Wall clock time and date at job start Mon Mar 30 2020 04:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.82517 * 2 1 4 4 H 1.08004 * 119.99825 * 239.43149 * 3 2 1 5 5 C 1.37871 * 119.99980 * 59.43124 * 3 2 1 6 6 N 1.31515 * 120.00425 * 0.02562 * 5 3 2 7 7 Si 1.86802 * 119.99777 * 179.97438 * 5 3 2 8 8 H 1.48501 * 109.46773 * 90.00236 * 7 5 3 9 9 H 1.48498 * 109.47280 * 209.99738 * 7 5 3 10 10 H 1.48501 * 109.47412 * 330.00465 * 7 5 3 11 11 C 1.54379 * 109.90222 * 239.06212 * 2 1 3 12 12 C 1.55418 * 102.30849 * 261.73135 * 11 2 1 13 13 C 1.54943 * 100.89585 * 325.98963 * 12 11 2 14 14 H 1.08995 * 110.31484 * 277.36630 * 13 12 11 15 15 C 1.50698 * 110.30987 * 155.28720 * 13 12 11 16 16 C 1.31736 * 121.60632 * 116.11296 * 15 13 12 17 17 S 1.77529 * 106.95065 * 180.02562 * 16 15 13 18 18 N 1.78455 * 96.59968 * 345.06530 * 17 16 15 19 19 C 1.48309 * 101.36067 * 24.22259 * 18 17 16 20 20 O 1.43243 * 109.82626 * 120.88766 * 2 1 3 21 21 H 1.09005 * 109.46762 * 300.56768 * 1 2 3 22 22 H 1.09000 * 109.46903 * 60.56583 * 1 2 3 23 23 H 1.08995 * 109.47072 * 180.57198 * 1 2 3 24 24 H 0.96996 * 120.00503 * 179.97438 * 6 5 3 25 25 H 1.08995 * 110.85387 * 19.99384 * 11 2 1 26 26 H 1.08998 * 110.84548 * 143.41288 * 11 2 1 27 27 H 1.09004 * 111.20821 * 208.06506 * 12 11 2 28 28 H 1.08993 * 111.08526 * 83.86975 * 12 11 2 29 29 H 1.07998 * 126.52375 * 0.04854 * 16 15 13 30 30 H 1.00907 * 110.99576 * 266.28152 * 18 17 16 31 31 H 1.09000 * 109.24503 * 212.39465 * 19 18 17 32 32 H 1.08996 * 109.24718 * 93.04857 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0412 1.4177 0.0000 4 1 2.6718 1.7643 -0.8054 5 6 1.7037 2.2721 1.0281 6 7 0.9362 1.8499 2.0090 7 14 2.3379 4.0292 1.0284 8 1 1.3721 4.9040 0.3162 9 1 2.4924 4.4995 2.4284 10 1 3.6530 4.0810 0.3407 11 6 2.0556 -0.7463 -1.2451 12 6 2.3737 -2.1571 -0.6760 13 6 2.8424 -1.7964 0.7561 14 1 3.8914 -1.5003 0.7476 15 6 2.6374 -2.9661 1.6838 16 6 3.6523 -3.5727 2.2648 17 16 2.9747 -4.8781 3.2590 18 7 1.2860 -4.3018 3.2311 19 6 1.2721 -3.4982 1.9847 20 8 2.0159 -0.6918 1.1564 21 1 -0.3633 0.5227 0.8849 22 1 -0.3633 0.5050 -0.8950 23 1 -0.3633 -1.0276 0.0103 24 1 0.6991 2.4509 2.7325 25 1 1.2877 -0.8026 -2.0165 26 1 2.9567 -0.2699 -1.6312 27 1 3.1717 -2.6393 -1.2406 28 1 1.4801 -2.7807 -0.6515 29 1 4.6975 -3.3231 2.1570 30 1 1.0874 -3.7253 4.0351 31 1 0.5796 -2.6648 2.1022 32 1 0.9405 -4.1249 1.1568 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725629893.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:41 Heat of formation + Delta-G solvation = -32.411577 kcal Electronic energy + Delta-G solvation = -15846.291064 eV Core-core repulsion = 13318.865449 eV Total energy + Delta-G solvation = -2527.425615 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.50352 -37.97984 -34.93051 -32.97374 -32.77952 -30.84193 -27.41025 -26.75102 -25.86122 -23.00750 -21.26858 -19.90287 -18.76772 -18.44298 -17.48557 -16.68772 -16.47881 -16.06605 -15.44989 -14.84198 -14.44932 -14.14428 -13.93493 -13.58114 -13.52889 -13.01147 -12.82011 -12.75338 -12.40418 -12.31386 -12.17343 -11.89236 -11.71978 -11.39881 -11.18166 -10.97624 -10.72734 -10.56142 -9.80611 -8.47062 -8.03015 -6.25842 0.55171 0.77232 0.94191 1.39641 1.41680 1.50085 2.42438 3.11862 3.24665 3.62521 3.88674 3.95084 4.04680 4.27091 4.31384 4.50181 4.61551 4.66319 4.73797 4.92442 4.96116 4.98552 5.12306 5.16249 5.29866 5.31681 5.41700 5.55474 5.70083 6.12268 6.34575 6.65509 7.10815 7.50165 8.96713 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.033485 B = 0.007085 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.001545 B = 3950.857424 C = 4186.098291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.214 3.786 3 C -0.554 4.554 4 H 0.054 0.946 5 C 0.034 3.966 6 N -0.888 5.888 7 Si 0.945 3.055 8 H -0.273 1.273 9 H -0.287 1.287 10 H -0.270 1.270 11 C -0.137 4.137 12 C -0.131 4.131 13 C 0.123 3.877 14 H 0.059 0.941 15 C -0.147 4.147 16 C -0.163 4.163 17 S 0.000 6.000 18 N -0.575 5.575 19 C 0.063 3.937 20 O -0.377 6.377 21 H 0.057 0.943 22 H 0.040 0.960 23 H 0.031 0.969 24 H 0.257 0.743 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.184 0.816 30 H 0.358 0.642 31 H 0.087 0.913 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.789 -9.951 -1.792 10.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.177 3.823 3 C -0.591 4.591 4 H 0.072 0.928 5 C -0.168 4.168 6 N -0.525 5.525 7 Si 0.771 3.229 8 H -0.199 1.199 9 H -0.213 1.213 10 H -0.195 1.195 11 C -0.175 4.175 12 C -0.169 4.169 13 C 0.061 3.939 14 H 0.077 0.923 15 C -0.160 4.160 16 C -0.295 4.295 17 S 0.128 5.872 18 N -0.293 5.293 19 C -0.068 4.068 20 O -0.297 6.297 21 H 0.076 0.924 22 H 0.059 0.941 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.097 0.903 29 H 0.202 0.798 30 H 0.173 0.827 31 H 0.106 0.894 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.472 -11.484 -1.007 11.790 hybrid contribution 0.373 3.135 -0.264 3.168 sum 2.844 -8.349 -1.271 8.911 Atomic orbital electron populations 1.21851 0.97433 0.98285 1.01317 1.19750 0.91070 0.89848 0.81664 1.21700 1.32493 0.96816 1.08121 0.92801 1.25687 0.94483 1.01608 0.95032 1.70084 1.35714 1.36094 1.10627 0.85791 0.79036 0.81056 0.77062 1.19862 1.21334 1.19508 1.23152 1.01121 0.94762 0.98462 1.23187 1.02201 0.97091 0.94432 1.21520 0.95294 0.84880 0.92178 0.92325 1.22709 0.94638 0.98419 1.00258 1.25686 1.02924 0.98861 1.02018 1.86444 1.00539 1.33022 1.67185 1.67229 1.14596 1.39618 1.07895 1.21589 0.95668 0.97066 0.92439 1.88725 1.66248 1.41479 1.33263 0.92428 0.94080 0.95039 0.93418 0.90471 0.91988 0.88610 0.90310 0.79846 0.82672 0.89448 0.86439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.11 8.51 71.98 0.61 -5.49 16 2 C 0.21 10.16 0.82 -11.07 -0.01 10.15 16 3 C -0.55 -29.71 8.22 25.60 0.21 -29.50 16 4 H 0.05 2.85 7.52 -2.91 -0.02 2.83 16 5 C 0.03 1.87 5.26 84.65 0.45 2.31 16 6 N -0.89 -50.73 10.93 21.45 0.23 -50.50 16 7 Si 0.94 43.09 29.54 68.60 2.03 45.12 16 8 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 9 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 C -0.14 -5.17 6.08 31.89 0.19 -4.98 16 12 C -0.13 -4.14 6.55 32.09 0.21 -3.93 16 13 C 0.12 4.56 3.71 30.51 0.11 4.67 16 14 H 0.06 2.20 8.02 -2.39 -0.02 2.18 16 15 C -0.15 -4.74 5.15 -17.51 -0.09 -4.83 16 16 C -0.16 -4.68 11.05 67.10 0.74 -3.93 16 17 S 0.00 -0.01 23.85 -56.49 -1.35 -1.36 16 18 N -0.57 -16.36 8.34 -188.72 -1.57 -17.93 16 19 C 0.06 1.92 6.40 84.94 0.54 2.46 16 20 O -0.38 -18.23 9.50 -148.98 -1.42 -19.64 16 21 H 0.06 3.06 6.04 -2.38 -0.01 3.04 16 22 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 25 H 0.08 2.64 7.82 -2.39 -0.02 2.62 16 26 H 0.06 2.35 7.65 -2.39 -0.02 2.34 16 27 H 0.10 2.47 8.14 -2.38 -0.02 2.46 16 28 H 0.08 2.31 7.45 -2.39 -0.02 2.29 16 29 H 0.18 4.48 8.06 -2.91 -0.02 4.46 16 30 H 0.36 9.68 9.00 -91.21 -0.82 8.86 16 31 H 0.09 3.04 7.85 -2.39 -0.02 3.02 16 32 H 0.12 3.27 7.92 -2.39 -0.02 3.25 16 Total: -1.00 -59.92 275.29 1.19 -58.72 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.30 Total: 18.67 kcal Atomic # 6 Polarization: -36.05 SS G_CDS: 2.97 Total: -33.08 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: -1.34 Total: -68.43 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -1.42 Total: -19.64 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -1.35 Total: -1.36 kcal Total: -59.92 1.19 -58.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725629893.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.309 kcal (2) G-P(sol) polarization free energy of solvation -59.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds