 * 110.07207 * 180.24325 * 15 14 12 17 17 C 1.81901 * 96.60398 * 359.64261 * 16 15 14 18 18 C 1.52992 * 110.24350 * 118.95685 * 17 16 15 19 19 C 1.48934 * 121.13580 * 354.78953 * 14 12 3 20 20 H 1.09001 * 109.47439 * 64.35870 * 1 2 3 21 21 H 1.08995 * 109.47471 * 184.36585 * 1 2 3 22 22 H 1.09010 * 109.46935 * 304.36261 * 1 2 3 23 23 H 1.09004 * 109.46983 * 240.00664 * 2 1 3 24 24 H 1.08994 * 109.47794 * 120.00495 * 2 1 3 25 25 H 0.96993 * 120.00029 * 180.02562 * 7 6 4 26 26 H 1.07999 * 124.96239 * 359.97438 * 15 14 12 27 27 H 1.09003 * 110.76968 * 241.45951 * 17 16 15 28 28 H 1.09002 * 109.47657 * 305.16865 * 18 17 16 29 29 H 1.09006 * 109.47153 * 65.16802 * 18 17 16 30 30 H 1.09007 * 109.47460 * 185.16561 * 18 17 16 31 31 H 1.09004 * 109.13303 * 300.48249 * 19 14 12 32 32 H 1.09005 * 109.13901 * 59.65483 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2956 2.0095 -1.1847 5 1 3.3128 2.2788 -1.4279 6 6 1.2682 2.3005 -2.0739 7 7 0.0159 2.1802 -1.6933 8 14 1.6669 2.8628 -3.8100 9 1 3.1402 2.9170 -3.9868 10 1 1.0857 1.9061 -4.7859 11 1 1.0914 4.2128 -4.0376 12 6 2.1947 2.0335 1.1662 13 8 2.0501 1.4434 2.2223 14 6 2.5471 3.4005 1.1640 15 6 2.6271 4.0939 2.3005 16 16 3.0801 5.7655 1.9597 17 6 3.1986 5.5859 0.1534 18 6 2.1943 6.5104 -0.5375 19 6 2.8425 4.1176 -0.1074 20 1 -0.3634 0.4447 -0.9265 21 1 -0.3634 -1.0246 0.0782 22 1 -0.3633 0.5801 0.8484 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 -0.7012 2.3830 -2.3141 26 1 2.4379 3.6924 3.2851 27 1 4.2107 5.7993 -0.1906 28 1 1.1942 6.3143 -0.1510 29 1 2.4622 7.5488 -0.3419 30 1 2.2111 6.3271 -1.6119 31 1 3.6800 3.6299 -0.6064 32 1 1.9664 4.0733 -0.7546 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725629741.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:01 Heat of formation + Delta-G solvation = -7.624883 kcal Electronic energy + Delta-G solvation = -16137.634621 eV Core-core repulsion = 13611.283838 eV Total energy + Delta-G solvation = -2526.350783 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.28845 -35.78451 -35.13453 -31.87895 -31.61306 -29.73234 -26.22019 -24.94898 -23.87495 -21.39311 -20.28106 -18.79065 -17.25487 -16.38456 -15.32527 -14.86288 -14.50511 -14.36297 -13.88931 -13.34023 -12.79312 -12.54712 -12.48872 -12.07126 -11.78315 -11.49629 -11.43804 -11.08697 -11.05007 -10.86764 -10.82206 -10.57307 -10.31810 -9.85304 -9.65529 -9.54078 -8.88786 -8.54156 -7.30193 -6.84212 -6.40945 -4.41337 2.00000 2.21687 2.76980 2.99273 3.11060 3.12856 3.93902 4.42839 4.75771 4.98829 5.20315 5.26943 5.46729 5.77586 5.95373 6.07489 6.27065 6.36796 6.49266 6.53886 6.56223 6.70130 6.72205 6.77049 6.91129 7.15142 7.26971 7.34167 7.81652 8.10393 8.26402 8.91201 9.37845 9.87436 10.50039 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.020459 B = 0.012688 C = 0.008573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.261107 B = 2206.218264 C = 3265.275451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.124 3.876 3 N -0.437 5.437 4 C -0.350 4.350 5 H 0.087 0.913 6 C 0.055 3.945 7 N -0.841 5.841 8 Si 0.903 3.097 9 H -0.264 1.264 10 H -0.277 1.277 11 H -0.276 1.276 12 C 0.536 3.464 13 O -0.605 6.605 14 C -0.125 4.125 15 C -0.108 4.108 16 S -0.184 6.184 17 C -0.070 4.070 18 C -0.133 4.133 19 C -0.081 4.081 20 H 0.108 0.892 21 H 0.022 0.978 22 H 0.039 0.961 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.270 0.730 26 H 0.162 0.838 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.214 4.935 -1.859 6.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.000 4.000 3 N -0.156 5.156 4 C -0.478 4.478 5 H 0.104 0.896 6 C -0.153 4.153 7 N -0.475 5.475 8 Si 0.728 3.272 9 H -0.188 1.188 10 H -0.203 1.203 11 H -0.202 1.202 12 C 0.325 3.675 13 O -0.493 6.493 14 C -0.139 4.139 15 C -0.242 4.242 16 S 0.057 5.943 17 C -0.198 4.198 18 C -0.192 4.192 19 C -0.118 4.118 20 H 0.126 0.874 21 H 0.041 0.959 22 H 0.059 0.941 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.179 0.821 27 H 0.116 0.884 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.140 5.709 -0.698 6.552 hybrid contribution -0.231 -0.882 -1.650 1.885 sum 2.909 4.827 -2.347 6.105 Atomic orbital electron populations 1.22441 0.96231 0.98115 1.05806 1.21269 0.94828 0.84490 0.99378 1.43207 1.57613 1.10320 1.04457 1.19336 0.93624 1.39868 0.95002 0.89606 1.25747 0.94952 0.95004 0.99585 1.69820 0.98970 1.43354 1.35357 0.86248 0.79442 0.78767 0.82697 1.18782 1.20255 1.20171 1.16909 0.79938 0.86104 0.84508 1.90678 1.57618 1.69259 1.31716 1.20302 1.02873 0.96657 0.94028 1.25213 1.03372 0.94244 1.01329 1.85379 1.86163 1.13301 1.09472 1.24013 1.02856 1.00849 0.92114 1.21918 0.99000 0.97925 1.00341 1.21398 1.05467 0.87937 0.96995 0.87385 0.95903 0.94136 0.92372 0.93372 0.91897 0.82068 0.88359 0.91509 0.92642 0.91473 0.88586 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.85 9.58 37.16 0.36 -3.50 16 2 C 0.12 2.88 6.01 -4.04 -0.02 2.86 16 3 N -0.44 -10.76 2.32 -118.19 -0.27 -11.04 16 4 C -0.35 -8.18 5.53 -15.01 -0.08 -8.26 16 5 H 0.09 1.94 5.99 -52.49 -0.31 1.62 16 6 C 0.06 1.27 4.14 -17.45 -0.07 1.20 16 7 N -0.84 -20.48 10.00 55.50 0.56 -19.92 16 8 Si 0.90 17.64 29.57 -169.99 -5.03 12.62 16 9 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 10 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 11 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 12 C 0.54 13.54 7.37 -15.15 -0.11 13.43 16 13 O -0.61 -16.59 15.94 5.06 0.08 -16.50 16 14 C -0.12 -2.77 5.74 -106.05 -0.61 -3.38 16 15 C -0.11 -2.20 10.53 29.03 0.31 -1.89 16 16 S -0.18 -3.20 22.61 -107.50 -2.43 -5.63 16 17 C -0.07 -1.14 3.94 -26.56 -0.10 -1.24 16 18 C -0.13 -1.96 9.02 37.15 0.34 -1.62 16 19 C -0.08 -1.58 3.95 -28.55 -0.11 -1.69 16 20 H 0.11 2.62 5.04 -51.93 -0.26 2.36 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.04 1.00 8.14 -51.92 -0.42 0.58 16 23 H 0.06 1.27 8.02 -51.93 -0.42 0.86 16 24 H 0.05 1.12 7.42 -51.93 -0.39 0.74 16 25 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 26 H 0.16 3.25 7.80 -52.49 -0.41 2.84 16 27 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 1.85 5.96 -51.93 -0.31 1.54 16 32 H 0.13 2.69 5.10 -51.93 -0.26 2.42 16 LS Contribution 270.05 15.07 4.07 4.07 Total: -1.00 -26.74 270.05 -7.18 -33.92 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -4.03 Total: 6.60 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -0.12 Total: -4.11 kcal Atomic # 7 Polarization: -31.24 SS G_CDS: 0.28 Total: -30.96 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.08 Total: -16.50 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.62 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -2.43 Total: -5.63 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -26.74 -7.18 -33.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725629741.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.295 kcal (2) G-P(sol) polarization free energy of solvation -26.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds