Wall clock time and date at job start Mon Mar 30 2020 04:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46236 * 2 1 4 4 C 1.49617 * 109.42544 * 240.03706 * 2 1 3 5 5 C 1.31316 * 118.46536 * 258.94588 * 4 2 1 6 6 S 1.77561 * 108.14220 * 359.80369 * 5 4 2 7 7 C 1.54790 * 109.46878 * 119.98823 * 2 1 3 8 8 C 1.53001 * 111.22782 * 211.86814 * 7 2 1 9 9 N 1.46500 * 109.47371 * 180.02562 * 8 7 2 10 10 C 1.46502 * 119.99610 * 270.00159 * 9 8 7 11 11 C 1.34774 * 120.00026 * 89.99626 * 9 8 7 12 12 O 1.21686 * 120.00013 * 0.02562 * 11 9 8 13 13 C 1.46371 * 119.99896 * 179.97438 * 11 9 8 14 14 H 1.08005 * 120.00351 * 0.02562 * 13 11 9 15 15 C 1.40052 * 120.00215 * 180.02562 * 13 11 9 16 16 N 1.30668 * 119.99432 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 120.00093 * 180.02562 * 15 13 11 18 18 H 1.48491 * 109.47014 * 90.00174 * 17 15 13 19 19 H 1.48497 * 109.46805 * 209.99993 * 17 15 13 20 20 H 1.48500 * 109.46903 * 329.99745 * 17 15 13 21 21 H 1.09001 * 109.46847 * 299.29820 * 1 2 3 22 22 H 1.09000 * 109.47654 * 59.29743 * 1 2 3 23 23 H 1.09007 * 109.47142 * 179.30088 * 1 2 3 24 24 H 1.08004 * 120.76737 * 78.92343 * 4 2 1 25 25 H 1.08004 * 125.93047 * 179.78014 * 5 4 2 26 26 H 1.08993 * 111.22683 * 336.24839 * 7 2 1 27 27 H 1.09001 * 109.46961 * 300.00301 * 8 7 2 28 28 H 1.09001 * 109.47032 * 60.00091 * 8 7 2 29 29 H 1.08999 * 109.47438 * 89.99819 * 10 9 8 30 30 H 1.09002 * 109.46799 * 209.99866 * 10 9 8 31 31 H 1.08992 * 109.47351 * 329.99602 * 10 9 8 32 32 H 0.97007 * 119.99652 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0276 -0.7047 -1.2224 5 6 2.4445 -1.9443 -1.1042 6 16 2.2774 -2.4238 0.5973 7 6 2.0459 -0.7294 1.2640 8 6 3.3725 -0.1365 1.7431 9 7 3.8249 -0.8538 2.9377 10 6 3.4195 -0.3912 4.2673 11 6 4.6140 -1.9394 2.8134 12 8 4.9509 -2.3234 1.7090 13 6 5.0664 -2.6557 4.0070 14 1 4.7677 -2.3146 4.9873 15 6 5.8868 -3.7834 3.8780 16 7 6.2487 -4.1958 2.6920 17 14 6.4637 -4.6980 5.4012 18 1 5.4822 -5.7585 5.7432 19 1 7.7877 -5.3159 5.1358 20 1 6.5799 -3.7466 6.5355 21 1 -0.3633 0.5029 0.8962 22 1 -0.3634 0.5247 -0.8836 23 1 -0.3634 -1.0277 -0.0125 24 1 2.0432 -0.2055 -2.1801 25 1 2.8229 -2.5646 -1.9032 26 1 1.3006 -0.7159 2.0593 27 1 4.1198 -0.2350 0.9558 28 1 3.2338 0.9177 1.9827 29 1 2.4861 -0.8767 4.5520 30 1 4.1950 -0.6417 4.9912 31 1 3.2760 0.6891 4.2480 32 1 6.8172 -4.9767 2.6027 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725629974.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:48 Heat of formation + Delta-G solvation = -9.289458 kcal Electronic energy + Delta-G solvation = -15610.055583 eV Core-core repulsion = 13083.632618 eV Total energy + Delta-G solvation = -2526.422965 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.03881 -36.78424 -33.76260 -32.30184 -30.72409 -29.18845 -26.08336 -25.33900 -23.20653 -22.22374 -19.06271 -18.89422 -16.91978 -16.32973 -15.48905 -14.81641 -14.50654 -14.05334 -13.80837 -13.42235 -12.82344 -12.69301 -12.52605 -12.05054 -11.54997 -11.44998 -11.24968 -11.14273 -11.11183 -10.87870 -10.79539 -10.52726 -10.17996 -10.02301 -9.92542 -9.06731 -8.74730 -7.47311 -7.28669 -6.39282 -6.05022 -4.52118 2.20988 2.53042 3.04901 3.18884 3.25643 3.28129 4.14957 4.50424 4.69453 5.00666 5.06410 5.17440 5.55239 5.67123 5.70296 5.74841 5.85462 5.95515 6.00015 6.04381 6.11263 6.27108 6.43049 6.49233 6.57336 6.63403 6.78478 7.53715 7.68670 8.23093 8.43561 9.13264 9.54619 10.70741 10.91725 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.038066 B = 0.007583 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.394823 B = 3691.700581 C = 4102.694176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.061 4.061 3 H 0.084 0.916 4 C -0.204 4.204 5 C -0.119 4.119 6 S -0.117 6.117 7 C -0.072 4.072 8 C 0.141 3.859 9 N -0.649 5.649 10 C 0.102 3.898 11 C 0.555 3.445 12 O -0.546 6.546 13 C -0.545 4.545 14 H 0.068 0.932 15 C 0.089 3.911 16 N -0.765 5.765 17 Si 0.901 3.099 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.266 1.266 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.121 0.879 25 H 0.153 0.847 26 H 0.105 0.895 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.963 7.782 -2.579 12.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.081 4.081 3 H 0.102 0.898 4 C -0.236 4.236 5 C -0.250 4.250 6 S 0.125 5.875 7 C -0.203 4.203 8 C 0.015 3.985 9 N -0.388 5.388 10 C -0.042 4.042 11 C 0.360 3.640 12 O -0.425 6.425 13 C -0.582 4.582 14 H 0.086 0.914 15 C -0.130 4.130 16 N -0.394 5.394 17 Si 0.726 3.274 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.190 1.190 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.139 0.861 25 H 0.171 0.829 26 H 0.123 0.877 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.600 6.215 -2.656 10.938 hybrid contribution 0.225 0.731 0.150 0.779 sum -8.375 6.945 -2.506 11.165 Atomic orbital electron populations 1.21725 0.93801 1.02467 1.01423 1.20691 0.96455 1.00120 0.90857 0.89763 1.22689 1.05141 0.96515 0.99210 1.25168 1.00885 0.98951 1.00035 1.86935 1.88637 1.11794 1.00091 1.24969 1.02070 0.94505 0.98748 1.21090 0.92873 0.93566 0.90990 1.48086 1.54989 1.32434 1.03244 1.21388 0.99490 0.96573 0.86789 1.18171 0.77302 0.77989 0.90582 1.90644 1.58130 1.66084 1.27689 1.20981 1.32554 1.12295 0.92392 0.91415 1.25670 0.94625 0.96584 0.96127 1.70028 1.26447 1.20154 1.22803 0.86480 0.78323 0.79991 0.82591 1.19872 1.20579 1.19048 0.92455 0.92527 0.92042 0.86080 0.82901 0.87665 0.90367 0.92245 0.95430 0.90940 0.94276 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.02 37.16 0.33 -1.27 16 2 C -0.06 -0.86 2.78 -91.35 -0.25 -1.11 16 3 H 0.08 1.06 7.91 -51.93 -0.41 0.65 16 4 C -0.20 -3.06 9.48 -36.63 -0.35 -3.41 16 5 C -0.12 -2.09 11.31 28.93 0.33 -1.76 16 6 S -0.12 -2.49 20.13 -107.50 -2.16 -4.65 16 7 C -0.07 -1.27 3.22 -25.79 -0.08 -1.35 16 8 C 0.14 2.74 5.04 -4.04 -0.02 2.72 16 9 N -0.65 -14.71 2.85 -183.25 -0.52 -15.24 16 10 C 0.10 1.89 10.19 59.85 0.61 2.50 16 11 C 0.56 15.62 7.02 -12.99 -0.09 15.53 16 12 O -0.55 -17.05 12.75 5.20 0.07 -16.98 16 13 C -0.55 -15.44 8.74 -35.63 -0.31 -15.75 16 14 H 0.07 1.77 6.00 -52.48 -0.31 1.45 16 15 C 0.09 2.51 5.50 -17.37 -0.10 2.42 16 16 N -0.77 -23.05 11.83 55.55 0.66 -22.39 16 17 Si 0.90 20.45 29.56 -169.99 -5.02 15.42 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 24 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 25 H 0.15 2.44 8.06 -52.48 -0.42 2.02 16 26 H 0.11 1.76 7.87 -51.93 -0.41 1.35 16 27 H 0.08 1.74 7.42 -51.93 -0.39 1.35 16 28 H 0.06 0.95 7.89 -51.93 -0.41 0.54 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 1.40 6.09 -51.93 -0.32 1.09 16 31 H 0.04 0.59 7.89 -51.93 -0.41 0.18 16 32 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 LS Contribution 278.79 15.07 4.20 4.20 Total: -1.00 -33.58 278.79 -7.04 -40.62 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.33 Total: 0.49 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 0.07 Total: -1.48 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.13 Total: -37.63 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.07 Total: -16.98 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: -2.49 SS G_CDS: -2.16 Total: -4.65 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -33.58 -7.04 -40.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725629974.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.331 kcal (2) G-P(sol) polarization free energy of solvation -33.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds