Wall clock time and date at job start Mon Mar 30 2020 04:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46505 * 109.46985 * 2 1 4 4 C 1.37091 * 120.00066 * 263.98271 * 3 2 1 5 5 H 1.07998 * 120.00094 * 191.50673 * 4 3 2 6 6 C 1.38954 * 120.00210 * 11.51462 * 4 3 2 7 7 N 1.31408 * 119.99885 * 14.47673 * 6 4 3 8 8 Si 1.86803 * 119.99973 * 194.47863 * 6 4 3 9 9 H 1.48496 * 109.47044 * 59.99918 * 8 6 4 10 10 H 1.48499 * 109.46771 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47186 * 299.99601 * 8 6 4 12 12 C 1.34780 * 119.99541 * 83.98547 * 3 2 1 13 13 O 1.21285 * 120.00326 * 4.82739 * 12 3 2 14 14 C 1.50702 * 119.99543 * 184.83092 * 12 3 2 15 15 H 1.08993 * 109.08550 * 35.34361 * 14 12 3 16 16 C 1.50869 * 109.09997 * 276.24505 * 14 12 3 17 17 H 1.07998 * 127.54449 * 59.62751 * 16 14 12 18 18 S 1.76982 * 104.90963 * 239.59837 * 16 14 12 19 19 C 1.76456 * 96.89825 * 0.02562 * 18 16 14 20 20 C 1.30687 * 109.76937 * 359.93583 * 19 18 16 21 21 C 1.50695 * 121.37887 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.46506 * 302.46272 * 1 2 3 23 23 H 1.09000 * 109.47405 * 62.46183 * 1 2 3 24 24 H 1.09003 * 109.47151 * 182.46853 * 1 2 3 25 25 H 1.09004 * 109.46773 * 240.00654 * 2 1 3 26 26 H 1.08993 * 109.47486 * 120.00189 * 2 1 3 27 27 H 0.96994 * 120.00083 * 180.02562 * 7 6 4 28 28 H 1.07999 * 125.09120 * 180.02562 * 19 18 16 29 29 H 1.09004 * 109.46791 * 270.04978 * 21 20 19 30 30 H 1.09000 * 109.46957 * 30.04759 * 21 20 19 31 31 H 1.08992 * 109.47426 * 150.05281 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3642 1.9861 -1.1807 5 1 2.8946 2.9268 -1.1705 6 6 2.0321 1.3889 -2.3906 7 7 1.1543 0.4115 -2.4218 8 14 2.8336 1.9754 -3.9728 9 1 4.3049 1.7987 -3.8773 10 1 2.3133 1.1817 -5.1149 11 1 2.5201 3.4114 -4.1836 12 6 2.1276 2.0573 1.1609 13 8 1.9059 1.4959 2.2128 14 6 2.5253 3.5109 1.1516 15 1 2.0950 3.9925 0.2737 16 6 4.0291 3.6109 1.0825 17 1 4.6794 3.2272 0.3103 18 16 4.4943 4.4952 2.5432 19 6 2.8658 4.7134 3.1866 20 6 1.9948 4.1686 2.3789 21 6 0.5182 4.2038 2.6779 22 1 -0.3632 0.5516 0.8671 23 1 -0.3634 0.4751 -0.9112 24 1 -0.3633 -1.0267 0.0443 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 0.9228 -0.0057 -3.2663 28 1 2.6254 5.2221 4.1085 29 1 0.2446 3.3245 3.2612 30 1 0.2839 5.1040 3.2461 31 1 -0.0419 4.2082 1.7429 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725629985.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:04 Heat of formation + Delta-G solvation = 21.446498 kcal Electronic energy + Delta-G solvation = -15639.965282 eV Core-core repulsion = 13128.530868 eV Total energy + Delta-G solvation = -2511.434415 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.080 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -36.75094 -33.88524 -32.60986 -29.72650 -28.56531 -26.48382 -24.80466 -23.07051 -20.65632 -19.07239 -17.36691 -16.12664 -14.67519 -14.02790 -13.43727 -12.90871 -12.39160 -11.82883 -11.47905 -11.28237 -10.76878 -10.52338 -10.24664 -10.11696 -9.85271 -9.64617 -9.36326 -9.13681 -8.89136 -8.59005 -8.52185 -8.22168 -8.09681 -7.68963 -7.30395 -6.79387 -6.13104 -5.97612 -4.98304 -4.69666 -2.18231 -1.81060 4.29632 4.36994 4.46333 4.79719 5.28621 5.56038 5.99896 6.77012 6.93945 6.98416 7.44013 7.64296 7.76560 7.84667 7.95937 8.07903 8.18498 8.32498 8.41341 8.80473 8.92263 9.00117 9.16198 9.22461 9.28725 9.51424 9.61482 10.18413 10.26805 10.64129 10.85128 11.52316 11.99710 12.30476 Molecular weight = 240.08amu Principal moments of inertia in cm(-1) A = 0.025487 B = 0.009407 C = 0.007706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.317821 B = 2975.839402 C = 3632.857407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.134 3.866 3 N -0.477 5.477 4 C -0.250 4.250 5 H 0.106 0.894 6 C -0.005 4.005 7 N -0.904 5.904 8 Si 0.913 3.087 9 H -0.282 1.282 10 H -0.296 1.296 11 H -0.280 1.280 12 C 0.488 3.512 13 O -0.628 6.628 14 C 0.095 3.905 15 H 0.008 0.992 16 C -0.765 4.765 17 H 0.099 0.901 18 S -0.166 6.166 19 C -0.181 4.181 20 C -0.129 4.129 21 C -0.082 4.082 22 H 0.017 0.983 23 H 0.082 0.918 24 H 0.018 0.982 25 H 0.097 0.903 26 H 0.017 0.983 27 H 0.247 0.753 28 H 0.114 0.886 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.709 1.537 -0.350 4.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.010 3.990 3 N -0.197 5.197 4 C -0.379 4.379 5 H 0.124 0.876 6 C -0.199 4.199 7 N -0.551 5.551 8 Si 0.743 3.257 9 H -0.209 1.209 10 H -0.222 1.222 11 H -0.206 1.206 12 C 0.281 3.719 13 O -0.515 6.515 14 C 0.073 3.927 15 H 0.025 0.975 16 C -0.894 4.894 17 H 0.117 0.883 18 S 0.082 5.918 19 C -0.313 4.313 20 C -0.147 4.147 21 C -0.142 4.142 22 H 0.036 0.964 23 H 0.101 0.899 24 H 0.037 0.963 25 H 0.115 0.885 26 H 0.036 0.964 27 H 0.058 0.942 28 H 0.132 0.868 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.573 1.520 0.415 3.017 hybrid contribution -0.943 -0.434 -1.431 1.768 sum -3.516 1.086 -1.016 3.817 Atomic orbital electron populations 1.22011 0.98447 0.97559 1.01087 1.21088 0.93227 0.85559 0.99151 1.43834 1.59111 1.10849 1.05896 1.20147 1.29072 1.05836 0.82865 0.87626 1.25059 0.98067 0.98533 0.98275 1.70143 1.33099 1.27711 1.24163 0.86146 0.79632 0.77987 0.81926 1.20879 1.22211 1.20585 1.22275 0.75747 0.91720 0.82201 1.90277 1.56976 1.72072 1.32181 1.17429 0.96091 0.88149 0.91056 0.97463 1.23999 0.90542 1.63904 1.10916 0.88286 1.81604 1.09470 1.69807 1.30917 1.23993 0.97795 1.08417 1.01101 1.21090 0.93929 1.01205 0.98429 1.20393 0.94459 0.99241 1.00074 0.96388 0.89917 0.96266 0.88484 0.96432 0.94204 0.86834 0.92603 0.94462 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.23 9.70 37.16 0.36 -4.87 16 2 C 0.13 5.71 5.28 -4.04 -0.02 5.69 16 3 N -0.48 -21.91 2.64 -114.81 -0.30 -22.21 16 4 C -0.25 -11.30 8.94 -14.93 -0.13 -11.43 16 5 H 0.11 4.98 5.74 -52.49 -0.30 4.68 16 6 C 0.00 -0.19 5.13 -17.47 -0.09 -0.28 16 7 N -0.90 -37.01 8.11 55.50 0.45 -36.56 16 8 Si 0.91 33.11 29.58 -169.99 -5.03 28.08 16 9 H -0.28 -10.30 7.11 56.52 0.40 -9.89 16 10 H -0.30 -10.20 7.11 56.52 0.40 -9.79 16 11 H -0.28 -10.06 7.11 56.52 0.40 -9.65 16 12 C 0.49 23.17 6.39 -10.98 -0.07 23.10 16 13 O -0.63 -30.49 15.60 5.55 0.09 -30.41 16 14 C 0.10 4.45 2.11 -94.80 -0.20 4.25 16 15 H 0.01 0.38 6.87 -51.93 -0.36 0.03 16 16 C -0.76 -36.91 10.71 36.09 0.39 -36.53 16 17 H 0.10 5.00 7.99 -52.49 -0.42 4.58 16 18 S -0.17 -7.16 22.98 -107.50 -2.47 -9.63 16 19 C -0.18 -7.40 10.79 29.10 0.31 -7.08 16 20 C -0.13 -5.51 4.81 -101.79 -0.49 -6.00 16 21 C -0.08 -3.05 9.61 36.00 0.35 -2.71 16 22 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.08 3.35 6.33 -51.93 -0.33 3.02 16 24 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.10 4.16 5.70 -51.93 -0.30 3.86 16 26 H 0.02 0.75 7.54 -51.93 -0.39 0.36 16 27 H 0.25 9.60 8.31 -40.82 -0.34 9.26 16 28 H 0.11 4.12 8.06 -52.49 -0.42 3.70 16 29 H 0.06 2.09 8.02 -51.93 -0.42 1.67 16 30 H 0.04 1.20 8.09 -51.93 -0.42 0.78 16 31 H 0.05 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 270.79 15.07 4.08 4.08 Total: -2.00 -91.57 270.79 -6.54 -98.11 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -3.76 Total: 4.41 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: 0.40 Total: -35.87 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.15 Total: -58.77 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: 0.09 Total: -30.41 kcal Atomic # 14 Polarization: 33.11 SS G_CDS: -5.03 Total: 28.08 kcal Atomic # 16 Polarization: -7.16 SS G_CDS: -2.47 Total: -9.63 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -91.57 -6.54 -98.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725629985.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.554 kcal (2) G-P(sol) polarization free energy of solvation -91.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds