Wall clock time and date at job start Mon Mar 30 2020 04:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46827 * 2 1 4 4 C 1.50700 * 109.47158 * 119.99758 * 2 1 3 5 5 H 1.08000 * 120.00343 * 95.22754 * 4 2 1 6 6 C 1.37883 * 119.99940 * 275.23522 * 4 2 1 7 7 N 1.31507 * 120.00092 * 355.41942 * 6 4 2 8 8 Si 1.86801 * 119.99767 * 175.14496 * 6 4 2 9 9 H 1.48503 * 109.47117 * 59.99797 * 8 6 4 10 10 H 1.48499 * 109.47035 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47131 * 299.99634 * 8 6 4 12 12 N 1.46495 * 109.47535 * 239.99985 * 2 1 3 13 13 C 1.46504 * 119.99653 * 300.00155 * 12 2 1 14 14 C 1.34773 * 120.00352 * 119.99736 * 12 2 1 15 15 O 1.21281 * 119.99795 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00234 * 180.02562 * 14 12 2 17 17 H 1.09005 * 109.08528 * 300.70316 * 16 14 12 18 18 C 1.50865 * 109.10609 * 59.80491 * 16 14 12 19 19 H 1.08001 * 127.53758 * 300.53244 * 18 16 14 20 20 S 1.76979 * 104.91388 * 120.50753 * 18 16 14 21 21 C 1.76453 * 96.89679 * 0.02562 * 20 18 16 22 22 C 1.30682 * 109.77024 * 359.93720 * 21 20 18 23 23 H 1.09001 * 109.46700 * 55.10244 * 1 2 3 24 24 H 1.08999 * 109.46744 * 175.10147 * 1 2 3 25 25 H 1.08994 * 109.47424 * 295.10434 * 1 2 3 26 26 H 0.97000 * 119.99887 * 4.88135 * 7 6 4 27 27 H 1.08996 * 109.47366 * 89.99972 * 13 12 2 28 28 H 1.09000 * 109.46815 * 209.99780 * 13 12 2 29 29 H 1.08992 * 109.47232 * 329.99613 * 13 12 2 30 30 H 1.07997 * 125.09268 * 180.02562 * 21 20 18 31 31 H 1.07998 * 121.38265 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.2927 -1.7573 1.1812 6 6 2.1595 -0.0236 2.4194 7 7 1.9289 1.2705 2.4591 8 14 2.6517 -0.9329 3.9751 9 1 3.9824 -1.5626 3.7804 10 1 2.7187 0.0248 5.1080 11 1 1.6457 -1.9837 4.2736 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7933 -0.0356 -2.0833 15 8 3.0866 1.1254 -1.8911 16 6 3.2952 -0.7459 -3.3140 17 1 3.8891 -1.6081 -3.0106 18 6 2.1156 -1.2200 -4.1261 19 1 1.3321 -1.8956 -3.8161 20 16 2.2960 -0.4263 -5.6976 21 6 3.7831 0.4471 -5.3244 22 6 4.1540 0.1850 -4.0990 23 1 -0.3633 0.5880 -0.8429 24 1 -0.3633 -1.0239 -0.0878 25 1 -0.3634 0.4360 0.9305 26 1 1.6013 1.7292 1.6698 27 1 0.7377 -2.1444 -1.9992 28 1 2.4630 -2.5819 -1.9862 29 1 1.5296 -2.5968 -0.4708 30 1 4.3068 1.1010 -6.0059 31 1 5.0450 0.6239 -3.6751 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725630962.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:36 Heat of formation + Delta-G solvation = -71.897313 kcal Electronic energy + Delta-G solvation = -15353.152604 eV Core-core repulsion = 12837.670498 eV Total energy + Delta-G solvation = -2515.482106 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.080 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.55650 -37.26760 -35.91148 -34.72730 -31.55637 -29.08297 -27.53186 -26.84731 -24.00925 -23.09089 -20.87826 -19.35530 -18.63252 -17.76049 -17.21243 -16.36453 -15.89703 -15.52419 -15.18192 -14.58831 -14.32986 -13.84963 -13.54157 -13.29940 -13.12729 -12.91730 -12.56851 -12.50735 -12.05510 -12.03810 -11.90254 -11.82134 -11.47261 -10.85919 -10.56922 -10.48614 -10.01954 -9.09535 -8.65747 -8.61928 -6.34109 -5.70157 1.38279 1.50762 1.66400 1.78795 1.85947 2.25503 2.61805 2.79319 3.20772 3.24253 4.30718 4.42953 4.52492 4.59319 4.69303 4.72791 4.79390 4.86084 4.93806 5.11187 5.18710 5.35399 5.49033 5.85806 5.96789 6.00128 6.22900 6.35313 6.51656 6.69048 7.06826 7.49017 7.80952 8.71657 Molecular weight = 240.08amu Principal moments of inertia in cm(-1) A = 0.044225 B = 0.006337 C = 0.006178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.975699 B = 4417.489462 C = 4530.858703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.233 3.767 3 H 0.006 0.994 4 C -0.611 4.611 5 H 0.054 0.946 6 C -0.038 4.038 7 N -0.931 5.931 8 Si 1.136 2.864 9 H -0.277 1.277 10 H -0.273 1.273 11 H -0.256 1.256 12 N -0.599 5.599 13 C 0.121 3.879 14 C 0.491 3.509 15 O -0.637 6.637 16 C 0.078 3.922 17 H -0.001 1.001 18 C -0.801 4.801 19 H 0.095 0.905 20 S -0.138 6.138 21 C -0.151 4.151 22 C -0.194 4.194 23 H 0.015 0.985 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.249 0.751 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.175 0.825 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.766 -5.846 0.336 5.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.130 3.870 3 H 0.024 0.976 4 C -0.649 4.649 5 H 0.072 0.928 6 C -0.235 4.235 7 N -0.568 5.568 8 Si 0.954 3.046 9 H -0.203 1.203 10 H -0.198 1.198 11 H -0.181 1.181 12 N -0.328 5.328 13 C -0.022 4.022 14 C 0.283 3.717 15 O -0.524 6.524 16 C 0.055 3.945 17 H 0.017 0.983 18 C -0.930 4.930 19 H 0.113 0.887 20 S 0.107 5.893 21 C -0.283 4.283 22 C -0.228 4.228 23 H 0.034 0.966 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.192 0.808 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.422 -5.167 0.915 5.264 hybrid contribution 0.220 0.293 -0.540 0.653 sum 0.642 -4.874 0.375 4.930 Atomic orbital electron populations 1.21896 0.97619 1.00248 0.98349 1.18832 0.91415 0.92978 0.83762 0.97594 1.22412 1.48545 0.98325 0.95604 0.92789 1.27885 0.93794 0.95961 1.05815 1.70835 1.44132 1.09380 1.32473 0.82799 0.77126 0.74229 0.70470 1.20275 1.19772 1.18052 1.47998 1.50142 1.12718 1.21935 1.21386 0.99541 0.81618 0.99695 1.23263 0.77300 0.87140 0.83965 1.90347 1.62881 1.20651 1.78496 1.17755 0.94191 0.92019 0.90510 0.98347 1.24436 1.22009 1.49356 0.97238 0.88735 1.81569 1.28316 1.53973 1.25402 1.24844 1.00190 1.03766 0.99525 1.22202 1.01448 1.03216 0.95979 0.96600 0.92410 0.93198 0.94141 0.94370 0.92221 0.91420 0.80797 0.87379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -9.58 9.25 71.98 0.67 -8.92 16 2 C 0.23 20.17 2.36 44.25 0.10 20.27 16 3 H 0.01 0.59 5.44 -2.39 -0.01 0.57 16 4 C -0.61 -51.45 8.13 25.60 0.21 -51.24 16 5 H 0.05 4.44 6.66 -2.91 -0.02 4.42 16 6 C -0.04 -3.10 5.46 84.66 0.46 -2.64 16 7 N -0.93 -79.78 13.63 21.45 0.29 -79.48 16 8 Si 1.14 71.76 29.91 68.60 2.05 73.81 16 9 H -0.28 -16.86 7.11 99.48 0.71 -16.16 16 10 H -0.27 -16.58 7.11 99.48 0.71 -15.87 16 11 H -0.26 -14.76 7.11 99.48 0.71 -14.06 16 12 N -0.60 -51.44 2.75 -826.81 -2.28 -53.71 16 13 C 0.12 9.20 7.86 127.77 1.00 10.21 16 14 C 0.49 44.57 7.04 87.66 0.62 45.19 16 15 O -0.64 -61.68 15.34 -3.03 -0.05 -61.72 16 16 C 0.08 6.65 2.27 -13.50 -0.03 6.62 16 17 H 0.00 -0.05 7.35 -2.38 -0.02 -0.07 16 18 C -0.80 -68.83 10.19 71.29 0.73 -68.11 16 19 H 0.09 8.27 6.12 -2.91 -0.02 8.25 16 20 S -0.14 -10.67 22.98 -56.49 -1.30 -11.97 16 21 C -0.15 -11.04 11.13 68.11 0.76 -10.28 16 22 C -0.19 -15.39 8.78 25.45 0.22 -15.16 16 23 H 0.01 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.06 4.20 7.51 -2.39 -0.02 4.18 16 25 H 0.05 3.80 8.14 -2.39 -0.02 3.78 16 26 H 0.25 22.42 6.66 -92.71 -0.62 21.80 16 27 H 0.04 2.85 7.05 -2.39 -0.02 2.83 16 28 H 0.06 4.51 6.11 -2.39 -0.01 4.50 16 29 H 0.07 4.83 6.63 -2.39 -0.02 4.82 16 30 H 0.17 10.75 8.06 -2.91 -0.02 10.72 16 31 H 0.11 8.21 8.06 -2.91 -0.02 8.19 16 Total: -2.00 -182.81 270.31 4.75 -178.06 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 1.28 Total: 29.07 kcal Atomic # 6 Polarization: -78.79 SS G_CDS: 4.74 Total: -74.05 kcal Atomic # 7 Polarization: -131.21 SS G_CDS: -1.98 Total: -133.20 kcal Atomic # 8 Polarization: -61.68 SS G_CDS: -0.05 Total: -61.72 kcal Atomic # 14 Polarization: 71.76 SS G_CDS: 2.05 Total: 73.81 kcal Atomic # 16 Polarization: -10.67 SS G_CDS: -1.30 Total: -11.97 kcal Total: -182.81 4.75 -178.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725630962.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.164 kcal (2) G-P(sol) polarization free energy of solvation -182.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -178.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds