Wall clock time and date at job start Mon Mar 30 2020 04:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46236 * 2 1 4 4 C 1.49617 * 109.42544 * 240.03706 * 2 1 3 5 5 C 1.31316 * 118.46536 * 258.94588 * 4 2 1 6 6 S 1.77561 * 108.14220 * 359.80369 * 5 4 2 7 7 C 1.54790 * 109.46878 * 119.98823 * 2 1 3 8 8 C 1.53001 * 111.22782 * 211.86814 * 7 2 1 9 9 N 1.46500 * 109.47371 * 180.02562 * 8 7 2 10 10 C 1.46502 * 119.99610 * 270.00159 * 9 8 7 11 11 C 1.34774 * 120.00026 * 89.99626 * 9 8 7 12 12 O 1.21686 * 120.00013 * 0.02562 * 11 9 8 13 13 C 1.46371 * 119.99896 * 179.97438 * 11 9 8 14 14 H 1.08005 * 120.00351 * 0.02562 * 13 11 9 15 15 C 1.40052 * 120.00215 * 180.02562 * 13 11 9 16 16 N 1.30668 * 119.99432 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 120.00093 * 180.02562 * 15 13 11 18 18 H 1.48491 * 109.47014 * 90.00174 * 17 15 13 19 19 H 1.48497 * 109.46805 * 209.99993 * 17 15 13 20 20 H 1.48500 * 109.46903 * 329.99745 * 17 15 13 21 21 H 1.09001 * 109.46847 * 299.29820 * 1 2 3 22 22 H 1.09000 * 109.47654 * 59.29743 * 1 2 3 23 23 H 1.09007 * 109.47142 * 179.30088 * 1 2 3 24 24 H 1.08004 * 120.76737 * 78.92343 * 4 2 1 25 25 H 1.08004 * 125.93047 * 179.78014 * 5 4 2 26 26 H 1.08993 * 111.22683 * 336.24839 * 7 2 1 27 27 H 1.09001 * 109.46961 * 300.00301 * 8 7 2 28 28 H 1.09001 * 109.47032 * 60.00091 * 8 7 2 29 29 H 1.08999 * 109.47438 * 89.99819 * 10 9 8 30 30 H 1.09002 * 109.46799 * 209.99866 * 10 9 8 31 31 H 1.08992 * 109.47351 * 329.99602 * 10 9 8 32 32 H 0.97007 * 119.99652 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0276 -0.7047 -1.2224 5 6 2.4445 -1.9443 -1.1042 6 16 2.2774 -2.4238 0.5973 7 6 2.0459 -0.7294 1.2640 8 6 3.3725 -0.1365 1.7431 9 7 3.8249 -0.8538 2.9377 10 6 3.4195 -0.3912 4.2673 11 6 4.6140 -1.9394 2.8134 12 8 4.9509 -2.3234 1.7090 13 6 5.0664 -2.6557 4.0070 14 1 4.7677 -2.3146 4.9873 15 6 5.8868 -3.7834 3.8780 16 7 6.2487 -4.1958 2.6920 17 14 6.4637 -4.6980 5.4012 18 1 5.4822 -5.7585 5.7432 19 1 7.7877 -5.3159 5.1358 20 1 6.5799 -3.7466 6.5355 21 1 -0.3633 0.5029 0.8962 22 1 -0.3634 0.5247 -0.8836 23 1 -0.3634 -1.0277 -0.0125 24 1 2.0432 -0.2055 -2.1801 25 1 2.8229 -2.5646 -1.9032 26 1 1.3006 -0.7159 2.0593 27 1 4.1198 -0.2350 0.9558 28 1 3.2338 0.9177 1.9827 29 1 2.4861 -0.8767 4.5520 30 1 4.1950 -0.6417 4.9912 31 1 3.2760 0.6891 4.2480 32 1 6.8172 -4.9767 2.6027 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725629974.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:47 Heat of formation + Delta-G solvation = -31.490533 kcal Electronic energy + Delta-G solvation = -15611.018294 eV Core-core repulsion = 13083.632618 eV Total energy + Delta-G solvation = -2527.385676 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.73625 -38.28173 -35.63250 -34.44146 -32.08523 -30.52389 -28.09640 -26.89179 -24.65575 -23.61348 -20.97808 -20.14983 -18.43631 -18.15358 -17.52499 -16.28257 -16.18357 -15.81302 -15.35197 -14.61656 -14.33849 -14.16792 -13.95412 -13.47281 -13.32819 -13.04451 -12.97301 -12.74014 -12.59883 -12.34212 -12.15781 -12.06045 -11.92626 -11.88060 -11.27422 -10.85212 -10.46573 -9.55569 -9.10004 -8.20449 -7.96044 -6.71380 0.86173 1.19791 1.39413 1.41223 1.54641 1.67666 2.27129 2.60543 2.92568 3.66559 3.76381 3.87723 3.98922 4.30587 4.40839 4.48562 4.59203 4.63336 4.70133 4.91344 4.98217 5.00010 5.04546 5.08731 5.27252 5.37377 5.43967 5.54262 5.87146 6.23136 6.52223 6.98779 7.56728 8.63633 8.84666 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.038066 B = 0.007583 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.394823 B = 3691.700581 C = 4102.694176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.060 4.060 3 H 0.115 0.885 4 C -0.169 4.169 5 C -0.144 4.144 6 S -0.243 6.243 7 C -0.048 4.048 8 C 0.140 3.860 9 N -0.654 5.654 10 C 0.100 3.900 11 C 0.543 3.457 12 O -0.589 6.589 13 C -0.575 4.575 14 H 0.084 0.916 15 C 0.031 3.969 16 N -0.819 5.819 17 Si 0.986 3.014 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.249 1.249 21 H 0.075 0.925 22 H 0.080 0.920 23 H 0.042 0.958 24 H 0.159 0.841 25 H 0.158 0.842 26 H 0.115 0.885 27 H 0.042 0.958 28 H 0.106 0.894 29 H 0.036 0.964 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.209 10.273 -1.688 14.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.081 4.081 3 H 0.133 0.867 4 C -0.200 4.200 5 C -0.275 4.275 6 S -0.003 6.003 7 C -0.177 4.177 8 C 0.014 3.986 9 N -0.391 5.391 10 C -0.043 4.043 11 C 0.346 3.654 12 O -0.472 6.472 13 C -0.612 4.612 14 H 0.102 0.898 15 C -0.183 4.183 16 N -0.449 5.449 17 Si 0.806 3.194 18 H -0.192 1.192 19 H -0.200 1.200 20 H -0.172 1.172 21 H 0.094 0.906 22 H 0.099 0.901 23 H 0.062 0.938 24 H 0.176 0.824 25 H 0.175 0.825 26 H 0.133 0.867 27 H 0.061 0.939 28 H 0.124 0.876 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.887 8.767 -1.760 13.331 hybrid contribution 0.554 0.107 -0.192 0.596 sum -9.333 8.873 -1.952 13.025 Atomic orbital electron populations 1.21690 0.91399 1.02023 1.03596 1.20841 0.98256 1.00628 0.88336 0.86731 1.23203 1.00649 0.95052 1.01062 1.25109 1.04683 1.00507 0.97237 1.87245 1.90118 1.17587 1.05312 1.24961 1.01158 0.91104 1.00524 1.21257 0.92731 0.95692 0.88912 1.47909 1.53998 1.31328 1.05869 1.21550 0.99198 0.99273 0.84317 1.18406 0.77759 0.79201 0.89997 1.90606 1.59882 1.67708 1.28976 1.21519 1.33140 1.13108 0.93390 0.89824 1.26831 0.94290 0.97381 0.99812 1.70211 1.27700 1.21087 1.25937 0.85200 0.77737 0.78485 0.77983 1.19225 1.20007 1.17191 0.90619 0.90064 0.93834 0.82363 0.82488 0.86679 0.93905 0.87574 0.94585 0.92191 0.89887 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.02 71.98 0.65 -1.89 16 2 C -0.06 -1.50 2.78 -11.27 -0.03 -1.53 16 3 H 0.11 2.26 7.91 -2.39 -0.02 2.24 16 4 C -0.17 -4.68 9.48 25.00 0.24 -4.44 16 5 C -0.14 -5.16 11.31 67.47 0.76 -4.39 16 6 S -0.24 -10.77 20.13 -56.49 -1.14 -11.91 16 7 C -0.05 -1.60 3.22 31.21 0.10 -1.50 16 8 C 0.14 5.21 5.04 86.38 0.44 5.65 16 9 N -0.65 -29.36 2.85 -851.90 -2.43 -31.79 16 10 C 0.10 3.48 10.19 127.77 1.30 4.79 16 11 C 0.54 31.43 7.02 86.36 0.61 32.04 16 12 O -0.59 -38.63 12.75 -4.30 -0.05 -38.68 16 13 C -0.57 -33.18 8.74 24.83 0.22 -32.97 16 14 H 0.08 4.37 6.00 -2.91 -0.02 4.36 16 15 C 0.03 1.80 5.50 85.31 0.47 2.27 16 16 N -0.82 -51.46 11.83 21.84 0.26 -51.20 16 17 Si 0.99 42.56 29.56 68.60 2.03 44.59 16 18 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 19 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 21 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 24 H 0.16 3.27 8.06 -2.91 -0.02 3.24 16 25 H 0.16 5.25 8.06 -2.91 -0.02 5.22 16 26 H 0.12 3.62 7.87 -2.39 -0.02 3.60 16 27 H 0.04 1.91 7.42 -2.39 -0.02 1.89 16 28 H 0.11 2.94 7.89 -2.39 -0.02 2.92 16 29 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 2.23 6.09 -2.39 -0.01 2.22 16 31 H 0.08 2.16 7.89 -2.39 -0.02 2.14 16 32 H 0.27 15.47 8.29 -92.70 -0.77 14.70 16 Total: -1.00 -78.82 278.79 4.51 -74.31 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 1.10 Total: 16.66 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 4.75 Total: -1.97 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -2.17 Total: -82.99 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -0.05 Total: -38.68 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: -10.77 SS G_CDS: -1.14 Total: -11.91 kcal Total: -78.82 4.51 -74.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725629974.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.815 kcal (2) G-P(sol) polarization free energy of solvation -78.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds