Wall clock time and date at job start Mon Mar 30 2020 04:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.86942 * 2 1 4 4 H 1.07993 * 120.00220 * 121.00272 * 3 2 1 5 5 C 1.37878 * 119.99620 * 301.00781 * 3 2 1 6 6 N 1.31516 * 120.00261 * 359.97438 * 5 3 2 7 7 Si 1.86801 * 119.99845 * 179.97438 * 5 3 2 8 8 H 1.48499 * 109.47373 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47219 * 119.99732 * 7 5 3 10 10 H 1.48497 * 109.47244 * 239.99996 * 7 5 3 11 11 C 1.54108 * 109.87878 * 121.00313 * 2 1 3 12 12 C 1.54809 * 104.18490 * 117.54917 * 11 2 1 13 13 C 1.54997 * 102.09373 * 339.11772 * 12 11 2 14 14 H 1.09002 * 110.61957 * 278.52436 * 13 12 11 15 15 C 1.50699 * 110.61586 * 155.68496 * 13 12 11 16 16 C 1.31736 * 121.60597 * 117.20514 * 15 13 12 17 17 S 1.77533 * 106.95127 * 180.21247 * 16 15 13 18 18 N 1.78457 * 96.59492 * 14.93427 * 17 16 15 19 19 C 1.48489 * 101.28814 * 335.56674 * 18 17 16 20 20 O 1.44122 * 109.97376 * 238.95722 * 2 1 3 21 21 H 1.08998 * 109.47088 * 298.99035 * 1 2 3 22 22 H 1.09001 * 109.47215 * 58.99974 * 1 2 3 23 23 H 1.09006 * 109.47046 * 178.99607 * 1 2 3 24 24 H 0.96997 * 120.00250 * 180.02562 * 6 5 3 25 25 H 1.08994 * 110.48812 * 358.86739 * 11 2 1 26 26 H 1.08998 * 110.59733 * 236.27647 * 11 2 1 27 27 H 1.08997 * 110.90554 * 220.92074 * 12 11 2 28 28 H 1.08997 * 110.90983 * 97.31794 * 12 11 2 29 29 H 1.08002 * 126.52616 * 0.22009 * 16 15 13 30 30 H 1.00904 * 110.99906 * 217.82994 * 18 17 16 31 31 H 1.08999 * 109.43844 * 267.24000 * 19 18 17 32 32 H 1.09002 * 109.15897 * 147.83289 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0422 1.4173 0.0000 4 1 2.6788 1.7615 0.8016 5 6 1.6979 2.2747 -1.0235 6 7 0.9230 1.8555 -1.9999 7 14 2.3322 4.0317 -1.0232 8 1 3.1779 4.2525 0.1774 9 1 3.1390 4.2670 -2.2475 10 1 1.1836 4.9726 -0.9988 11 6 2.0540 -0.7465 1.2422 12 6 2.8358 -1.9493 0.6603 13 6 2.2335 -2.0702 -0.7628 14 1 1.2879 -2.6117 -0.7346 15 6 3.2044 -2.7493 -1.6940 16 6 2.9223 -3.9029 -2.2642 17 16 4.3225 -4.3426 -3.2631 18 7 5.4635 -3.1753 -2.5419 19 6 4.5323 -2.1429 -2.0204 20 8 2.0223 -0.6985 -1.1605 21 1 -0.3633 0.4981 0.8989 22 1 -0.3634 0.5293 -0.8809 23 1 -0.3633 -1.0276 -0.0180 24 1 0.6812 2.4585 -2.7201 25 1 1.2237 -1.0928 1.8576 26 1 2.7171 -0.1056 1.8233 27 1 2.6478 -2.8527 1.2403 28 1 3.9032 -1.7337 0.6138 29 1 2.0123 -4.4726 -2.1465 30 1 6.0746 -2.7860 -3.2442 31 1 4.3969 -1.3642 -2.7709 32 1 4.9567 -1.7010 -1.1189 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725629896.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:56 Heat of formation + Delta-G solvation = -10.851721 kcal Electronic energy + Delta-G solvation = -15802.443729 eV Core-core repulsion = 13275.953019 eV Total energy + Delta-G solvation = -2526.490710 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.87843 -36.54657 -33.07644 -31.64693 -31.03288 -29.26020 -25.62043 -25.21073 -24.41763 -21.34778 -19.47110 -18.58169 -17.62116 -16.76449 -15.55638 -15.14027 -14.84304 -14.39373 -13.61277 -13.42041 -13.11525 -12.91687 -12.42464 -12.24926 -11.76789 -11.32516 -11.14203 -10.96221 -10.76393 -10.65201 -10.50665 -10.42373 -10.02534 -9.90609 -9.61695 -9.53004 -9.14971 -8.57794 -8.09983 -7.01761 -6.02639 -4.18781 1.77257 1.98623 2.21032 3.24702 3.33479 3.36451 4.36337 4.39402 4.94453 5.13268 5.40703 5.43635 5.51894 5.57941 5.65802 5.81954 5.99556 6.11785 6.25245 6.34271 6.51059 6.52374 6.58688 6.72977 6.80265 6.84316 7.09243 7.22270 7.71842 8.06390 8.27034 8.46856 8.93039 9.51850 10.99342 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.029516 B = 0.007463 C = 0.006744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.400562 B = 3750.997006 C = 4150.621409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.224 3.776 3 C -0.522 4.522 4 H 0.062 0.938 5 C 0.079 3.921 6 N -0.859 5.859 7 Si 0.889 3.111 8 H -0.272 1.272 9 H -0.283 1.283 10 H -0.283 1.283 11 C -0.141 4.141 12 C -0.142 4.142 13 C 0.117 3.883 14 H 0.063 0.937 15 C -0.098 4.098 16 C -0.151 4.151 17 S -0.036 6.036 18 N -0.584 5.584 19 C 0.054 3.946 20 O -0.336 6.336 21 H 0.036 0.964 22 H 0.091 0.909 23 H 0.010 0.990 24 H 0.260 0.740 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.169 0.831 30 H 0.361 0.639 31 H 0.081 0.919 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.773 -8.279 0.559 9.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.187 3.813 3 C -0.560 4.560 4 H 0.081 0.919 5 C -0.126 4.126 6 N -0.495 5.495 7 Si 0.716 3.284 8 H -0.197 1.197 9 H -0.209 1.209 10 H -0.209 1.209 11 C -0.179 4.179 12 C -0.180 4.180 13 C 0.055 3.945 14 H 0.080 0.920 15 C -0.109 4.109 16 C -0.282 4.282 17 S 0.092 5.908 18 N -0.305 5.305 19 C -0.076 4.076 20 O -0.256 6.256 21 H 0.055 0.945 22 H 0.110 0.890 23 H 0.029 0.971 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.186 0.814 30 H 0.177 0.823 31 H 0.099 0.901 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.341 -9.195 -0.021 10.168 hybrid contribution -0.331 2.168 0.228 2.205 sum 4.010 -7.027 0.208 8.093 Atomic orbital electron populations 1.22165 0.98058 0.97605 1.02880 1.19767 0.90683 0.90915 0.79941 1.21111 1.32387 0.93607 1.08878 0.91941 1.25039 0.94155 0.98292 0.95141 1.69960 1.34037 1.35100 1.10441 0.86606 0.78857 0.84832 0.78084 1.19680 1.20931 1.20885 1.23079 0.98898 0.95959 0.99929 1.23084 1.00521 0.98523 0.95857 1.21592 0.93516 0.88830 0.90557 0.91968 1.22011 0.96204 0.93967 0.98764 1.24989 1.01602 1.00092 1.01522 1.85942 1.05212 1.50269 1.49368 1.67514 1.14177 1.15820 1.33001 1.21672 0.89298 0.93811 1.02832 1.89421 1.85856 1.14570 1.35747 0.94505 0.89046 0.97104 0.93036 0.92732 0.91403 0.91977 0.91315 0.81369 0.82253 0.90149 0.87154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.39 37.16 0.31 -3.23 16 2 C 0.22 5.42 0.74 -91.19 -0.07 5.35 16 3 C -0.52 -13.94 8.26 -34.44 -0.28 -14.23 16 4 H 0.06 1.64 7.34 -52.49 -0.39 1.26 16 5 C 0.08 2.14 5.26 -17.82 -0.09 2.05 16 6 N -0.86 -24.12 10.92 55.43 0.61 -23.51 16 7 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 8 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 C -0.14 -2.83 6.26 -25.20 -0.16 -2.99 16 12 C -0.14 -2.53 6.55 -24.72 -0.16 -2.69 16 13 C 0.12 2.27 3.55 -26.83 -0.10 2.18 16 14 H 0.06 1.17 8.02 -51.93 -0.42 0.75 16 15 C -0.10 -1.72 5.19 -101.77 -0.53 -2.25 16 16 C -0.15 -2.38 11.06 28.85 0.32 -2.06 16 17 S -0.04 -0.54 23.85 -107.50 -2.56 -3.10 16 18 N -0.58 -8.57 8.35 -10.88 -0.09 -8.66 16 19 C 0.05 0.89 6.72 -4.63 -0.03 0.86 16 20 O -0.34 -8.26 10.00 -35.23 -0.35 -8.61 16 21 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.09 2.42 6.00 -51.93 -0.31 2.11 16 23 H 0.01 0.22 8.13 -51.93 -0.42 -0.21 16 24 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 25 H 0.05 1.00 7.70 -51.93 -0.40 0.60 16 26 H 0.07 1.36 7.41 -51.93 -0.38 0.98 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.21 6.77 -51.93 -0.35 0.86 16 29 H 0.17 2.25 8.06 -52.49 -0.42 1.83 16 30 H 0.36 4.42 9.00 -36.90 -0.33 4.09 16 31 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 32 H 0.11 1.85 6.85 -51.93 -0.36 1.49 16 LS Contribution 273.97 15.07 4.13 4.13 Total: -1.00 -28.69 273.97 -8.27 -36.96 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -4.19 Total: 4.09 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -0.79 Total: -17.01 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.51 Total: -32.17 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.35 Total: -8.61 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -0.54 SS G_CDS: -2.56 Total: -3.10 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.69 -8.27 -36.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725629896.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.106 kcal (2) G-P(sol) polarization free energy of solvation -28.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds