Wall clock time and date at job start Mon Mar 30 2020 04:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.31319 * 125.92746 * 2 1 4 4 C 1.49617 * 118.46585 * 180.16248 * 3 2 1 5 5 C 1.54786 * 109.53603 * 341.04422 * 4 3 2 6 6 C 1.52997 * 111.23162 * 143.68669 * 5 4 3 7 7 N 1.46503 * 109.47498 * 179.97438 * 6 5 4 8 8 C 1.46499 * 119.99689 * 89.99538 * 7 6 5 9 9 C 1.34776 * 120.00140 * 270.00265 * 7 6 5 10 10 O 1.21693 * 119.99746 * 359.97438 * 9 7 6 11 11 C 1.46371 * 120.00070 * 179.97438 * 9 7 6 12 12 H 1.07998 * 119.99719 * 355.23802 * 11 9 7 13 13 C 1.40046 * 120.00097 * 175.24660 * 11 9 7 14 14 N 1.30671 * 120.00119 * 6.27524 * 13 11 9 15 15 Si 1.86799 * 120.00040 * 186.28176 * 13 11 9 16 16 H 1.48500 * 109.47386 * 94.97887 * 15 13 11 17 17 H 1.48503 * 109.46910 * 214.97724 * 15 13 11 18 18 H 1.48501 * 109.47084 * 334.97666 * 15 13 11 19 19 S 1.77554 * 125.93272 * 179.97438 * 2 1 3 20 20 H 1.09001 * 109.47115 * 90.00048 * 1 2 3 21 21 H 1.09000 * 109.47076 * 210.00058 * 1 2 3 22 22 H 1.08992 * 109.46986 * 329.99718 * 1 2 3 23 23 H 1.07997 * 120.77322 * 0.18435 * 3 2 1 24 24 H 1.09003 * 109.46897 * 221.01386 * 4 3 2 25 25 H 1.09000 * 109.46636 * 101.07526 * 4 3 2 26 26 H 1.09005 * 111.23102 * 268.07251 * 5 4 3 27 27 H 1.08995 * 109.46789 * 59.99923 * 6 5 4 28 28 H 1.08998 * 109.46847 * 299.99871 * 6 5 4 29 29 H 1.09004 * 109.46775 * 90.00385 * 8 7 6 30 30 H 1.09001 * 109.47653 * 330.00454 * 8 7 6 31 31 H 1.09003 * 109.47206 * 210.00281 * 8 7 6 32 32 H 0.97002 * 119.99969 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0634 0.0000 4 6 3.7611 0.8691 -0.0037 5 6 4.0962 -0.5669 0.4670 6 6 5.2994 -1.1317 -0.2907 7 7 5.5828 -2.4883 0.1842 8 6 4.9462 -3.6385 -0.4623 9 6 6.4289 -2.6782 1.2159 10 8 6.9579 -1.7227 1.7527 11 6 6.7115 -4.0336 1.6907 12 1 6.1845 -4.8753 1.2663 13 6 7.6652 -4.2389 2.6956 14 7 8.2134 -3.2154 3.2950 15 14 8.1536 -5.9760 3.1788 16 1 9.3737 -6.3733 2.4313 17 1 8.4287 -6.0252 4.6373 18 1 7.0467 -6.9104 2.8521 19 16 2.5490 -1.4377 0.0006 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8899 0.5138 23 1 1.8504 2.0553 0.0030 24 1 4.2235 1.5897 0.6708 25 1 4.1445 1.0193 -1.0129 26 1 4.2600 -0.6011 1.5441 27 1 6.1686 -0.4973 -0.1168 28 1 5.0770 -1.1588 -1.3574 29 1 5.5753 -3.9897 -1.2803 30 1 3.9728 -3.3427 -0.8538 31 1 4.8168 -4.4391 0.2660 32 1 8.8742 -3.3577 3.9908 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725629742.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:10 Heat of formation + Delta-G solvation = -43.994550 kcal Electronic energy + Delta-G solvation = -15184.776899 eV Core-core repulsion = 12656.849008 eV Total energy + Delta-G solvation = -2527.927891 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.84144 -37.87261 -36.00466 -34.61318 -33.29137 -29.98579 -28.14571 -27.06031 -25.31172 -23.73021 -21.14756 -20.37408 -18.52934 -17.82475 -17.12235 -16.76138 -16.14584 -15.90436 -15.54486 -15.01783 -14.46617 -14.24274 -13.91413 -13.55537 -13.46709 -13.28624 -13.15870 -12.99049 -12.78457 -12.68539 -12.59499 -12.22733 -12.00762 -11.91881 -11.03880 -10.93643 -10.61430 -9.81543 -9.19237 -8.44401 -8.31201 -6.85073 0.63631 0.98254 1.39035 1.39744 1.43871 1.55695 2.23065 2.43170 2.78521 3.51475 3.69203 3.79778 3.92166 4.11642 4.41679 4.49936 4.54883 4.65321 4.71879 4.76811 4.80330 4.85254 4.94795 4.99973 5.01991 5.22623 5.36676 5.57613 5.71510 6.11457 6.35468 6.86850 7.36448 8.44182 8.65221 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.042316 B = 0.005979 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.527468 B = 4682.203217 C = 4915.471636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.121 4.121 3 C -0.178 4.178 4 C -0.091 4.091 5 C -0.052 4.052 6 C 0.148 3.852 7 N -0.648 5.648 8 C 0.101 3.899 9 C 0.540 3.460 10 O -0.628 6.628 11 C -0.570 4.570 12 H 0.090 0.910 13 C 0.030 3.970 14 N -0.820 5.820 15 Si 0.994 3.006 16 H -0.262 1.262 17 H -0.272 1.272 18 H -0.249 1.249 19 S -0.215 6.215 20 H 0.088 0.912 21 H 0.066 0.934 22 H 0.093 0.907 23 H 0.159 0.841 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.582 4.055 -8.199 15.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.233 4.233 3 C -0.205 4.205 4 C -0.130 4.130 5 C -0.182 4.182 6 C 0.023 3.977 7 N -0.384 5.384 8 C -0.042 4.042 9 C 0.346 3.654 10 O -0.515 6.515 11 C -0.607 4.607 12 H 0.108 0.892 13 C -0.185 4.185 14 N -0.449 5.449 15 Si 0.814 3.186 16 H -0.187 1.187 17 H -0.197 1.197 18 H -0.172 1.172 19 S 0.023 5.977 20 H 0.107 0.893 21 H 0.085 0.915 22 H 0.111 0.889 23 H 0.177 0.823 24 H 0.109 0.891 25 H 0.125 0.875 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.417 3.360 -8.032 15.165 hybrid contribution 0.753 0.662 0.805 1.286 sum -11.664 4.022 -7.228 14.299 Atomic orbital electron populations 1.20447 0.85941 1.03767 1.03764 1.24318 0.99975 0.94197 1.04780 1.23061 0.93642 1.00199 1.03641 1.21156 0.94624 0.93367 1.03844 1.24642 0.94378 0.97197 1.02024 1.21036 0.94410 0.84924 0.97341 1.47837 1.48604 1.05760 1.36164 1.21582 0.96669 0.88806 0.97141 1.18626 0.77627 0.90615 0.78545 1.90537 1.55860 1.44844 1.60234 1.21529 1.24525 0.92469 1.22132 0.89229 1.26966 0.94258 1.03241 0.94025 1.70188 1.21573 1.34279 1.18892 0.85057 0.79537 0.76218 0.77828 1.18668 1.19733 1.17215 1.86374 1.06722 1.17415 1.87197 0.89322 0.91460 0.88860 0.82324 0.89055 0.87521 0.92131 0.91506 0.88529 0.93259 0.90929 0.92110 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.40 71.24 0.74 -0.70 16 2 C -0.12 -3.06 6.56 25.33 0.17 -2.90 16 3 C -0.18 -4.16 10.12 25.00 0.25 -3.90 16 4 C -0.09 -2.45 5.99 30.12 0.18 -2.27 16 5 C -0.05 -1.89 3.73 31.20 0.12 -1.78 16 6 C 0.15 5.83 4.88 86.38 0.42 6.25 16 7 N -0.65 -30.31 2.83 -851.89 -2.41 -32.72 16 8 C 0.10 3.90 9.89 127.77 1.26 5.17 16 9 C 0.54 31.85 7.61 86.36 0.66 32.50 16 10 O -0.63 -42.14 14.62 -4.32 -0.06 -42.20 16 11 C -0.57 -32.87 8.76 24.83 0.22 -32.65 16 12 H 0.09 4.69 5.95 -2.91 -0.02 4.67 16 13 C 0.03 1.71 5.49 85.30 0.47 2.18 16 14 N -0.82 -50.63 11.85 21.83 0.26 -50.37 16 15 Si 0.99 41.53 29.56 68.60 2.03 43.56 16 16 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 17 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 18 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 19 S -0.22 -7.07 20.38 -56.49 -1.15 -8.23 16 20 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 21 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 24 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.11 2.49 7.85 -2.39 -0.02 2.47 16 26 H 0.06 2.72 8.14 -2.38 -0.02 2.70 16 27 H 0.07 2.90 7.42 -2.39 -0.02 2.88 16 28 H 0.10 3.14 8.07 -2.39 -0.02 3.12 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 2.46 6.08 -2.39 -0.01 2.45 16 31 H 0.06 2.46 6.04 -2.39 -0.01 2.44 16 32 H 0.27 15.31 8.29 -92.71 -0.77 14.55 16 Total: -1.00 -75.51 280.62 4.26 -71.26 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 1.11 Total: 16.80 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 4.49 Total: 1.91 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -2.15 Total: -83.09 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -0.06 Total: -42.20 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: -7.07 SS G_CDS: -1.15 Total: -8.23 kcal Total: -75.51 4.26 -71.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725629742.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.261 kcal (2) G-P(sol) polarization free energy of solvation -75.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds