Wall clock time and date at job start Mon Mar 30 2020 04:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.30876 * 121.51167 * 2 1 4 4 S 1.76455 * 109.81658 * 179.72995 * 3 2 1 5 5 C 1.76977 * 96.89518 * 359.97438 * 4 3 2 6 6 H 1.08006 * 127.54370 * 179.97438 * 5 4 3 7 7 C 1.49003 * 121.50387 * 179.71530 * 2 1 3 8 8 H 1.09001 * 109.10864 * 300.78215 * 7 2 1 9 9 C 1.50703 * 109.10517 * 59.76214 * 7 2 1 10 10 O 1.21276 * 119.99881 * 26.08702 * 9 7 2 11 11 N 1.34774 * 119.99825 * 206.08679 * 9 7 2 12 12 C 1.46495 * 120.00229 * 3.97813 * 11 9 7 13 13 C 1.46506 * 119.99863 * 183.98304 * 11 9 7 14 14 C 1.50703 * 109.47155 * 89.99661 * 13 11 9 15 15 H 1.08003 * 120.00043 * 0.02562 * 14 13 11 16 16 C 1.37875 * 119.99859 * 179.97438 * 14 13 11 17 17 N 1.31510 * 120.00208 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99850 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47319 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47181 * 120.00341 * 18 16 14 21 21 H 1.48505 * 109.47237 * 240.00380 * 18 16 14 22 22 H 1.09003 * 109.47110 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47502 * 120.02691 * 1 2 3 24 24 H 1.09001 * 109.47430 * 240.02467 * 1 2 3 25 25 H 1.08004 * 125.09062 * 359.72345 * 3 2 1 26 26 H 1.09001 * 109.46688 * 84.48410 * 12 11 9 27 27 H 1.09000 * 109.47522 * 204.47881 * 12 11 9 28 28 H 1.08995 * 109.47566 * 324.48166 * 12 11 9 29 29 H 1.08998 * 109.46879 * 209.99551 * 13 11 9 30 30 H 1.09000 * 109.46714 * 329.99856 * 13 11 9 31 31 H 0.97005 * 120.00492 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1911 1.1158 0.0000 4 16 3.9190 0.7581 0.0078 5 6 3.7709 -1.0055 0.0124 6 1 4.5691 -1.7330 0.0172 7 6 2.2856 -1.2704 0.0063 8 1 2.0227 -1.8457 0.8940 9 6 1.9320 -2.0718 -1.2200 10 8 1.5315 -1.5095 -2.2171 11 7 2.0607 -3.4133 -1.2085 12 6 2.4606 -4.1003 0.0220 13 6 1.8008 -4.1846 -2.4267 14 6 3.0769 -4.3211 -3.2167 15 1 3.9903 -3.8781 -2.8480 16 6 3.0785 -5.0125 -4.4096 17 7 1.9664 -5.5524 -4.8583 18 14 4.6604 -5.1824 -5.3884 19 1 5.7623 -4.4908 -4.6724 20 1 4.9960 -6.6209 -5.5411 21 1 4.4806 -4.5710 -6.7298 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3634 -0.5142 -0.8897 24 1 -0.3634 -0.5134 0.8902 25 1 1.7622 2.1070 -0.0043 26 1 1.5816 -4.2759 0.6421 27 1 2.9247 -5.0542 -0.2288 28 1 3.1731 -3.4822 0.5682 29 1 1.4320 -5.1745 -2.1582 30 1 1.0532 -3.6696 -3.0301 31 1 1.9675 -6.0385 -5.6977 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725630146.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:04 Heat of formation + Delta-G solvation = 0.943138 kcal Electronic energy + Delta-G solvation = -15199.817126 eV Core-core repulsion = 12687.493619 eV Total energy + Delta-G solvation = -2512.323507 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.080 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -36.95686 -33.77081 -32.58273 -31.24016 -27.65913 -26.10562 -24.98559 -23.83795 -21.43623 -19.51057 -17.13422 -15.45368 -15.12685 -14.18479 -13.92866 -13.53681 -12.58120 -12.31421 -11.72011 -11.38634 -10.93637 -10.70105 -10.48375 -10.16362 -10.08188 -10.02216 -9.68571 -9.46074 -9.04736 -8.93016 -8.80304 -8.50304 -8.22180 -7.97634 -7.26290 -7.11520 -6.47463 -5.75363 -5.24959 -4.82936 -2.83139 -2.21547 4.21393 4.27245 4.43865 4.52441 5.03084 5.51046 5.90641 6.22426 6.45859 6.60271 7.20420 7.38339 7.51277 7.54358 7.59726 7.62766 7.94098 7.98705 8.05500 8.45285 8.66368 8.79905 8.94438 9.10616 9.20208 9.49502 9.65626 9.71312 10.20852 10.26045 10.54252 10.75400 11.43491 12.23031 Molecular weight = 240.08amu Principal moments of inertia in cm(-1) A = 0.029988 B = 0.007018 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.468580 B = 3988.808685 C = 4317.592321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.143 4.143 3 C -0.171 4.171 4 S -0.147 6.147 5 C -0.761 4.761 6 H 0.100 0.900 7 C 0.090 3.910 8 H 0.000 1.000 9 C 0.510 3.490 10 O -0.578 6.578 11 N -0.620 5.620 12 C 0.099 3.901 13 C 0.243 3.757 14 C -0.491 4.491 15 H 0.059 0.941 16 C 0.047 3.953 17 N -0.911 5.911 18 Si 0.892 3.108 19 H -0.271 1.271 20 H -0.290 1.290 21 H -0.287 1.287 22 H 0.040 0.960 23 H 0.060 0.940 24 H 0.044 0.956 25 H 0.119 0.881 26 H 0.023 0.977 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.018 0.982 30 H 0.036 0.964 31 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.240 1.761 6.038 6.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.160 4.160 3 C -0.304 4.304 4 S 0.102 5.898 5 C -0.890 4.890 6 H 0.118 0.882 7 C 0.067 3.933 8 H 0.017 0.983 9 C 0.302 3.698 10 O -0.458 6.458 11 N -0.353 5.353 12 C -0.046 4.046 13 C 0.122 3.878 14 C -0.530 4.530 15 H 0.078 0.922 16 C -0.150 4.150 17 N -0.554 5.554 18 Si 0.721 3.279 19 H -0.196 1.196 20 H -0.216 1.216 21 H -0.214 1.214 22 H 0.060 0.940 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.136 0.864 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.309 2.722 5.378 6.168 hybrid contribution -0.222 -1.250 -0.923 1.570 sum -1.531 1.471 4.455 4.935 Atomic orbital electron populations 1.20433 0.93649 0.99646 1.00711 1.20985 0.94371 0.95042 1.05645 1.24158 0.98023 0.98328 1.09861 1.81743 1.04634 1.15105 1.88290 1.24077 0.90924 0.85735 1.88268 0.88207 1.17579 0.94840 0.90113 0.90727 0.98309 1.22641 0.73680 0.81162 0.92326 1.90396 1.48298 1.70181 1.36963 1.48079 1.69087 1.07066 1.11041 1.21401 0.98129 0.97289 0.87802 1.19036 0.96392 0.89997 0.82344 1.21879 0.96358 1.30112 1.04674 0.92241 1.24945 0.96135 0.96536 0.97381 1.70015 1.26027 1.38144 1.21192 0.86494 0.84789 0.76650 0.80001 1.19594 1.21647 1.21375 0.94044 0.92081 0.93753 0.86353 0.95885 0.92965 0.91236 0.96372 0.94562 0.93846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.93 9.94 36.01 0.36 -2.57 16 2 C -0.14 -5.69 4.81 -101.84 -0.49 -6.18 16 3 C -0.17 -6.62 10.74 29.05 0.31 -6.31 16 4 S -0.15 -6.04 22.98 -107.50 -2.47 -8.51 16 5 C -0.76 -34.42 10.77 36.09 0.39 -34.04 16 6 H 0.10 4.69 7.92 -52.48 -0.42 4.28 16 7 C 0.09 3.87 2.11 -94.80 -0.20 3.67 16 8 H 0.00 -0.01 6.80 -51.93 -0.35 -0.37 16 9 C 0.51 22.97 6.40 -10.98 -0.07 22.90 16 10 O -0.58 -27.81 15.11 5.56 0.08 -27.72 16 11 N -0.62 -26.52 2.86 -182.95 -0.52 -27.04 16 12 C 0.10 3.67 9.77 59.84 0.58 4.26 16 13 C 0.24 10.78 5.17 -5.19 -0.03 10.75 16 14 C -0.49 -22.32 9.39 -34.44 -0.32 -22.65 16 15 H 0.06 2.81 7.81 -52.48 -0.41 2.40 16 16 C 0.05 2.04 5.46 -17.82 -0.10 1.95 16 17 N -0.91 -39.22 13.29 55.43 0.74 -38.48 16 18 Si 0.89 33.11 29.54 -169.99 -5.02 28.09 16 19 H -0.27 -10.22 7.11 56.52 0.40 -9.81 16 20 H -0.29 -10.16 7.11 56.52 0.40 -9.76 16 21 H -0.29 -10.42 7.11 56.52 0.40 -10.01 16 22 H 0.04 1.26 7.98 -51.93 -0.41 0.84 16 23 H 0.06 2.21 7.32 -51.93 -0.38 1.83 16 24 H 0.04 1.40 8.14 -51.93 -0.42 0.97 16 25 H 0.12 4.06 8.06 -52.48 -0.42 3.64 16 26 H 0.02 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 1.84 8.03 -51.93 -0.42 1.42 16 28 H 0.07 2.64 6.03 -51.93 -0.31 2.32 16 29 H 0.02 0.79 8.07 -51.93 -0.42 0.37 16 30 H 0.04 1.72 7.37 -51.93 -0.38 1.34 16 31 H 0.25 10.12 8.31 -40.82 -0.34 9.78 16 LS Contribution 279.65 15.07 4.21 4.21 Total: -2.00 -91.64 279.65 -6.45 -98.09 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -3.91 Total: -0.42 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 0.44 Total: -28.22 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: 0.21 Total: -65.53 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: 0.08 Total: -27.72 kcal Atomic # 14 Polarization: 33.11 SS G_CDS: -5.02 Total: 28.09 kcal Atomic # 16 Polarization: -6.04 SS G_CDS: -2.47 Total: -8.51 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -91.64 -6.45 -98.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725630146.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.034 kcal (2) G-P(sol) polarization free energy of solvation -91.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds