Wall clock time and date at job start Mon Mar 30 2020 04:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.30876 * 121.51167 * 2 1 4 4 S 1.76455 * 109.81658 * 179.72995 * 3 2 1 5 5 C 1.76977 * 96.89518 * 359.97438 * 4 3 2 6 6 H 1.08006 * 127.54370 * 179.97438 * 5 4 3 7 7 C 1.49003 * 121.50387 * 179.71530 * 2 1 3 8 8 H 1.09001 * 109.10864 * 300.78215 * 7 2 1 9 9 C 1.50703 * 109.10517 * 59.76214 * 7 2 1 10 10 O 1.21276 * 119.99881 * 26.08702 * 9 7 2 11 11 N 1.34774 * 119.99825 * 206.08679 * 9 7 2 12 12 C 1.46495 * 120.00229 * 3.97813 * 11 9 7 13 13 C 1.46506 * 119.99863 * 183.98304 * 11 9 7 14 14 C 1.50703 * 109.47155 * 89.99661 * 13 11 9 15 15 H 1.08003 * 120.00043 * 0.02562 * 14 13 11 16 16 C 1.37875 * 119.99859 * 179.97438 * 14 13 11 17 17 N 1.31510 * 120.00208 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99850 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47319 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47181 * 120.00341 * 18 16 14 21 21 H 1.48505 * 109.47237 * 240.00380 * 18 16 14 22 22 H 1.09003 * 109.47110 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47502 * 120.02691 * 1 2 3 24 24 H 1.09001 * 109.47430 * 240.02467 * 1 2 3 25 25 H 1.08004 * 125.09062 * 359.72345 * 3 2 1 26 26 H 1.09001 * 109.46688 * 84.48410 * 12 11 9 27 27 H 1.09000 * 109.47522 * 204.47881 * 12 11 9 28 28 H 1.08995 * 109.47566 * 324.48166 * 12 11 9 29 29 H 1.08998 * 109.46879 * 209.99551 * 13 11 9 30 30 H 1.09000 * 109.46714 * 329.99856 * 13 11 9 31 31 H 0.97005 * 120.00492 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1911 1.1158 0.0000 4 16 3.9190 0.7581 0.0078 5 6 3.7709 -1.0055 0.0124 6 1 4.5691 -1.7330 0.0172 7 6 2.2856 -1.2704 0.0063 8 1 2.0227 -1.8457 0.8940 9 6 1.9320 -2.0718 -1.2200 10 8 1.5315 -1.5095 -2.2171 11 7 2.0607 -3.4133 -1.2085 12 6 2.4606 -4.1003 0.0220 13 6 1.8008 -4.1846 -2.4267 14 6 3.0769 -4.3211 -3.2167 15 1 3.9903 -3.8781 -2.8480 16 6 3.0785 -5.0125 -4.4096 17 7 1.9664 -5.5524 -4.8583 18 14 4.6604 -5.1824 -5.3884 19 1 5.7623 -4.4908 -4.6724 20 1 4.9960 -6.6209 -5.5411 21 1 4.4806 -4.5710 -6.7298 22 1 -0.3633 1.0277 -0.0005 23 1 -0.3634 -0.5142 -0.8897 24 1 -0.3634 -0.5134 0.8902 25 1 1.7622 2.1070 -0.0043 26 1 1.5816 -4.2759 0.6421 27 1 2.9247 -5.0542 -0.2288 28 1 3.1731 -3.4822 0.5682 29 1 1.4320 -5.1745 -2.1582 30 1 1.0532 -3.6696 -3.0301 31 1 1.9675 -6.0385 -5.6977 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725630146.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:03 Heat of formation + Delta-G solvation = -75.415182 kcal Electronic energy + Delta-G solvation = -15203.128271 eV Core-core repulsion = 12687.493619 eV Total energy + Delta-G solvation = -2515.634652 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.080 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -40.41591 -36.98286 -36.05432 -34.64709 -30.94254 -29.34320 -28.03099 -27.11454 -24.90166 -22.89295 -20.41428 -18.74227 -18.61703 -17.56533 -17.24411 -16.72187 -15.92533 -15.55573 -14.79339 -14.45609 -14.15865 -13.72133 -13.57526 -13.35487 -13.29617 -13.17118 -12.80413 -12.60017 -12.32863 -12.19714 -12.03886 -11.75892 -11.64582 -11.19834 -10.61896 -10.43885 -9.96261 -9.18656 -8.51592 -8.17895 -6.34242 -5.70683 1.26298 1.35362 1.43089 1.51232 1.89535 2.31956 2.46380 2.89047 3.04363 3.23262 4.34257 4.42135 4.50678 4.67128 4.69421 4.78869 4.87025 4.90873 5.04866 5.14989 5.18494 5.34025 5.64139 5.65154 6.03217 6.07582 6.21543 6.29122 6.65302 6.73761 7.11416 7.30843 7.91863 8.89412 Molecular weight = 240.08amu Principal moments of inertia in cm(-1) A = 0.029988 B = 0.007018 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.468580 B = 3988.808685 C = 4317.592321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.160 4.160 3 C -0.162 4.162 4 S -0.153 6.153 5 C -0.807 4.807 6 H 0.063 0.937 7 C 0.088 3.912 8 H 0.010 0.990 9 C 0.501 3.499 10 O -0.620 6.620 11 N -0.625 5.625 12 C 0.098 3.902 13 C 0.261 3.739 14 C -0.549 4.549 15 H 0.026 0.974 16 C 0.005 3.995 17 N -0.927 5.927 18 Si 0.978 3.022 19 H -0.288 1.288 20 H -0.244 1.244 21 H -0.266 1.266 22 H 0.087 0.913 23 H 0.036 0.964 24 H 0.073 0.927 25 H 0.174 0.826 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.025 0.975 30 H -0.007 1.007 31 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.761 1.732 5.637 6.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.176 4.176 3 C -0.294 4.294 4 S 0.094 5.906 5 C -0.937 4.937 6 H 0.081 0.919 7 C 0.066 3.934 8 H 0.028 0.972 9 C 0.293 3.707 10 O -0.504 6.504 11 N -0.356 5.356 12 C -0.045 4.045 13 C 0.140 3.860 14 C -0.587 4.587 15 H 0.045 0.955 16 C -0.193 4.193 17 N -0.567 5.567 18 Si 0.801 3.199 19 H -0.213 1.213 20 H -0.168 1.168 21 H -0.191 1.191 22 H 0.106 0.894 23 H 0.055 0.945 24 H 0.092 0.908 25 H 0.191 0.809 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.043 0.957 30 H 0.011 0.989 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.871 2.634 5.010 5.961 hybrid contribution -0.123 -1.311 -0.834 1.559 sum -1.994 1.323 4.177 4.813 Atomic orbital electron populations 1.20452 0.89559 1.02825 1.00873 1.21402 0.97406 0.93746 1.05065 1.24689 0.95851 1.00648 1.08167 1.81483 1.07730 1.11806 1.89543 1.24095 0.91612 0.88078 1.89880 0.91886 1.17666 0.94012 0.91959 0.89808 0.97223 1.23091 0.73185 0.81871 0.92521 1.90346 1.50432 1.71177 1.38488 1.48222 1.68197 1.06901 1.12313 1.21594 0.99826 0.97099 0.86003 1.18711 0.95308 0.89484 0.82544 1.21746 0.95309 1.34098 1.07586 0.95540 1.25992 1.01389 0.94378 0.97533 1.70083 1.28337 1.36401 1.21917 0.85255 0.77744 0.79088 0.77855 1.21324 1.16809 1.19105 0.89441 0.94507 0.90830 0.80867 0.91590 0.91423 0.92437 0.95713 0.98931 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -5.02 9.94 71.24 0.71 -4.32 16 2 C -0.16 -12.27 4.81 -16.89 -0.08 -12.35 16 3 C -0.16 -11.88 10.74 67.91 0.73 -11.15 16 4 S -0.15 -12.37 22.98 -56.49 -1.30 -13.67 16 5 C -0.81 -73.62 10.77 71.29 0.77 -72.85 16 6 H 0.06 6.09 7.92 -2.91 -0.02 6.07 16 7 C 0.09 7.51 2.11 -13.50 -0.03 7.48 16 8 H 0.01 0.86 6.80 -2.39 -0.02 0.84 16 9 C 0.50 45.33 6.40 87.66 0.56 45.89 16 10 O -0.62 -60.37 15.11 -3.02 -0.05 -60.41 16 11 N -0.62 -53.83 2.86 -851.14 -2.43 -56.26 16 12 C 0.10 7.20 9.77 127.77 1.25 8.45 16 13 C 0.26 23.45 5.17 85.63 0.44 23.89 16 14 C -0.55 -50.51 9.39 25.60 0.24 -50.27 16 15 H 0.03 2.55 7.81 -2.91 -0.02 2.53 16 16 C 0.00 0.41 5.46 84.65 0.46 0.87 16 17 N -0.93 -78.20 13.29 21.45 0.28 -77.91 16 18 Si 0.98 67.99 29.54 68.60 2.03 70.02 16 19 H -0.29 -20.72 7.11 99.48 0.71 -20.01 16 20 H -0.24 -15.25 7.11 99.48 0.71 -14.55 16 21 H -0.27 -17.60 7.11 99.48 0.71 -16.90 16 22 H 0.09 4.81 7.98 -2.39 -0.02 4.79 16 23 H 0.04 2.54 7.32 -2.39 -0.02 2.53 16 24 H 0.07 4.29 8.14 -2.39 -0.02 4.27 16 25 H 0.17 10.77 8.06 -2.91 -0.02 10.75 16 26 H 0.07 4.28 8.14 -2.39 -0.02 4.26 16 27 H 0.07 4.71 8.03 -2.39 -0.02 4.69 16 28 H 0.06 4.36 6.03 -2.39 -0.01 4.34 16 29 H 0.02 2.16 8.07 -2.39 -0.02 2.14 16 30 H -0.01 -0.72 7.37 -2.39 -0.02 -0.74 16 31 H 0.27 20.91 8.31 -92.70 -0.77 20.14 16 Total: -2.00 -192.13 279.65 4.70 -187.43 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 1.12 Total: 15.16 kcal Atomic # 6 Polarization: -69.41 SS G_CDS: 5.05 Total: -64.36 kcal Atomic # 7 Polarization: -132.02 SS G_CDS: -2.15 Total: -134.17 kcal Atomic # 8 Polarization: -60.37 SS G_CDS: -0.05 Total: -60.41 kcal Atomic # 14 Polarization: 67.99 SS G_CDS: 2.03 Total: 70.02 kcal Atomic # 16 Polarization: -12.37 SS G_CDS: -1.30 Total: -13.67 kcal Total: -192.13 4.70 -187.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725630146.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.014 kcal (2) G-P(sol) polarization free energy of solvation -192.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -187.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds