Wall clock time and date at job start Mon Mar 30 2020 04:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47354 * 2 1 4 4 C 1.52998 * 109.47046 * 120.00236 * 2 1 3 5 5 C 1.54785 * 111.22593 * 296.22515 * 4 2 1 6 6 C 1.49614 * 109.53556 * 216.26676 * 5 4 2 7 7 C 1.31319 * 118.46732 * 18.96457 * 6 5 4 8 8 S 1.77559 * 108.13489 * 359.79596 * 7 6 5 9 9 N 1.46507 * 109.46919 * 240.00068 * 2 1 3 10 10 C 1.46498 * 119.99540 * 300.00321 * 9 2 1 11 11 C 1.34770 * 120.00151 * 120.00243 * 9 2 1 12 12 O 1.21686 * 119.99828 * 359.97438 * 11 9 2 13 13 C 1.46371 * 119.99876 * 180.02562 * 11 9 2 14 14 H 1.07994 * 120.00575 * 359.97438 * 13 11 9 15 15 C 1.40054 * 119.99658 * 179.97438 * 13 11 9 16 16 N 1.30675 * 120.00173 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 119.99687 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47198 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47112 * 120.00015 * 17 15 13 20 20 H 1.48502 * 109.47026 * 239.99916 * 17 15 13 21 21 H 1.08997 * 109.46741 * 300.00467 * 1 2 3 22 22 H 1.09004 * 109.46949 * 59.99795 * 1 2 3 23 23 H 1.08995 * 109.47354 * 180.02562 * 1 2 3 24 24 H 1.09002 * 111.07628 * 60.69688 * 4 2 1 25 25 H 1.08997 * 109.47206 * 336.30539 * 5 4 2 26 26 H 1.09006 * 109.46427 * 96.28541 * 5 4 2 27 27 H 1.08002 * 120.76478 * 198.97436 * 6 5 4 28 28 H 1.07997 * 125.93180 * 179.76796 * 7 6 5 29 29 H 1.08994 * 109.47728 * 90.00455 * 10 9 2 30 30 H 1.09003 * 109.46722 * 210.00242 * 10 9 2 31 31 H 1.08998 * 109.47594 * 329.99694 * 10 9 2 32 32 H 0.96999 * 119.99663 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6257 0.0291 2.5380 6 6 2.7219 -0.0734 3.5510 7 6 3.9279 -0.3895 3.1385 8 16 3.8680 -0.6170 1.3785 9 7 2.0184 -0.6906 -1.1962 10 6 1.6643 -2.0932 -1.4280 11 6 2.7932 -0.0357 -2.0834 12 8 3.0868 1.1294 -1.8910 13 6 3.2806 -0.7256 -3.2788 14 1 3.0196 -1.7595 -3.4498 15 6 4.0853 -0.0448 -4.2009 16 7 4.4007 1.2064 -3.9944 17 14 4.7079 -0.9255 -5.7262 18 1 4.2139 -2.3259 -5.7256 19 1 4.2124 -0.2258 -6.9387 20 1 6.1929 -0.9250 -5.7265 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.7014 -1.7572 1.2694 25 1 1.4434 1.0782 2.3049 26 1 0.7164 -0.4165 2.9414 27 1 2.5259 0.1081 4.5975 28 1 4.8040 -0.4927 3.7614 29 1 0.7375 -2.1444 -1.9994 30 1 2.4628 -2.5819 -1.9864 31 1 1.5294 -2.5969 -0.4709 32 1 4.9578 1.6779 -4.6333 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725631029.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:05 Heat of formation + Delta-G solvation = -14.437131 kcal Electronic energy + Delta-G solvation = -15597.572665 eV Core-core repulsion = 13070.926481 eV Total energy + Delta-G solvation = -2526.646185 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.30491 -36.38402 -34.32730 -32.40223 -31.31818 -28.08438 -26.20715 -25.69254 -24.46896 -21.33542 -19.34589 -18.78608 -17.01041 -16.43419 -15.70638 -15.06773 -14.55641 -14.15261 -13.93091 -13.48286 -13.04782 -12.47387 -12.27315 -12.14033 -11.82233 -11.51948 -11.41383 -11.33975 -11.08611 -10.93818 -10.86763 -10.37761 -10.22036 -10.16675 -10.06523 -9.37566 -8.82063 -7.52364 -7.28319 -6.98466 -6.14875 -4.59742 1.98576 2.16723 2.81851 3.15339 3.23503 3.27575 4.09643 4.43507 4.59934 4.90954 4.95656 5.11460 5.41867 5.58112 5.72554 5.75633 5.79014 5.86018 5.92899 6.07217 6.10131 6.21847 6.38879 6.52095 6.56745 6.60937 6.65758 7.48973 7.65006 8.17308 8.38381 9.06927 9.45860 10.62384 10.81382 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.034166 B = 0.007351 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.330190 B = 3807.894321 C = 4095.857046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.104 0.896 4 C -0.062 4.062 5 C -0.093 4.093 6 C -0.190 4.190 7 C -0.144 4.144 8 S -0.140 6.140 9 N -0.640 5.640 10 C 0.101 3.899 11 C 0.560 3.440 12 O -0.571 6.571 13 C -0.542 4.542 14 H 0.072 0.928 15 C 0.088 3.912 16 N -0.766 5.766 17 Si 0.905 3.095 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.276 1.276 21 H 0.055 0.945 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.125 0.875 28 H 0.156 0.844 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.612 -5.261 10.650 13.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.055 3.945 3 H 0.122 0.878 4 C -0.193 4.193 5 C -0.132 4.132 6 C -0.220 4.220 7 C -0.276 4.276 8 S 0.101 5.899 9 N -0.378 5.378 10 C -0.043 4.043 11 C 0.366 3.634 12 O -0.453 6.453 13 C -0.578 4.578 14 H 0.090 0.910 15 C -0.132 4.132 16 N -0.395 5.395 17 Si 0.729 3.271 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.202 1.202 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.115 0.885 25 H 0.109 0.891 26 H 0.100 0.900 27 H 0.142 0.858 28 H 0.173 0.827 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.369 -4.548 9.731 11.596 hybrid contribution -0.592 -0.559 0.364 0.892 sum -4.961 -5.107 10.095 12.354 Atomic orbital electron populations 1.22137 0.95759 1.01570 1.01800 1.20512 0.92654 0.98287 0.83063 0.87783 1.24777 0.92953 1.03084 0.98444 1.21182 0.98204 1.01994 0.91823 1.22909 0.94336 1.04425 1.00343 1.25290 1.00265 1.03281 0.98729 1.87286 1.10030 1.90475 1.02086 1.48025 1.55676 1.11341 1.22792 1.21360 1.00009 0.83992 0.98964 1.18224 0.76846 0.86040 0.82293 1.90594 1.60352 1.17372 1.76980 1.21017 1.32876 0.98636 1.05299 0.91035 1.25725 0.94567 0.94427 0.98488 1.70035 1.27305 1.09137 1.32992 0.86365 0.78877 0.80305 0.81518 1.18782 1.20214 1.20183 0.92564 0.91879 0.92905 0.88520 0.89128 0.89985 0.85754 0.82656 0.95044 0.90943 0.94263 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.02 37.16 0.34 -1.98 16 2 C 0.16 3.09 2.13 -67.92 -0.14 2.94 16 3 H 0.10 2.35 6.88 -51.93 -0.36 2.00 16 4 C -0.06 -1.02 2.83 -25.79 -0.07 -1.09 16 5 C -0.09 -1.23 5.05 -27.46 -0.14 -1.37 16 6 C -0.19 -2.45 10.24 -36.63 -0.37 -2.82 16 7 C -0.14 -2.11 11.31 28.93 0.33 -1.78 16 8 S -0.14 -2.68 22.43 -107.50 -2.41 -5.10 16 9 N -0.64 -14.40 2.57 -175.60 -0.45 -14.85 16 10 C 0.10 1.89 9.21 59.85 0.55 2.44 16 11 C 0.56 15.90 7.61 -12.99 -0.10 15.80 16 12 O -0.57 -18.41 14.35 5.20 0.07 -18.34 16 13 C -0.54 -15.34 8.74 -35.63 -0.31 -15.66 16 14 H 0.07 1.87 6.00 -52.49 -0.31 1.55 16 15 C 0.09 2.47 5.50 -17.36 -0.10 2.37 16 16 N -0.77 -23.16 11.83 55.55 0.66 -22.51 16 17 Si 0.90 20.38 29.56 -169.99 -5.02 15.35 16 18 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H 0.06 0.70 7.41 -51.93 -0.38 0.32 16 22 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.05 0.72 7.67 -51.93 -0.40 0.32 16 24 H 0.10 1.47 6.74 -51.93 -0.35 1.12 16 25 H 0.09 1.22 7.81 -51.93 -0.41 0.81 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 28 H 0.16 1.88 8.06 -52.49 -0.42 1.45 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 1.43 6.09 -51.93 -0.32 1.11 16 31 H 0.04 0.61 6.46 -51.93 -0.34 0.28 16 32 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 LS Contribution 277.58 15.07 4.18 4.18 Total: -1.00 -34.05 277.58 -7.11 -41.16 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -4.11 Total: 1.24 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -0.02 Total: -1.15 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.21 Total: -37.35 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.07 Total: -18.34 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -2.41 Total: -5.10 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -34.05 -7.11 -41.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725631029.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.721 kcal (2) G-P(sol) polarization free energy of solvation -34.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds