Wall clock time and date at job start Mon Mar 30 2020 04:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.30880 * 121.50934 * 2 1 4 4 S 1.76452 * 109.81639 * 179.97438 * 3 2 1 5 5 C 1.76766 * 96.87574 * 359.95387 * 4 3 2 6 6 H 1.07999 * 127.44254 * 180.10148 * 5 4 3 7 7 C 1.49002 * 121.50530 * 179.97438 * 2 1 3 8 8 H 1.08997 * 109.10727 * 59.62196 * 7 2 1 9 9 C 1.50702 * 109.10711 * 300.52766 * 7 2 1 10 10 O 1.21277 * 119.99733 * 330.71798 * 9 7 2 11 11 N 1.34779 * 119.99935 * 150.70727 * 9 7 2 12 12 C 1.46501 * 119.99816 * 184.26030 * 11 9 7 13 13 C 1.46495 * 119.99893 * 4.26653 * 11 9 7 14 14 C 1.50698 * 109.47104 * 83.98695 * 13 11 9 15 15 H 1.07996 * 120.00410 * 0.02562 * 14 13 11 16 16 C 1.37881 * 120.00294 * 179.97438 * 14 13 11 17 17 N 1.31517 * 119.99579 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00440 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47426 * 90.00074 * 18 16 14 20 20 H 1.48504 * 109.47154 * 210.00525 * 18 16 14 21 21 H 1.48501 * 109.46746 * 329.99807 * 18 16 14 22 22 H 1.09008 * 109.47230 * 270.02892 * 1 2 3 23 23 H 1.09006 * 109.46955 * 30.02606 * 1 2 3 24 24 H 1.08995 * 109.47680 * 150.02516 * 1 2 3 25 25 H 1.07998 * 125.09149 * 359.97220 * 3 2 1 26 26 H 1.08994 * 109.47585 * 275.52502 * 12 11 9 27 27 H 1.09004 * 109.46871 * 35.52944 * 12 11 9 28 28 H 1.09000 * 109.46691 * 155.51896 * 12 11 9 29 29 H 1.09000 * 109.46962 * 203.98814 * 13 11 9 30 30 H 1.09000 * 109.47551 * 323.98409 * 13 11 9 31 31 H 0.97003 * 120.00147 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1910 1.1158 0.0000 4 16 3.9189 0.7582 0.0007 5 6 3.7705 -1.0032 0.0025 6 1 4.5698 -1.7295 0.0049 7 6 2.2856 -1.2704 0.0006 8 1 2.0280 -1.8471 -0.8877 9 6 1.9267 -2.0684 1.2275 10 8 1.5774 -1.4996 2.2400 11 7 1.9938 -3.4142 1.1995 12 6 1.5563 -4.1937 2.3602 13 6 2.5043 -4.0975 0.0085 14 6 4.0095 -4.1461 0.0637 15 1 4.5334 -3.7118 0.9023 16 6 4.7178 -4.7459 -0.9560 17 7 4.0798 -5.2751 -1.9770 18 14 6.5835 -4.8067 -0.8872 19 1 7.0131 -6.0475 -0.1937 20 1 7.1303 -4.7966 -2.2679 21 1 7.0903 -3.6242 -0.1456 22 1 -0.3634 0.0005 1.0277 23 1 -0.3633 0.8898 -0.5143 24 1 -0.3634 -0.8901 -0.5134 25 1 1.7621 2.1070 -0.0004 26 1 2.3724 -4.2642 3.0792 27 1 0.7023 -3.7025 2.8267 28 1 1.2683 -5.1944 2.0381 29 1 2.1090 -5.1127 -0.0254 30 1 2.1907 -3.5556 -0.8838 31 1 4.5780 -5.6968 -2.6945 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725630145.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:00 Heat of formation + Delta-G solvation = 10.022870 kcal Electronic energy + Delta-G solvation = -15460.807724 eV Core-core repulsion = 12948.877944 eV Total energy + Delta-G solvation = -2511.929780 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.080 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -36.93177 -33.55935 -32.74265 -30.86718 -27.46470 -25.97083 -25.08018 -23.59508 -21.21047 -19.32212 -17.06627 -15.42390 -14.69217 -14.05499 -13.91579 -13.14866 -12.57583 -12.37305 -11.53928 -11.36266 -10.79688 -10.56759 -10.30140 -10.18593 -10.06077 -9.93485 -9.57899 -9.35921 -8.95998 -8.60324 -8.48397 -8.17404 -7.96245 -7.74805 -7.11420 -6.76891 -6.44322 -5.78758 -4.97989 -4.64073 -2.57676 -1.75585 4.37691 4.44542 4.65181 4.73508 5.27929 5.70982 5.93083 6.20272 6.68472 6.94008 7.31322 7.37002 7.56310 7.60177 7.67721 7.74526 7.77022 8.06861 8.44266 8.47442 8.80742 8.99983 9.20891 9.32012 9.50333 9.53985 9.82176 10.21018 10.32764 10.58108 10.93693 10.99875 11.40409 12.44420 Molecular weight = 240.08amu Principal moments of inertia in cm(-1) A = 0.022280 B = 0.009781 C = 0.007822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.443035 B = 2862.012129 C = 3578.792542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.154 4.154 3 C -0.177 4.177 4 S -0.158 6.158 5 C -0.734 4.734 6 H 0.123 0.877 7 C 0.099 3.901 8 H 0.009 0.991 9 C 0.517 3.483 10 O -0.609 6.609 11 N -0.622 5.622 12 C 0.100 3.900 13 C 0.248 3.752 14 C -0.468 4.468 15 H 0.059 0.941 16 C 0.051 3.949 17 N -0.914 5.914 18 Si 0.890 3.110 19 H -0.292 1.292 20 H -0.292 1.292 21 H -0.271 1.271 22 H 0.050 0.950 23 H 0.038 0.962 24 H 0.044 0.956 25 H 0.113 0.887 26 H 0.028 0.972 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.016 0.984 30 H 0.042 0.958 31 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.834 1.157 1.917 5.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.173 4.173 3 C -0.310 4.310 4 S 0.093 5.907 5 C -0.862 4.862 6 H 0.140 0.860 7 C 0.076 3.924 8 H 0.026 0.974 9 C 0.311 3.689 10 O -0.493 6.493 11 N -0.354 5.354 12 C -0.044 4.044 13 C 0.128 3.872 14 C -0.508 4.508 15 H 0.077 0.923 16 C -0.146 4.146 17 N -0.558 5.558 18 Si 0.719 3.281 19 H -0.219 1.219 20 H -0.218 1.218 21 H -0.196 1.196 22 H 0.069 0.931 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.131 0.869 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.034 0.966 30 H 0.060 0.940 31 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.758 2.130 2.265 4.878 hybrid contribution 0.009 -1.122 0.090 1.125 sum -3.749 1.008 2.355 4.541 Atomic orbital electron populations 1.20352 0.94160 0.99330 1.00015 1.21033 0.94017 0.95452 1.06820 1.24045 0.98198 0.98004 1.10765 1.81766 1.04569 1.17011 1.87373 1.24604 0.91535 0.84024 1.86087 0.85971 1.17521 0.95228 0.89117 0.90484 0.97374 1.23239 0.71796 0.80902 0.92952 1.90309 1.51870 1.70928 1.36189 1.48386 1.64358 1.06462 1.16219 1.21188 0.97989 0.94752 0.90486 1.19228 0.93828 0.91121 0.83071 1.21614 0.92094 1.31715 1.05360 0.92317 1.24806 0.97618 0.96628 0.95517 1.69983 1.34434 1.41278 1.10100 0.86572 0.87512 0.77519 0.76462 1.21929 1.21834 1.19569 0.93118 0.94323 0.93669 0.86919 0.95336 0.93738 0.93270 0.96573 0.94008 0.94056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.81 9.69 36.00 0.35 -2.46 16 2 C -0.15 -6.43 4.83 -101.85 -0.49 -6.92 16 3 C -0.18 -7.16 10.81 29.05 0.31 -6.85 16 4 S -0.16 -6.84 22.98 -107.50 -2.47 -9.31 16 5 C -0.73 -35.55 10.82 36.09 0.39 -35.16 16 6 H 0.12 6.35 6.23 -52.49 -0.33 6.02 16 7 C 0.10 4.53 2.26 -94.80 -0.21 4.31 16 8 H 0.01 0.43 6.04 -51.93 -0.31 0.12 16 9 C 0.52 23.27 6.35 -10.98 -0.07 23.20 16 10 O -0.61 -27.90 15.93 5.56 0.09 -27.81 16 11 N -0.62 -26.40 2.87 -182.96 -0.53 -26.93 16 12 C 0.10 3.68 10.38 59.85 0.62 4.30 16 13 C 0.25 10.87 5.00 -5.20 -0.03 10.84 16 14 C -0.47 -21.32 7.27 -34.44 -0.25 -21.58 16 15 H 0.06 2.80 7.46 -52.49 -0.39 2.41 16 16 C 0.05 2.24 5.46 -17.82 -0.10 2.15 16 17 N -0.91 -39.99 13.29 55.43 0.74 -39.25 16 18 Si 0.89 34.41 29.54 -169.99 -5.02 29.39 16 19 H -0.29 -10.70 7.11 56.52 0.40 -10.30 16 20 H -0.29 -10.93 7.11 56.52 0.40 -10.53 16 21 H -0.27 -10.86 7.11 56.52 0.40 -10.46 16 22 H 0.05 1.79 8.14 -51.92 -0.42 1.36 16 23 H 0.04 1.20 8.10 -51.93 -0.42 0.78 16 24 H 0.04 1.55 8.14 -51.93 -0.42 1.13 16 25 H 0.11 4.04 8.06 -52.49 -0.42 3.62 16 26 H 0.03 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.04 1.56 7.66 -51.93 -0.40 1.16 16 28 H 0.05 1.63 7.78 -51.93 -0.40 1.22 16 29 H 0.02 0.69 7.78 -51.93 -0.40 0.29 16 30 H 0.04 1.95 5.99 -51.93 -0.31 1.64 16 31 H 0.25 10.31 8.31 -40.82 -0.34 9.97 16 LS Contribution 276.62 15.07 4.17 4.17 Total: -2.00 -92.57 276.62 -6.29 -98.86 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -3.79 Total: -0.94 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 0.52 Total: -28.17 kcal Atomic # 7 Polarization: -66.39 SS G_CDS: 0.21 Total: -66.18 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: 0.09 Total: -27.81 kcal Atomic # 14 Polarization: 34.41 SS G_CDS: -5.02 Total: 29.39 kcal Atomic # 16 Polarization: -6.84 SS G_CDS: -2.47 Total: -9.31 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -92.57 -6.29 -98.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725630145.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.885 kcal (2) G-P(sol) polarization free energy of solvation -92.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds