Wall clock time and date at job start Mon Mar 30 2020 04:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.31319 * 125.92746 * 2 1 4 4 C 1.49617 * 118.46585 * 180.16248 * 3 2 1 5 5 C 1.54786 * 109.53603 * 341.04422 * 4 3 2 6 6 C 1.52997 * 111.23162 * 143.68669 * 5 4 3 7 7 N 1.46503 * 109.47498 * 179.97438 * 6 5 4 8 8 C 1.46499 * 119.99689 * 89.99538 * 7 6 5 9 9 C 1.34776 * 120.00140 * 270.00265 * 7 6 5 10 10 O 1.21693 * 119.99746 * 359.97438 * 9 7 6 11 11 C 1.46371 * 120.00070 * 179.97438 * 9 7 6 12 12 H 1.07998 * 119.99719 * 355.23802 * 11 9 7 13 13 C 1.40046 * 120.00097 * 175.24660 * 11 9 7 14 14 N 1.30671 * 120.00119 * 6.27524 * 13 11 9 15 15 Si 1.86799 * 120.00040 * 186.28176 * 13 11 9 16 16 H 1.48500 * 109.47386 * 94.97887 * 15 13 11 17 17 H 1.48503 * 109.46910 * 214.97724 * 15 13 11 18 18 H 1.48501 * 109.47084 * 334.97666 * 15 13 11 19 19 S 1.77554 * 125.93272 * 179.97438 * 2 1 3 20 20 H 1.09001 * 109.47115 * 90.00048 * 1 2 3 21 21 H 1.09000 * 109.47076 * 210.00058 * 1 2 3 22 22 H 1.08992 * 109.46986 * 329.99718 * 1 2 3 23 23 H 1.07997 * 120.77322 * 0.18435 * 3 2 1 24 24 H 1.09003 * 109.46897 * 221.01386 * 4 3 2 25 25 H 1.09000 * 109.46636 * 101.07526 * 4 3 2 26 26 H 1.09005 * 111.23102 * 268.07251 * 5 4 3 27 27 H 1.08995 * 109.46789 * 59.99923 * 6 5 4 28 28 H 1.08998 * 109.46847 * 299.99871 * 6 5 4 29 29 H 1.09004 * 109.46775 * 90.00385 * 8 7 6 30 30 H 1.09001 * 109.47653 * 330.00454 * 8 7 6 31 31 H 1.09003 * 109.47206 * 210.00281 * 8 7 6 32 32 H 0.97002 * 119.99969 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0634 0.0000 4 6 3.7611 0.8691 -0.0037 5 6 4.0962 -0.5669 0.4670 6 6 5.2994 -1.1317 -0.2907 7 7 5.5828 -2.4883 0.1842 8 6 4.9462 -3.6385 -0.4623 9 6 6.4289 -2.6782 1.2159 10 8 6.9579 -1.7227 1.7527 11 6 6.7115 -4.0336 1.6907 12 1 6.1845 -4.8753 1.2663 13 6 7.6652 -4.2389 2.6956 14 7 8.2134 -3.2154 3.2950 15 14 8.1536 -5.9760 3.1788 16 1 9.3737 -6.3733 2.4313 17 1 8.4287 -6.0252 4.6373 18 1 7.0467 -6.9104 2.8521 19 16 2.5490 -1.4377 0.0006 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5138 23 1 1.8504 2.0553 0.0030 24 1 4.2235 1.5897 0.6708 25 1 4.1445 1.0193 -1.0129 26 1 4.2600 -0.6011 1.5441 27 1 6.1686 -0.4973 -0.1168 28 1 5.0770 -1.1588 -1.3574 29 1 5.5753 -3.9897 -1.2803 30 1 3.9728 -3.3427 -0.8538 31 1 4.8168 -4.4391 0.2660 32 1 8.8742 -3.3577 3.9908 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725629742.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:10 Heat of formation + Delta-G solvation = -22.706721 kcal Electronic energy + Delta-G solvation = -15183.853789 eV Core-core repulsion = 12656.849008 eV Total energy + Delta-G solvation = -2527.004781 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -37.94102 -36.58575 -34.16428 -32.45139 -31.98323 -28.60410 -26.18928 -25.50463 -23.91018 -22.27508 -19.33164 -19.09231 -16.67579 -15.99568 -15.47726 -15.25052 -14.58714 -14.20133 -14.07664 -13.52039 -13.48369 -12.88434 -12.48540 -12.16750 -11.78446 -11.65445 -11.55402 -11.39862 -11.35067 -11.05354 -10.93242 -10.61323 -10.26191 -10.13980 -9.85253 -9.39492 -8.85306 -7.61458 -7.36028 -7.09377 -6.21278 -4.64602 1.86400 2.07575 2.69395 3.13774 3.21251 3.24723 4.08082 4.42167 4.56795 4.81155 5.02345 5.22636 5.33534 5.45535 5.52525 5.70225 5.74282 5.77799 5.85842 5.94338 6.12711 6.18976 6.28265 6.35921 6.55705 6.59630 6.62666 7.45234 7.58707 8.12450 8.33705 9.02032 9.39483 10.55512 10.74255 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.042316 B = 0.005979 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.527468 B = 4682.203217 C = 4915.471636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.115 4.115 3 C -0.186 4.186 4 C -0.094 4.094 5 C -0.054 4.054 6 C 0.147 3.853 7 N -0.646 5.646 8 C 0.100 3.900 9 C 0.556 3.444 10 O -0.578 6.578 11 C -0.542 4.542 12 H 0.073 0.927 13 C 0.088 3.912 14 N -0.767 5.767 15 Si 0.906 3.094 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.264 1.264 19 S -0.180 6.180 20 H 0.072 0.928 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.125 0.875 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.032 0.968 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.023 4.492 -7.060 13.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.227 4.227 3 C -0.214 4.214 4 C -0.132 4.132 5 C -0.184 4.184 6 C 0.021 3.979 7 N -0.384 5.384 8 C -0.045 4.045 9 C 0.362 3.638 10 O -0.461 6.461 11 C -0.579 4.579 12 H 0.091 0.909 13 C -0.132 4.132 14 N -0.395 5.395 15 Si 0.731 3.269 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.188 1.188 19 S 0.059 5.941 20 H 0.090 0.910 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.142 0.858 24 H 0.104 0.896 25 H 0.106 0.894 26 H 0.124 0.876 27 H 0.107 0.893 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.811 3.791 -6.842 13.344 hybrid contribution 0.348 0.444 0.500 0.754 sum -10.463 4.235 -6.342 12.947 Atomic orbital electron populations 1.20350 0.88552 1.02874 1.02421 1.23993 0.98609 0.96359 1.03745 1.22842 0.94663 0.98782 1.05155 1.21117 0.93235 0.96070 1.02818 1.24951 0.94136 0.94266 1.05041 1.20912 0.94437 0.86999 0.95574 1.47994 1.49695 1.03359 1.37304 1.21485 0.95470 0.90205 0.97317 1.18282 0.77149 0.90746 0.77609 1.90590 1.53701 1.43618 1.58225 1.21015 1.23653 0.91856 1.21337 0.90884 1.25733 0.94914 0.97899 0.94660 1.70026 1.20624 1.30944 1.17948 0.86378 0.79465 0.83027 0.78043 1.19779 1.20457 1.18809 1.86410 1.06183 1.14496 1.87007 0.90961 0.91069 0.91106 0.85763 0.89635 0.89445 0.87581 0.89309 0.91681 0.94941 0.93175 0.91011 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.40 36.01 0.37 -0.50 16 2 C -0.11 -1.59 6.56 -36.11 -0.24 -1.83 16 3 C -0.19 -2.44 10.12 -36.63 -0.37 -2.81 16 4 C -0.09 -1.32 5.99 -27.46 -0.16 -1.49 16 5 C -0.05 -0.96 3.73 -25.79 -0.10 -1.06 16 6 C 0.15 2.85 4.88 -4.04 -0.02 2.83 16 7 N -0.65 -14.81 2.83 -183.25 -0.52 -15.32 16 8 C 0.10 1.95 9.89 59.85 0.59 2.54 16 9 C 0.56 15.79 7.61 -12.99 -0.10 15.69 16 10 O -0.58 -18.42 14.62 5.20 0.08 -18.35 16 11 C -0.54 -15.32 8.76 -35.63 -0.31 -15.63 16 12 H 0.07 1.91 5.95 -52.49 -0.31 1.59 16 13 C 0.09 2.45 5.49 -17.37 -0.10 2.35 16 14 N -0.77 -22.92 11.85 55.55 0.66 -22.26 16 15 Si 0.91 20.19 29.56 -169.99 -5.03 15.16 16 16 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 18 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 19 S -0.18 -3.02 20.38 -107.50 -2.19 -5.22 16 20 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 21 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 24 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.09 1.12 7.85 -51.93 -0.41 0.71 16 26 H 0.11 2.24 8.14 -51.93 -0.42 1.82 16 27 H 0.09 1.84 7.42 -51.93 -0.39 1.46 16 28 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.88 6.08 -51.93 -0.32 0.56 16 31 H 0.07 1.46 6.04 -51.93 -0.31 1.15 16 32 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 LS Contribution 280.62 15.07 4.23 4.23 Total: -1.00 -33.27 280.62 -7.45 -40.72 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -4.25 Total: 0.93 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -0.43 Total: 0.11 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.14 Total: -37.58 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.08 Total: -18.35 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -2.19 Total: -5.22 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.27 -7.45 -40.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725629742.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.013 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds