Wall clock time and date at job start Mon Mar 30 2020 04:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.46922 * 2 1 4 4 C 1.37099 * 119.99956 * 264.40474 * 3 2 1 5 5 H 1.08001 * 119.99866 * 144.83055 * 4 3 2 6 6 C 1.38949 * 120.00543 * 324.83330 * 4 3 2 7 7 N 1.31406 * 120.00177 * 160.43445 * 6 4 3 8 8 Si 1.86804 * 119.99757 * 340.43278 * 6 4 3 9 9 H 1.48505 * 109.46830 * 90.45760 * 8 6 4 10 10 H 1.48495 * 109.47102 * 210.45616 * 8 6 4 11 11 H 1.48502 * 109.47042 * 330.46023 * 8 6 4 12 12 C 1.34774 * 120.00039 * 84.41050 * 3 2 1 13 13 O 1.21291 * 120.00353 * 182.53133 * 12 3 2 14 14 C 1.50707 * 119.99849 * 2.53369 * 12 3 2 15 15 H 1.09003 * 108.99427 * 312.53811 * 14 12 3 16 16 C 1.50863 * 109.10283 * 71.58394 * 14 12 3 17 17 H 1.08006 * 127.54317 * 300.76684 * 16 14 12 18 18 S 1.76982 * 104.91395 * 120.51241 * 16 14 12 19 19 C 1.76457 * 96.89364 * 359.97438 * 18 16 14 20 20 C 1.30886 * 109.81460 * 0.02562 * 19 18 16 21 21 C 1.50696 * 121.50762 * 179.97438 * 20 19 18 22 22 H 1.09005 * 109.47087 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47273 * 299.99442 * 1 2 3 24 24 H 1.09001 * 109.47439 * 60.00181 * 1 2 3 25 25 H 1.09001 * 109.46664 * 240.00234 * 2 1 3 26 26 H 1.08997 * 109.47717 * 120.00503 * 2 1 3 27 27 H 0.97002 * 120.00100 * 179.97438 * 7 6 4 28 28 H 1.07996 * 125.09179 * 179.97438 * 19 18 16 29 29 H 1.09008 * 109.47271 * 359.97438 * 21 20 19 30 30 H 1.08999 * 109.47364 * 119.97416 * 21 20 19 31 31 H 1.08997 * 109.46904 * 239.97500 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3559 1.9889 -1.1817 5 1 2.1689 3.0437 -1.3191 6 6 2.9385 1.2479 -2.2025 7 7 2.9138 1.6971 -3.4371 8 14 3.7572 -0.3870 -1.8196 9 1 2.7606 -1.4808 -1.9445 10 1 4.8696 -0.6193 -2.7755 11 1 4.2921 -0.3604 -0.4345 12 6 2.1357 2.0545 1.1616 13 8 2.4960 3.2126 1.1577 14 6 1.8192 1.3682 2.4656 15 1 0.8670 0.8464 2.3699 16 6 2.9036 0.3649 2.7713 17 1 3.2068 -0.4800 2.1707 18 16 3.5752 0.8796 4.3258 19 6 2.5301 2.2830 4.5538 20 6 1.7081 2.3932 3.5412 21 6 0.6950 3.5064 3.4668 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8932 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.3209 1.1800 -4.1497 28 1 2.5631 2.9504 5.4022 29 1 0.7839 4.1383 4.3506 30 1 0.8764 4.1037 2.5733 31 1 -0.3081 3.0823 3.4229 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725629987.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:06 Heat of formation + Delta-G solvation = -57.500003 kcal Electronic energy + Delta-G solvation = -15696.998490 eV Core-core repulsion = 13182.140699 eV Total energy + Delta-G solvation = -2514.857792 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.080 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.49993 -37.26691 -36.21414 -34.20319 -31.22568 -30.50095 -28.17287 -26.44330 -24.54588 -22.89282 -20.98326 -18.80119 -18.70633 -17.85539 -17.01231 -16.94774 -15.59674 -15.22828 -15.02793 -14.60015 -14.36293 -14.21040 -13.70682 -13.56083 -13.32122 -13.03891 -12.75041 -12.50245 -12.34022 -11.99130 -11.80560 -11.68353 -11.38254 -11.17029 -10.85731 -10.37896 -9.78893 -9.48669 -8.46562 -8.44295 -5.96386 -5.63245 1.09783 1.20794 1.47844 1.50307 1.93688 2.27707 2.37814 3.03930 3.23033 3.29371 4.12883 4.37832 4.49055 4.52482 4.65374 4.76439 4.82105 4.88302 4.98571 5.05405 5.22620 5.34589 5.39200 5.66640 5.75136 6.06858 6.11762 6.35732 6.73650 6.83553 7.18068 7.58083 8.30358 8.75987 Molecular weight = 240.08amu Principal moments of inertia in cm(-1) A = 0.029347 B = 0.009318 C = 0.008563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.886205 B = 3004.105991 C = 3269.238082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.083 3.917 3 N -0.494 5.494 4 C -0.318 4.318 5 H 0.045 0.955 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.940 3.060 9 H -0.236 1.236 10 H -0.266 1.266 11 H -0.301 1.301 12 C 0.471 3.529 13 O -0.637 6.637 14 C 0.088 3.912 15 H 0.006 0.994 16 C -0.808 4.808 17 H 0.069 0.931 18 S -0.157 6.157 19 C -0.167 4.167 20 C -0.154 4.154 21 C -0.079 4.079 22 H 0.093 0.907 23 H 0.048 0.952 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.279 0.721 28 H 0.171 0.829 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.020 -4.211 5.992 9.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.040 4.040 3 N -0.216 5.216 4 C -0.446 4.446 5 H 0.063 0.937 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.766 3.234 9 H -0.162 1.162 10 H -0.192 1.192 11 H -0.228 1.228 12 C 0.264 3.736 13 O -0.524 6.524 14 C 0.066 3.934 15 H 0.023 0.977 16 C -0.937 4.937 17 H 0.087 0.913 18 S 0.089 5.911 19 C -0.298 4.298 20 C -0.170 4.170 21 C -0.138 4.138 22 H 0.112 0.888 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.189 0.811 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.773 -4.278 6.494 9.124 hybrid contribution -0.127 0.096 -1.344 1.354 sum -4.899 -4.182 5.149 8.247 Atomic orbital electron populations 1.21995 0.94069 1.02835 1.01324 1.21946 0.96728 0.84296 1.01025 1.43886 1.59721 1.12882 1.05107 1.18886 1.39512 0.95357 0.90826 0.93712 1.25840 0.96207 1.02087 0.94408 1.69814 1.44758 1.41569 0.99573 0.86056 0.79328 0.80763 0.77229 1.16160 1.19241 1.22833 1.22979 0.77576 0.86114 0.86979 1.90250 1.53586 1.20230 1.88297 1.17630 0.96438 0.91312 0.88061 0.97669 1.24114 1.35044 1.23093 1.11446 0.91313 1.81434 1.49855 1.30022 1.29764 1.24640 1.00648 1.01881 1.02675 1.21422 1.00904 0.99117 0.95509 1.20463 0.96333 0.95230 1.01795 0.88805 0.93326 0.93033 0.92405 0.91075 0.91182 0.81137 0.89681 0.94111 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -9.87 10.05 71.98 0.72 -9.15 16 2 C 0.08 6.64 4.33 86.38 0.37 7.02 16 3 N -0.49 -44.69 2.25 -635.54 -1.43 -46.12 16 4 C -0.32 -29.88 9.46 84.04 0.79 -29.08 16 5 H 0.04 4.57 7.84 -2.91 -0.02 4.55 16 6 C 0.01 1.23 5.34 84.93 0.45 1.68 16 7 N -0.92 -78.17 13.96 21.66 0.30 -77.87 16 8 Si 0.94 72.18 24.93 68.60 1.71 73.89 16 9 H -0.24 -16.44 6.48 99.48 0.64 -15.80 16 10 H -0.27 -18.78 7.11 99.48 0.71 -18.08 16 11 H -0.30 -25.88 7.11 99.48 0.71 -25.18 16 12 C 0.47 44.00 6.60 87.66 0.58 44.58 16 13 O -0.64 -62.86 14.59 -3.06 -0.04 -62.90 16 14 C 0.09 7.71 2.14 -13.50 -0.03 7.68 16 15 H 0.01 0.52 6.01 -2.39 -0.01 0.51 16 16 C -0.81 -74.08 10.34 71.29 0.74 -73.34 16 17 H 0.07 6.64 6.84 -2.91 -0.02 6.62 16 18 S -0.16 -12.85 22.98 -56.49 -1.30 -14.15 16 19 C -0.17 -12.51 10.74 67.90 0.73 -11.78 16 20 C -0.15 -12.15 4.84 -16.90 -0.08 -12.23 16 21 C -0.08 -5.36 9.92 71.23 0.71 -4.65 16 22 H 0.09 5.43 8.14 -2.38 -0.02 5.41 16 23 H 0.05 3.33 6.66 -2.39 -0.02 3.32 16 24 H 0.05 3.49 8.14 -2.39 -0.02 3.47 16 25 H 0.06 4.53 2.88 -2.39 -0.01 4.53 16 26 H 0.07 5.93 4.84 -2.39 -0.01 5.92 16 27 H 0.28 21.75 8.31 -92.71 -0.77 20.98 16 28 H 0.17 10.88 8.06 -2.91 -0.02 10.86 16 29 H 0.08 4.91 7.98 -2.38 -0.02 4.89 16 30 H 0.04 2.99 6.79 -2.39 -0.02 2.98 16 31 H 0.07 4.18 8.14 -2.39 -0.02 4.16 16 Total: -2.00 -192.58 263.79 5.31 -187.28 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 1.08 Total: 19.14 kcal Atomic # 6 Polarization: -84.26 SS G_CDS: 4.99 Total: -79.27 kcal Atomic # 7 Polarization: -122.86 SS G_CDS: -1.13 Total: -123.99 kcal Atomic # 8 Polarization: -62.86 SS G_CDS: -0.04 Total: -62.90 kcal Atomic # 14 Polarization: 72.18 SS G_CDS: 1.71 Total: 73.89 kcal Atomic # 16 Polarization: -12.85 SS G_CDS: -1.30 Total: -14.15 kcal Total: -192.58 5.31 -187.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725629987.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.776 kcal (2) G-P(sol) polarization free energy of solvation -192.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -187.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds