Wall clock time and date at job start Mon Mar 30 2020 04:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.30880 * 121.50934 * 2 1 4 4 S 1.76452 * 109.81639 * 179.97438 * 3 2 1 5 5 C 1.76766 * 96.87574 * 359.95387 * 4 3 2 6 6 H 1.07999 * 127.44254 * 180.10148 * 5 4 3 7 7 C 1.49002 * 121.50530 * 179.97438 * 2 1 3 8 8 H 1.08997 * 109.10727 * 59.62196 * 7 2 1 9 9 C 1.50702 * 109.10711 * 300.52766 * 7 2 1 10 10 O 1.21277 * 119.99733 * 330.71798 * 9 7 2 11 11 N 1.34779 * 119.99935 * 150.70727 * 9 7 2 12 12 C 1.46501 * 119.99816 * 184.26030 * 11 9 7 13 13 C 1.46495 * 119.99893 * 4.26653 * 11 9 7 14 14 C 1.50698 * 109.47104 * 83.98695 * 13 11 9 15 15 H 1.07996 * 120.00410 * 0.02562 * 14 13 11 16 16 C 1.37881 * 120.00294 * 179.97438 * 14 13 11 17 17 N 1.31517 * 119.99579 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00440 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47426 * 90.00074 * 18 16 14 20 20 H 1.48504 * 109.47154 * 210.00525 * 18 16 14 21 21 H 1.48501 * 109.46746 * 329.99807 * 18 16 14 22 22 H 1.09008 * 109.47230 * 270.02892 * 1 2 3 23 23 H 1.09006 * 109.46955 * 30.02606 * 1 2 3 24 24 H 1.08995 * 109.47680 * 150.02516 * 1 2 3 25 25 H 1.07998 * 125.09149 * 359.97220 * 3 2 1 26 26 H 1.08994 * 109.47585 * 275.52502 * 12 11 9 27 27 H 1.09004 * 109.46871 * 35.52944 * 12 11 9 28 28 H 1.09000 * 109.46691 * 155.51896 * 12 11 9 29 29 H 1.09000 * 109.46962 * 203.98814 * 13 11 9 30 30 H 1.09000 * 109.47551 * 323.98409 * 13 11 9 31 31 H 0.97003 * 120.00147 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1910 1.1158 0.0000 4 16 3.9189 0.7582 0.0007 5 6 3.7705 -1.0032 0.0025 6 1 4.5698 -1.7295 0.0049 7 6 2.2856 -1.2704 0.0006 8 1 2.0280 -1.8471 -0.8877 9 6 1.9267 -2.0684 1.2275 10 8 1.5774 -1.4996 2.2400 11 7 1.9938 -3.4142 1.1995 12 6 1.5563 -4.1937 2.3602 13 6 2.5043 -4.0975 0.0085 14 6 4.0095 -4.1461 0.0637 15 1 4.5334 -3.7118 0.9023 16 6 4.7178 -4.7459 -0.9560 17 7 4.0798 -5.2751 -1.9770 18 14 6.5835 -4.8067 -0.8872 19 1 7.0131 -6.0475 -0.1937 20 1 7.1303 -4.7966 -2.2679 21 1 7.0903 -3.6242 -0.1456 22 1 -0.3634 0.0005 1.0277 23 1 -0.3633 0.8898 -0.5143 24 1 -0.3634 -0.8901 -0.5134 25 1 1.7621 2.1070 -0.0004 26 1 2.3724 -4.2642 3.0792 27 1 0.7023 -3.7025 2.8267 28 1 1.2683 -5.1944 2.0381 29 1 2.1090 -5.1127 -0.0254 30 1 2.1907 -3.5556 -0.8838 31 1 4.5780 -5.6968 -2.6945 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725630145.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:58 Heat of formation + Delta-G solvation = -67.544391 kcal Electronic energy + Delta-G solvation = -15464.171293 eV Core-core repulsion = 12948.877944 eV Total energy + Delta-G solvation = -2515.293349 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.080 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -40.42779 -36.86769 -36.23285 -34.32402 -30.76227 -29.32931 -28.25559 -26.86100 -24.71981 -22.87015 -20.38884 -18.85569 -18.22250 -17.55843 -17.29027 -16.41835 -15.93835 -15.68999 -14.71604 -14.48993 -13.99100 -13.69898 -13.55583 -13.37769 -13.26702 -13.16190 -12.68353 -12.58061 -12.43053 -11.92217 -11.82393 -11.62596 -11.50704 -11.15309 -10.54809 -10.26546 -9.96079 -9.22238 -8.41897 -8.05951 -6.11746 -5.46640 1.25355 1.37886 1.49372 1.53071 1.98065 2.30663 2.52796 2.87866 3.19944 3.40376 4.31797 4.45492 4.54373 4.65494 4.78347 4.80318 4.88077 4.96921 4.99392 5.13825 5.23373 5.46705 5.74271 5.82629 6.12132 6.21025 6.34719 6.63176 6.75880 7.00804 7.10137 7.49788 7.86848 9.02669 Molecular weight = 240.08amu Principal moments of inertia in cm(-1) A = 0.022280 B = 0.009781 C = 0.007822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.443035 B = 2862.012129 C = 3578.792542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.166 4.166 3 C -0.161 4.161 4 S -0.164 6.164 5 C -0.793 4.793 6 H 0.070 0.930 7 C 0.092 3.908 8 H -0.025 1.025 9 C 0.517 3.483 10 O -0.620 6.620 11 N -0.626 5.626 12 C 0.097 3.903 13 C 0.268 3.732 14 C -0.506 4.506 15 H 0.021 0.979 16 C 0.007 3.993 17 N -0.930 5.930 18 Si 0.963 3.037 19 H -0.247 1.247 20 H -0.265 1.265 21 H -0.303 1.303 22 H 0.057 0.943 23 H 0.092 0.908 24 H 0.046 0.954 25 H 0.175 0.825 26 H 0.029 0.971 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.028 0.972 30 H 0.003 0.997 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.843 1.380 1.925 6.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.183 4.183 3 C -0.293 4.293 4 S 0.084 5.916 5 C -0.922 4.922 6 H 0.088 0.912 7 C 0.070 3.930 8 H -0.008 1.008 9 C 0.310 3.690 10 O -0.506 6.506 11 N -0.357 5.357 12 C -0.046 4.046 13 C 0.147 3.853 14 C -0.544 4.544 15 H 0.039 0.961 16 C -0.190 4.190 17 N -0.572 5.572 18 Si 0.788 3.212 19 H -0.171 1.171 20 H -0.189 1.189 21 H -0.230 1.230 22 H 0.075 0.925 23 H 0.110 0.890 24 H 0.065 0.935 25 H 0.192 0.808 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.046 0.954 30 H 0.021 0.979 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.813 2.286 2.267 5.790 hybrid contribution 0.255 -1.224 0.022 1.250 sum -4.558 1.062 2.289 5.210 Atomic orbital electron populations 1.20391 0.89371 1.02154 1.01223 1.21452 0.97467 0.93757 1.05584 1.24599 0.95666 1.00495 1.08546 1.81394 1.08068 1.12997 1.89182 1.24248 0.92052 0.86643 1.89297 0.91223 1.17497 0.94534 0.91382 0.89635 1.00758 1.22701 0.72082 0.81951 0.92315 1.90275 1.52829 1.71317 1.36142 1.48326 1.63537 1.06323 1.17561 1.21467 0.98530 0.96101 0.88459 1.18881 0.93336 0.90768 0.82364 1.21427 0.92827 1.34289 1.05904 0.96057 1.25694 1.03658 0.95157 0.94477 1.70042 1.36977 1.39992 1.10156 0.85513 0.79965 0.77880 0.77856 1.17124 1.18911 1.23028 0.92452 0.88966 0.93527 0.80795 0.95186 0.91864 0.89536 0.95376 0.97920 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -4.78 9.69 71.24 0.69 -4.09 16 2 C -0.17 -13.35 4.83 -16.89 -0.08 -13.43 16 3 C -0.16 -12.38 10.81 67.90 0.73 -11.64 16 4 S -0.16 -14.15 22.98 -56.49 -1.30 -15.45 16 5 C -0.79 -78.63 10.82 71.29 0.77 -77.86 16 6 H 0.07 7.56 6.23 -2.91 -0.02 7.54 16 7 C 0.09 8.47 2.26 -13.50 -0.03 8.44 16 8 H -0.02 -2.41 6.04 -2.39 -0.01 -2.42 16 9 C 0.52 46.41 6.35 87.66 0.56 46.97 16 10 O -0.62 -55.91 15.93 -3.02 -0.05 -55.96 16 11 N -0.63 -53.13 2.87 -851.15 -2.45 -55.58 16 12 C 0.10 6.91 10.38 127.77 1.33 8.24 16 13 C 0.27 23.73 5.00 85.63 0.43 24.16 16 14 C -0.51 -46.90 7.27 25.60 0.19 -46.72 16 15 H 0.02 2.09 7.46 -2.91 -0.02 2.07 16 16 C 0.01 0.59 5.46 84.66 0.46 1.06 16 17 N -0.93 -80.54 13.29 21.45 0.28 -80.25 16 18 Si 0.96 71.66 29.54 68.60 2.03 73.69 16 19 H -0.25 -16.62 7.11 99.48 0.71 -15.91 16 20 H -0.26 -18.46 7.11 99.48 0.71 -17.75 16 21 H -0.30 -24.18 7.11 99.48 0.71 -23.47 16 22 H 0.06 3.75 8.14 -2.38 -0.02 3.73 16 23 H 0.09 5.14 8.10 -2.38 -0.02 5.12 16 24 H 0.05 3.03 8.14 -2.39 -0.02 3.01 16 25 H 0.17 11.24 8.06 -2.91 -0.02 11.21 16 26 H 0.03 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.06 4.25 7.66 -2.38 -0.02 4.23 16 28 H 0.09 5.47 7.78 -2.39 -0.02 5.46 16 29 H 0.03 2.40 7.78 -2.39 -0.02 2.39 16 30 H 0.00 0.28 5.99 -2.39 -0.01 0.26 16 31 H 0.27 21.34 8.31 -92.71 -0.77 20.57 16 Total: -2.00 -194.99 276.62 4.69 -190.30 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 1.13 Total: 8.12 kcal Atomic # 6 Polarization: -69.92 SS G_CDS: 5.04 Total: -64.87 kcal Atomic # 7 Polarization: -133.67 SS G_CDS: -2.16 Total: -135.83 kcal Atomic # 8 Polarization: -55.91 SS G_CDS: -0.05 Total: -55.96 kcal Atomic # 14 Polarization: 71.66 SS G_CDS: 2.03 Total: 73.69 kcal Atomic # 16 Polarization: -14.15 SS G_CDS: -1.30 Total: -15.45 kcal Total: -194.99 4.69 -190.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725630145.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.753 kcal (2) G-P(sol) polarization free energy of solvation -194.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -190.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds