Wall clock time and date at job start Mon Mar 30 2020 04:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47110 * 2 1 4 4 C 1.36936 * 120.00362 * 267.48564 * 3 2 1 5 5 H 1.07999 * 119.99994 * 246.49964 * 4 3 2 6 6 C 1.38955 * 120.00036 * 66.50613 * 4 3 2 7 7 N 1.31440 * 119.99871 * 11.31093 * 6 4 3 8 8 Si 1.86795 * 120.00146 * 191.31421 * 6 4 3 9 9 H 1.48494 * 109.47270 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47269 * 119.99853 * 8 6 4 11 11 H 1.48507 * 109.47016 * 239.99493 * 8 6 4 12 12 C 1.34782 * 119.99496 * 87.49063 * 3 2 1 13 13 O 1.21841 * 120.00253 * 5.79289 * 12 3 2 14 14 C 1.41165 * 119.99966 * 185.79348 * 12 3 2 15 15 C 1.33377 * 121.13869 * 174.80478 * 14 12 3 16 16 S 1.76509 * 110.07207 * 180.24325 * 15 14 12 17 17 C 1.81901 * 96.60398 * 359.64261 * 16 15 14 18 18 C 1.52992 * 110.24350 * 118.95685 * 17 16 15 19 19 C 1.48934 * 121.13580 * 354.78953 * 14 12 3 20 20 H 1.09001 * 109.47439 * 64.35870 * 1 2 3 21 21 H 1.08995 * 109.47471 * 184.36585 * 1 2 3 22 22 H 1.09010 * 109.46935 * 304.36261 * 1 2 3 23 23 H 1.09004 * 109.46983 * 240.00664 * 2 1 3 24 24 H 1.08994 * 109.47794 * 120.00495 * 2 1 3 25 25 H 0.96993 * 120.00029 * 180.02562 * 7 6 4 26 26 H 1.07999 * 124.96239 * 359.97438 * 15 14 12 27 27 H 1.09003 * 110.76968 * 241.45951 * 17 16 15 28 28 H 1.09002 * 109.47657 * 305.16865 * 18 17 16 29 29 H 1.09006 * 109.47153 * 65.16802 * 18 17 16 30 30 H 1.09007 * 109.47460 * 185.16561 * 18 17 16 31 31 H 1.09004 * 109.13303 * 300.48249 * 19 14 12 32 32 H 1.09005 * 109.13901 * 59.65483 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2956 2.0095 -1.1847 5 1 3.3128 2.2788 -1.4279 6 6 1.2682 2.3005 -2.0739 7 7 0.0159 2.1802 -1.6933 8 14 1.6669 2.8628 -3.8100 9 1 3.1402 2.9170 -3.9868 10 1 1.0857 1.9061 -4.7859 11 1 1.0914 4.2128 -4.0376 12 6 2.1947 2.0335 1.1662 13 8 2.0501 1.4434 2.2223 14 6 2.5471 3.4005 1.1640 15 6 2.6271 4.0939 2.3005 16 16 3.0801 5.7655 1.9597 17 6 3.1986 5.5859 0.1534 18 6 2.1943 6.5104 -0.5375 19 6 2.8425 4.1176 -0.1074 20 1 -0.3634 0.4447 -0.9265 21 1 -0.3634 -1.0246 0.0782 22 1 -0.3633 0.5801 0.8484 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 -0.7012 2.3830 -2.3141 26 1 2.4379 3.6924 3.2851 27 1 4.2107 5.7993 -0.1906 28 1 1.1942 6.3143 -0.1510 29 1 2.4622 7.5488 -0.3419 30 1 2.2111 6.3271 -1.6119 31 1 3.6800 3.6299 -0.6064 32 1 1.9664 4.0733 -0.7546 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725629741.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:01 Heat of formation + Delta-G solvation = -21.667149 kcal Electronic energy + Delta-G solvation = -16138.243539 eV Core-core repulsion = 13611.283838 eV Total energy + Delta-G solvation = -2526.959702 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.11229 -37.37395 -37.01968 -33.67802 -33.10697 -31.57041 -27.75842 -26.71495 -25.55587 -23.04124 -21.92740 -20.57772 -18.94041 -18.02088 -16.96807 -16.71297 -16.07321 -16.02867 -15.58405 -14.95320 -14.39617 -14.27419 -13.93594 -13.79944 -13.40004 -13.26012 -13.07681 -12.64895 -12.57973 -12.44818 -12.23088 -12.13108 -11.99053 -11.56869 -11.36735 -11.07302 -10.65897 -10.38610 -9.15384 -8.37928 -8.14911 -6.23993 0.28057 0.77286 1.28128 1.46289 1.53208 1.63497 2.29333 2.58962 2.99310 3.19554 3.79964 3.96785 4.05887 4.33297 4.42221 4.69233 4.70453 4.83243 4.86801 4.87195 5.01563 5.02035 5.10501 5.15891 5.28515 5.32535 5.47266 5.70187 5.93118 6.25270 6.43923 7.11319 7.48182 8.01845 8.75151 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.020459 B = 0.012688 C = 0.008573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.261107 B = 2206.218264 C = 3265.275451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.119 3.881 3 N -0.443 5.443 4 C -0.360 4.360 5 H 0.095 0.905 6 C 0.026 3.974 7 N -0.873 5.873 8 Si 0.966 3.034 9 H -0.252 1.252 10 H -0.283 1.283 11 H -0.271 1.271 12 C 0.519 3.481 13 O -0.643 6.643 14 C -0.159 4.159 15 C -0.104 4.104 16 S -0.145 6.145 17 C -0.069 4.069 18 C -0.130 4.130 19 C -0.070 4.070 20 H 0.099 0.901 21 H 0.050 0.950 22 H 0.009 0.991 23 H 0.071 0.929 24 H 0.041 0.959 25 H 0.272 0.728 26 H 0.155 0.845 27 H 0.128 0.872 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.186 6.593 -3.328 8.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.004 4.004 3 N -0.161 5.161 4 C -0.488 4.488 5 H 0.112 0.888 6 C -0.179 4.179 7 N -0.507 5.507 8 Si 0.789 3.211 9 H -0.175 1.175 10 H -0.209 1.209 11 H -0.196 1.196 12 C 0.310 3.690 13 O -0.534 6.534 14 C -0.173 4.173 15 C -0.238 4.238 16 S 0.097 5.903 17 C -0.197 4.197 18 C -0.189 4.189 19 C -0.107 4.107 20 H 0.117 0.883 21 H 0.069 0.931 22 H 0.029 0.971 23 H 0.090 0.910 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.173 0.827 27 H 0.146 0.854 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.125 7.383 -2.176 8.733 hybrid contribution -0.541 -1.385 -1.120 1.861 sum 3.584 5.998 -3.296 7.726 Atomic orbital electron populations 1.22300 0.95973 0.99192 1.03865 1.21357 0.95035 0.84457 0.99593 1.43448 1.57070 1.10729 1.04882 1.19583 0.94247 1.40361 0.94570 0.88816 1.26388 0.94388 0.94490 1.02664 1.69926 0.99950 1.44168 1.36625 0.85279 0.79770 0.78193 0.77825 1.17519 1.20854 1.19587 1.17490 0.79819 0.87457 0.84251 1.90627 1.59594 1.70347 1.32822 1.20372 1.05399 0.95695 0.95879 1.25449 1.01108 0.96510 1.00783 1.85239 1.85046 1.09803 1.10215 1.24148 1.05062 0.98939 0.91541 1.21910 0.97432 0.98871 1.00690 1.21172 1.04496 0.89813 0.95243 0.88255 0.93125 0.97127 0.91028 0.94075 0.91763 0.82728 0.85420 0.93322 0.90128 0.90367 0.88634 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.22 9.58 71.98 0.69 -6.53 16 2 C 0.12 5.61 6.01 86.38 0.52 6.13 16 3 N -0.44 -22.18 2.32 -645.98 -1.50 -23.67 16 4 C -0.36 -16.68 5.53 84.07 0.46 -16.22 16 5 H 0.09 4.14 5.99 -2.91 -0.02 4.12 16 6 C 0.03 1.19 4.14 84.92 0.35 1.54 16 7 N -0.87 -42.48 10.00 21.67 0.22 -42.27 16 8 Si 0.97 34.89 29.57 68.60 2.03 36.92 16 9 H -0.25 -8.55 7.11 99.48 0.71 -7.85 16 10 H -0.28 -10.45 7.11 99.48 0.71 -9.74 16 11 H -0.27 -9.50 7.11 99.48 0.71 -8.80 16 12 C 0.52 26.92 7.37 84.96 0.63 27.54 16 13 O -0.64 -36.62 15.94 -4.80 -0.08 -36.70 16 14 C -0.16 -7.09 5.74 -20.79 -0.12 -7.21 16 15 C -0.10 -4.23 10.53 66.72 0.70 -3.53 16 16 S -0.14 -4.71 22.61 -56.49 -1.28 -5.98 16 17 C -0.07 -2.04 3.94 30.70 0.12 -1.92 16 18 C -0.13 -3.42 9.02 71.98 0.65 -2.77 16 19 C -0.07 -2.64 3.95 29.41 0.12 -2.53 16 20 H 0.10 4.86 5.04 -2.39 -0.01 4.85 16 21 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 22 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 23 H 0.07 3.13 8.02 -2.38 -0.02 3.11 16 24 H 0.04 1.97 7.42 -2.39 -0.02 1.95 16 25 H 0.27 12.52 8.31 -92.71 -0.77 11.75 16 26 H 0.16 6.36 7.80 -2.91 -0.02 6.33 16 27 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.08 1.90 8.14 -2.38 -0.02 1.89 16 31 H 0.10 3.55 5.96 -2.38 -0.01 3.54 16 32 H 0.11 4.41 5.10 -2.38 -0.01 4.40 16 Total: -1.00 -57.58 270.05 4.64 -52.95 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 1.12 Total: 24.25 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 4.12 Total: -5.50 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: -1.28 Total: -65.94 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -0.08 Total: -36.70 kcal Atomic # 14 Polarization: 34.89 SS G_CDS: 2.03 Total: 36.92 kcal Atomic # 16 Polarization: -4.71 SS G_CDS: -1.28 Total: -5.98 kcal Total: -57.58 4.64 -52.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725629741.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.279 kcal (2) G-P(sol) polarization free energy of solvation -57.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds