Wall clock time and date at job start Mon Mar 30 2020 04:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.82517 * 2 1 4 4 H 1.08004 * 119.99825 * 239.43149 * 3 2 1 5 5 C 1.37871 * 119.99980 * 59.43124 * 3 2 1 6 6 N 1.31515 * 120.00425 * 0.02562 * 5 3 2 7 7 Si 1.86802 * 119.99777 * 179.97438 * 5 3 2 8 8 H 1.48501 * 109.46773 * 90.00236 * 7 5 3 9 9 H 1.48498 * 109.47280 * 209.99738 * 7 5 3 10 10 H 1.48501 * 109.47412 * 330.00465 * 7 5 3 11 11 C 1.54379 * 109.90222 * 239.06212 * 2 1 3 12 12 C 1.55418 * 102.30849 * 261.73135 * 11 2 1 13 13 C 1.54943 * 100.89585 * 325.98963 * 12 11 2 14 14 H 1.08995 * 110.31484 * 277.36630 * 13 12 11 15 15 C 1.50698 * 110.30987 * 155.28720 * 13 12 11 16 16 C 1.31736 * 121.60632 * 116.11296 * 15 13 12 17 17 S 1.77529 * 106.95065 * 180.02562 * 16 15 13 18 18 N 1.78455 * 96.59968 * 345.06530 * 17 16 15 19 19 C 1.48309 * 101.36067 * 24.22259 * 18 17 16 20 20 O 1.43243 * 109.82626 * 120.88766 * 2 1 3 21 21 H 1.09005 * 109.46762 * 300.56768 * 1 2 3 22 22 H 1.09000 * 109.46903 * 60.56583 * 1 2 3 23 23 H 1.08995 * 109.47072 * 180.57198 * 1 2 3 24 24 H 0.96996 * 120.00503 * 179.97438 * 6 5 3 25 25 H 1.08995 * 110.85387 * 19.99384 * 11 2 1 26 26 H 1.08998 * 110.84548 * 143.41288 * 11 2 1 27 27 H 1.09004 * 111.20821 * 208.06506 * 12 11 2 28 28 H 1.08993 * 111.08526 * 83.86975 * 12 11 2 29 29 H 1.07998 * 126.52375 * 0.04854 * 16 15 13 30 30 H 1.00907 * 110.99576 * 266.28152 * 18 17 16 31 31 H 1.09000 * 109.24503 * 212.39465 * 19 18 17 32 32 H 1.08996 * 109.24718 * 93.04857 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0412 1.4177 0.0000 4 1 2.6718 1.7643 -0.8054 5 6 1.7037 2.2721 1.0281 6 7 0.9362 1.8499 2.0090 7 14 2.3379 4.0292 1.0284 8 1 1.3721 4.9040 0.3162 9 1 2.4924 4.4995 2.4284 10 1 3.6530 4.0810 0.3407 11 6 2.0556 -0.7463 -1.2451 12 6 2.3737 -2.1571 -0.6760 13 6 2.8424 -1.7964 0.7561 14 1 3.8914 -1.5003 0.7476 15 6 2.6374 -2.9661 1.6838 16 6 3.6523 -3.5727 2.2648 17 16 2.9747 -4.8781 3.2590 18 7 1.2860 -4.3018 3.2311 19 6 1.2721 -3.4982 1.9847 20 8 2.0159 -0.6918 1.1564 21 1 -0.3633 0.5227 0.8849 22 1 -0.3633 0.5050 -0.8950 23 1 -0.3633 -1.0276 0.0103 24 1 0.6991 2.4509 2.7325 25 1 1.2877 -0.8026 -2.0165 26 1 2.9567 -0.2699 -1.6312 27 1 3.1717 -2.6393 -1.2406 28 1 1.4801 -2.7807 -0.6515 29 1 4.6975 -3.3231 2.1570 30 1 1.0874 -3.7253 4.0351 31 1 0.5796 -2.6648 2.1022 32 1 0.9405 -4.1249 1.1568 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725629893.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:41 Heat of formation + Delta-G solvation = -14.777626 kcal Electronic energy + Delta-G solvation = -15845.526399 eV Core-core repulsion = 13318.865449 eV Total energy + Delta-G solvation = -2526.660950 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -38.94904 -36.60407 -33.07844 -31.53572 -31.12119 -29.23118 -25.66483 -25.14522 -24.38789 -21.52868 -19.49985 -18.58569 -17.51993 -16.53319 -16.10751 -15.13612 -14.91554 -14.47688 -13.81121 -13.32354 -12.91247 -12.83974 -12.23241 -12.17293 -11.89288 -11.27416 -11.07509 -10.99933 -10.85858 -10.64488 -10.50893 -10.32935 -10.17100 -10.02222 -9.61063 -9.47238 -9.17740 -8.54591 -8.01660 -7.25605 -6.01516 -4.18035 1.77974 2.01638 2.17974 3.25856 3.33571 3.35979 4.37209 4.49736 4.90640 5.11830 5.37199 5.38814 5.41152 5.58322 5.64728 5.81232 5.99949 6.14015 6.19737 6.23013 6.43503 6.53774 6.57319 6.69986 6.79170 6.83537 7.03695 7.31312 7.72470 8.01657 8.29130 8.52529 8.95926 9.53716 11.00243 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.033485 B = 0.007085 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.001545 B = 3950.857424 C = 4186.098291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.228 3.772 3 C -0.535 4.535 4 H 0.059 0.941 5 C 0.081 3.919 6 N -0.860 5.860 7 Si 0.888 3.112 8 H -0.280 1.280 9 H -0.286 1.286 10 H -0.274 1.274 11 C -0.141 4.141 12 C -0.146 4.146 13 C 0.129 3.871 14 H 0.065 0.935 15 C -0.127 4.127 16 C -0.173 4.173 17 S -0.019 6.019 18 N -0.573 5.573 19 C 0.055 3.945 20 O -0.345 6.345 21 H 0.089 0.911 22 H 0.037 0.963 23 H 0.011 0.989 24 H 0.259 0.741 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.166 0.834 30 H 0.353 0.647 31 H 0.108 0.892 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.023 -8.839 -1.191 9.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.190 3.810 3 C -0.573 4.573 4 H 0.077 0.923 5 C -0.124 4.124 6 N -0.497 5.497 7 Si 0.716 3.284 8 H -0.206 1.206 9 H -0.211 1.211 10 H -0.199 1.199 11 C -0.178 4.178 12 C -0.184 4.184 13 C 0.067 3.933 14 H 0.083 0.917 15 C -0.140 4.140 16 C -0.305 4.305 17 S 0.109 5.891 18 N -0.291 5.291 19 C -0.075 4.075 20 O -0.265 6.265 21 H 0.108 0.892 22 H 0.056 0.944 23 H 0.030 0.970 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.184 0.816 30 H 0.168 0.832 31 H 0.126 0.874 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.702 -10.361 -0.400 10.508 hybrid contribution 0.569 2.855 -0.484 2.951 sum 2.271 -7.506 -0.884 7.891 Atomic orbital electron populations 1.21981 0.97258 0.97576 1.02813 1.19690 0.91015 0.90410 0.79837 1.21279 1.32839 0.94754 1.08425 0.92293 1.24995 0.94111 0.98166 0.95115 1.69937 1.34495 1.35140 1.10110 0.86682 0.79438 0.85007 0.77316 1.20566 1.21144 1.19874 1.23254 1.01065 0.93678 0.99845 1.23240 1.00798 0.98455 0.95928 1.21397 0.96289 0.85391 0.90217 0.91740 1.22856 0.93778 0.98256 0.99108 1.25375 1.02203 0.99436 1.03476 1.86461 1.01111 1.33746 1.67791 1.67241 1.14176 1.39733 1.07928 1.21697 0.96507 0.97516 0.91753 1.88805 1.65430 1.39644 1.32579 0.89197 0.94407 0.96995 0.93051 0.91920 0.91566 0.91508 0.91434 0.81628 0.83151 0.87388 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.51 37.16 0.32 -2.91 16 2 C 0.23 5.42 0.82 -91.05 -0.07 5.34 16 3 C -0.54 -14.28 8.22 -34.44 -0.28 -14.56 16 4 H 0.06 1.55 7.52 -52.48 -0.39 1.16 16 5 C 0.08 2.21 5.26 -17.82 -0.09 2.11 16 6 N -0.86 -24.07 10.93 55.43 0.61 -23.47 16 7 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 8 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 9 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 11 C -0.14 -2.76 6.08 -24.72 -0.15 -2.91 16 12 C -0.15 -2.49 6.55 -24.42 -0.16 -2.65 16 13 C 0.13 2.48 3.71 -26.86 -0.10 2.38 16 14 H 0.06 1.24 8.02 -51.93 -0.42 0.83 16 15 C -0.13 -2.15 5.15 -101.77 -0.52 -2.68 16 16 C -0.17 -2.68 11.05 28.85 0.32 -2.36 16 17 S -0.02 -0.28 23.85 -107.50 -2.56 -2.85 16 18 N -0.57 -8.60 8.34 -11.00 -0.09 -8.70 16 19 C 0.06 0.88 6.40 -4.73 -0.03 0.85 16 20 O -0.34 -8.32 9.50 -35.23 -0.33 -8.66 16 21 H 0.09 2.34 6.04 -51.93 -0.31 2.03 16 22 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.06 1.14 7.82 -51.93 -0.41 0.73 16 26 H 0.07 1.30 7.65 -51.93 -0.40 0.90 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.09 7.45 -51.93 -0.39 0.70 16 29 H 0.17 2.25 8.06 -52.49 -0.42 1.82 16 30 H 0.35 4.98 9.00 -36.90 -0.33 4.64 16 31 H 0.11 1.89 7.85 -51.93 -0.41 1.48 16 32 H 0.11 1.59 7.92 -51.93 -0.41 1.17 16 LS Contribution 275.29 15.07 4.15 4.15 Total: -1.00 -28.23 275.29 -8.33 -36.56 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -4.29 Total: 4.54 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -0.78 Total: -17.38 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.51 Total: -32.17 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.33 Total: -8.66 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -2.56 Total: -2.85 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.23 -8.33 -36.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725629893.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.785 kcal (2) G-P(sol) polarization free energy of solvation -28.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds