Wall clock time and date at job start Mon Mar 30 2020 04:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46505 * 109.46985 * 2 1 4 4 C 1.37091 * 120.00066 * 263.98271 * 3 2 1 5 5 H 1.07998 * 120.00094 * 191.50673 * 4 3 2 6 6 C 1.38954 * 120.00210 * 11.51462 * 4 3 2 7 7 N 1.31408 * 119.99885 * 14.47673 * 6 4 3 8 8 Si 1.86803 * 119.99973 * 194.47863 * 6 4 3 9 9 H 1.48496 * 109.47044 * 59.99918 * 8 6 4 10 10 H 1.48499 * 109.46771 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47186 * 299.99601 * 8 6 4 12 12 C 1.34780 * 119.99541 * 83.98547 * 3 2 1 13 13 O 1.21285 * 120.00326 * 4.82739 * 12 3 2 14 14 C 1.50702 * 119.99543 * 184.83092 * 12 3 2 15 15 H 1.08993 * 109.08550 * 35.34361 * 14 12 3 16 16 C 1.50869 * 109.09997 * 276.24505 * 14 12 3 17 17 H 1.07998 * 127.54449 * 59.62751 * 16 14 12 18 18 S 1.76982 * 104.90963 * 239.59837 * 16 14 12 19 19 C 1.76456 * 96.89825 * 0.02562 * 18 16 14 20 20 C 1.30687 * 109.76937 * 359.93583 * 19 18 16 21 21 C 1.50695 * 121.37887 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.46506 * 302.46272 * 1 2 3 23 23 H 1.09000 * 109.47405 * 62.46183 * 1 2 3 24 24 H 1.09003 * 109.47151 * 182.46853 * 1 2 3 25 25 H 1.09004 * 109.46773 * 240.00654 * 2 1 3 26 26 H 1.08993 * 109.47486 * 120.00189 * 2 1 3 27 27 H 0.96994 * 120.00083 * 180.02562 * 7 6 4 28 28 H 1.07999 * 125.09120 * 180.02562 * 19 18 16 29 29 H 1.09004 * 109.46791 * 270.04978 * 21 20 19 30 30 H 1.09000 * 109.46957 * 30.04759 * 21 20 19 31 31 H 1.08992 * 109.47426 * 150.05281 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3642 1.9861 -1.1807 5 1 2.8946 2.9268 -1.1705 6 6 2.0321 1.3889 -2.3906 7 7 1.1543 0.4115 -2.4218 8 14 2.8336 1.9754 -3.9728 9 1 4.3049 1.7987 -3.8773 10 1 2.3133 1.1817 -5.1149 11 1 2.5201 3.4114 -4.1836 12 6 2.1276 2.0573 1.1609 13 8 1.9059 1.4959 2.2128 14 6 2.5253 3.5109 1.1516 15 1 2.0950 3.9925 0.2737 16 6 4.0291 3.6109 1.0825 17 1 4.6794 3.2272 0.3103 18 16 4.4943 4.4952 2.5432 19 6 2.8658 4.7134 3.1866 20 6 1.9948 4.1686 2.3789 21 6 0.5182 4.2038 2.6779 22 1 -0.3632 0.5516 0.8671 23 1 -0.3634 0.4751 -0.9112 24 1 -0.3633 -1.0267 0.0443 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 0.9228 -0.0057 -3.2663 28 1 2.6254 5.2221 4.1085 29 1 0.2446 3.3245 3.2612 30 1 0.2839 5.1040 3.2461 31 1 -0.0419 4.2082 1.7429 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725629985.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:03 Heat of formation + Delta-G solvation = -54.311651 kcal Electronic energy + Delta-G solvation = -15643.250402 eV Core-core repulsion = 13128.530868 eV Total energy + Delta-G solvation = -2514.719534 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.080 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.30716 -37.28015 -36.10973 -33.18941 -31.94344 -29.82014 -28.01656 -26.52056 -24.11995 -22.61494 -20.82635 -19.51465 -18.15038 -17.57895 -16.84367 -16.01394 -15.85440 -15.29947 -14.75939 -14.54535 -14.05198 -13.68469 -13.46021 -13.37834 -12.95284 -12.84713 -12.72882 -12.36225 -12.00513 -11.96347 -11.91466 -11.66585 -11.52288 -11.09825 -10.70703 -10.32936 -9.73703 -9.45318 -8.44037 -8.02865 -5.70963 -5.47363 1.36835 1.47237 1.50368 1.57454 1.96410 2.45961 2.48336 3.24211 3.41193 3.51736 4.41446 4.52275 4.58509 4.79630 4.85978 4.89890 4.99672 5.06464 5.16592 5.25185 5.46663 5.55297 5.63530 5.78128 5.91422 6.09780 6.21132 6.49927 6.80575 6.85433 7.38189 7.96243 8.42247 8.96038 Molecular weight = 240.08amu Principal moments of inertia in cm(-1) A = 0.025487 B = 0.009407 C = 0.007706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.317821 B = 2975.839402 C = 3632.857407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.132 3.868 3 N -0.476 5.476 4 C -0.325 4.325 5 H 0.069 0.931 6 C -0.024 4.024 7 N -0.897 5.897 8 Si 0.996 3.004 9 H -0.286 1.286 10 H -0.249 1.249 11 H -0.275 1.275 12 C 0.467 3.533 13 O -0.655 6.655 14 C 0.094 3.906 15 H -0.025 1.025 16 C -0.815 4.815 17 H 0.053 0.947 18 S -0.150 6.150 19 C -0.166 4.166 20 C -0.153 4.153 21 C -0.072 4.072 22 H 0.003 0.997 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.096 0.904 26 H 0.005 0.995 27 H 0.268 0.732 28 H 0.176 0.824 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.286 1.592 -1.186 5.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.009 3.991 3 N -0.195 5.195 4 C -0.454 4.454 5 H 0.087 0.913 6 C -0.221 4.221 7 N -0.539 5.539 8 Si 0.819 3.181 9 H -0.213 1.213 10 H -0.172 1.172 11 H -0.200 1.200 12 C 0.259 3.741 13 O -0.545 6.545 14 C 0.071 3.929 15 H -0.008 1.008 16 C -0.944 4.944 17 H 0.072 0.928 18 S 0.096 5.904 19 C -0.298 4.298 20 C -0.169 4.169 21 C -0.131 4.131 22 H 0.023 0.977 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.114 0.886 26 H 0.024 0.976 27 H 0.078 0.922 28 H 0.194 0.806 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.206 1.530 -0.459 4.499 hybrid contribution -0.499 -0.573 -1.351 1.550 sum -4.705 0.957 -1.810 5.131 Atomic orbital electron populations 1.21769 0.95556 1.00066 0.99767 1.21233 0.95527 0.84013 0.98369 1.43989 1.57895 1.11657 1.05919 1.19925 1.34165 1.07113 0.84163 0.91279 1.26090 0.96803 0.97693 1.01465 1.70183 1.30706 1.26233 1.26817 0.85006 0.77803 0.78323 0.76927 1.21262 1.17241 1.20036 1.22217 0.77181 0.92119 0.82576 1.90211 1.59096 1.72496 1.32736 1.17394 0.94934 0.88419 0.92155 1.00803 1.23902 0.91810 1.65677 1.13030 0.92831 1.81146 1.11551 1.69371 1.28311 1.24571 0.95408 1.07259 1.02524 1.21394 0.97468 1.00926 0.97062 1.20378 0.90335 1.01837 1.00579 0.97735 0.91009 0.91770 0.88586 0.97641 0.92169 0.80648 0.93031 0.88618 0.94093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -8.71 9.70 71.98 0.70 -8.01 16 2 C 0.13 11.20 5.28 86.38 0.46 11.65 16 3 N -0.48 -44.46 2.64 -635.52 -1.68 -46.14 16 4 C -0.33 -29.99 8.94 84.04 0.75 -29.24 16 5 H 0.07 6.80 5.74 -2.91 -0.02 6.78 16 6 C -0.02 -1.93 5.13 84.93 0.44 -1.49 16 7 N -0.90 -70.70 8.11 21.66 0.18 -70.52 16 8 Si 1.00 67.58 29.58 68.60 2.03 69.61 16 9 H -0.29 -19.74 7.11 99.48 0.71 -19.03 16 10 H -0.25 -15.06 7.11 99.48 0.71 -14.35 16 11 H -0.27 -18.52 7.11 99.48 0.71 -17.81 16 12 C 0.47 45.13 6.39 87.66 0.56 45.69 16 13 O -0.65 -64.18 15.60 -3.05 -0.05 -64.23 16 14 C 0.09 8.90 2.11 -13.50 -0.03 8.87 16 15 H -0.03 -2.53 6.87 -2.39 -0.02 -2.54 16 16 C -0.81 -80.89 10.71 71.29 0.76 -80.12 16 17 H 0.05 5.68 7.99 -2.91 -0.02 5.65 16 18 S -0.15 -12.85 22.98 -56.49 -1.30 -14.15 16 19 C -0.17 -13.02 10.79 68.10 0.73 -12.28 16 20 C -0.15 -12.78 4.81 -16.69 -0.08 -12.86 16 21 C -0.07 -5.12 9.61 71.23 0.68 -4.44 16 22 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 23 H 0.07 5.64 6.33 -2.39 -0.02 5.63 16 24 H 0.06 4.29 8.14 -2.39 -0.02 4.27 16 25 H 0.10 8.11 5.70 -2.38 -0.01 8.10 16 26 H 0.01 0.45 7.54 -2.39 -0.02 0.44 16 27 H 0.27 19.47 8.31 -92.71 -0.77 18.70 16 28 H 0.18 11.56 8.06 -2.91 -0.02 11.54 16 29 H 0.05 3.70 8.02 -2.39 -0.02 3.68 16 30 H 0.10 5.65 8.09 -2.39 -0.02 5.63 16 31 H 0.04 2.90 8.14 -2.39 -0.02 2.88 16 Total: -2.00 -193.13 270.79 5.29 -187.85 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 1.13 Total: 19.82 kcal Atomic # 6 Polarization: -87.21 SS G_CDS: 4.98 Total: -82.24 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -1.50 Total: -116.66 kcal Atomic # 8 Polarization: -64.18 SS G_CDS: -0.05 Total: -64.23 kcal Atomic # 14 Polarization: 67.58 SS G_CDS: 2.03 Total: 69.61 kcal Atomic # 16 Polarization: -12.85 SS G_CDS: -1.30 Total: -14.15 kcal Total: -193.13 5.29 -187.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725629985.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.534 kcal (2) G-P(sol) polarization free energy of solvation -193.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -187.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds