Wall clock time and date at job start Mon Mar 30 2020 04:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47354 * 2 1 4 4 C 1.52998 * 109.47046 * 120.00236 * 2 1 3 5 5 C 1.54785 * 111.22593 * 296.22515 * 4 2 1 6 6 C 1.49614 * 109.53556 * 216.26676 * 5 4 2 7 7 C 1.31319 * 118.46732 * 18.96457 * 6 5 4 8 8 S 1.77559 * 108.13489 * 359.79596 * 7 6 5 9 9 N 1.46507 * 109.46919 * 240.00068 * 2 1 3 10 10 C 1.46498 * 119.99540 * 300.00321 * 9 2 1 11 11 C 1.34770 * 120.00151 * 120.00243 * 9 2 1 12 12 O 1.21686 * 119.99828 * 359.97438 * 11 9 2 13 13 C 1.46371 * 119.99876 * 180.02562 * 11 9 2 14 14 H 1.07994 * 120.00575 * 359.97438 * 13 11 9 15 15 C 1.40054 * 119.99658 * 179.97438 * 13 11 9 16 16 N 1.30675 * 120.00173 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 119.99687 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47198 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47112 * 120.00015 * 17 15 13 20 20 H 1.48502 * 109.47026 * 239.99916 * 17 15 13 21 21 H 1.08997 * 109.46741 * 300.00467 * 1 2 3 22 22 H 1.09004 * 109.46949 * 59.99795 * 1 2 3 23 23 H 1.08995 * 109.47354 * 180.02562 * 1 2 3 24 24 H 1.09002 * 111.07628 * 60.69688 * 4 2 1 25 25 H 1.08997 * 109.47206 * 336.30539 * 5 4 2 26 26 H 1.09006 * 109.46427 * 96.28541 * 5 4 2 27 27 H 1.08002 * 120.76478 * 198.97436 * 6 5 4 28 28 H 1.07997 * 125.93180 * 179.76796 * 7 6 5 29 29 H 1.08994 * 109.47728 * 90.00455 * 10 9 2 30 30 H 1.09003 * 109.46722 * 210.00242 * 10 9 2 31 31 H 1.08998 * 109.47594 * 329.99694 * 10 9 2 32 32 H 0.96999 * 119.99663 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6257 0.0291 2.5380 6 6 2.7219 -0.0734 3.5510 7 6 3.9279 -0.3895 3.1385 8 16 3.8680 -0.6170 1.3785 9 7 2.0184 -0.6906 -1.1962 10 6 1.6643 -2.0932 -1.4280 11 6 2.7932 -0.0357 -2.0834 12 8 3.0868 1.1294 -1.8910 13 6 3.2806 -0.7256 -3.2788 14 1 3.0196 -1.7595 -3.4498 15 6 4.0853 -0.0448 -4.2009 16 7 4.4007 1.2064 -3.9944 17 14 4.7079 -0.9255 -5.7262 18 1 4.2139 -2.3259 -5.7256 19 1 4.2124 -0.2258 -6.9387 20 1 6.1929 -0.9250 -5.7265 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.7014 -1.7572 1.2694 25 1 1.4434 1.0782 2.3049 26 1 0.7164 -0.4165 2.9414 27 1 2.5259 0.1081 4.5975 28 1 4.8040 -0.4927 3.7614 29 1 0.7375 -2.1444 -1.9994 30 1 2.4628 -2.5819 -1.9864 31 1 1.5294 -2.5969 -0.4709 32 1 4.9578 1.6779 -4.6333 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725631029.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:05 Heat of formation + Delta-G solvation = -37.425383 kcal Electronic energy + Delta-G solvation = -15598.569511 eV Core-core repulsion = 13070.926481 eV Total energy + Delta-G solvation = -2527.643030 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.05020 -37.86735 -36.01113 -34.57211 -32.85281 -29.32821 -28.23019 -27.31181 -25.77453 -22.98063 -20.79448 -20.24983 -18.52516 -18.15879 -17.69246 -16.74182 -15.91144 -15.87566 -15.44642 -14.92885 -14.56371 -14.19991 -13.56167 -13.50524 -13.24137 -13.18645 -13.07297 -12.81932 -12.74993 -12.45921 -12.37963 -12.18377 -11.98457 -11.75341 -11.33033 -10.93267 -10.66960 -9.71825 -9.07863 -8.42811 -8.25973 -6.80828 0.77379 1.04633 1.37905 1.38630 1.55675 1.60257 2.23677 2.50091 2.82545 3.56435 3.73013 3.75859 3.97328 4.18199 4.36845 4.48135 4.52554 4.70008 4.75664 4.81193 4.87431 4.94277 5.01623 5.11126 5.25215 5.32155 5.38704 5.47053 5.81450 6.17009 6.46057 6.90720 7.46068 8.52843 8.72067 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.034166 B = 0.007351 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.330190 B = 3807.894321 C = 4095.857046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.158 3.842 3 H 0.057 0.943 4 C -0.037 4.037 5 C -0.095 4.095 6 C -0.163 4.163 7 C -0.150 4.150 8 S -0.271 6.271 9 N -0.642 5.642 10 C 0.100 3.900 11 C 0.546 3.454 12 O -0.626 6.626 13 C -0.570 4.570 14 H 0.089 0.911 15 C 0.028 3.972 16 N -0.822 5.822 17 Si 0.992 3.008 18 H -0.246 1.246 19 H -0.267 1.267 20 H -0.272 1.272 21 H 0.090 0.910 22 H 0.041 0.959 23 H 0.077 0.923 24 H 0.115 0.885 25 H 0.088 0.912 26 H 0.125 0.875 27 H 0.168 0.832 28 H 0.177 0.823 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.448 -7.206 12.115 15.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.052 3.948 3 H 0.075 0.925 4 C -0.166 4.166 5 C -0.133 4.133 6 C -0.192 4.192 7 C -0.280 4.280 8 S -0.032 6.032 9 N -0.378 5.378 10 C -0.043 4.043 11 C 0.352 3.648 12 O -0.512 6.512 13 C -0.607 4.607 14 H 0.107 0.893 15 C -0.187 4.187 16 N -0.452 5.452 17 Si 0.812 3.188 18 H -0.169 1.169 19 H -0.192 1.192 20 H -0.197 1.197 21 H 0.109 0.891 22 H 0.060 0.940 23 H 0.096 0.904 24 H 0.133 0.867 25 H 0.106 0.894 26 H 0.144 0.856 27 H 0.185 0.815 28 H 0.194 0.806 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.259 -6.537 11.253 14.440 hybrid contribution -0.097 0.059 0.047 0.123 sum -6.356 -6.477 11.299 14.492 Atomic orbital electron populations 1.22054 0.92146 1.03396 1.02532 1.20652 0.95199 0.95896 0.83077 0.92483 1.24694 0.89331 1.03988 0.98613 1.21321 1.00010 1.01746 0.90266 1.23305 0.93104 1.00723 1.02020 1.25299 1.02138 1.06086 0.94456 1.87710 1.14950 1.91849 1.08713 1.47816 1.54440 1.12673 1.22844 1.21501 1.00006 0.81809 1.01007 1.18508 0.77268 0.85631 0.83389 1.90540 1.62505 1.19685 1.78480 1.21553 1.33482 0.99619 1.06007 0.89320 1.26966 0.94237 0.95082 1.02380 1.70215 1.28585 1.11513 1.34886 0.85055 0.78107 0.79478 0.76178 1.16889 1.19213 1.19675 0.89106 0.93976 0.90376 0.86689 0.89371 0.85649 0.81498 0.80594 0.93330 0.92509 0.90756 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 9.02 71.98 0.65 -3.32 16 2 C 0.16 6.01 2.13 44.99 0.10 6.11 16 3 H 0.06 2.72 6.88 -2.39 -0.02 2.71 16 4 C -0.04 -1.15 2.83 31.20 0.09 -1.06 16 5 C -0.09 -2.15 5.05 30.12 0.15 -2.00 16 6 C -0.16 -3.57 10.24 25.00 0.26 -3.31 16 7 C -0.15 -4.12 11.31 67.47 0.76 -3.36 16 8 S -0.27 -10.69 22.43 -56.49 -1.27 -11.95 16 9 N -0.64 -29.31 2.57 -827.70 -2.13 -31.43 16 10 C 0.10 3.61 9.21 127.77 1.18 4.78 16 11 C 0.55 32.47 7.61 86.36 0.66 33.13 16 12 O -0.63 -43.03 14.35 -4.30 -0.06 -43.09 16 13 C -0.57 -33.26 8.74 24.83 0.22 -33.04 16 14 H 0.09 4.67 6.00 -2.91 -0.02 4.65 16 15 C 0.03 1.61 5.50 85.31 0.47 2.08 16 16 N -0.82 -52.09 11.83 21.84 0.26 -51.83 16 17 Si 0.99 42.51 29.56 68.60 2.03 44.54 16 18 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 21 H 0.09 1.92 7.41 -2.39 -0.02 1.90 16 22 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 23 H 0.08 1.81 7.67 -2.39 -0.02 1.79 16 24 H 0.12 3.12 6.74 -2.39 -0.02 3.10 16 25 H 0.09 2.13 7.81 -2.39 -0.02 2.11 16 26 H 0.13 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 28 H 0.18 3.96 8.06 -2.91 -0.02 3.94 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 2.22 6.09 -2.39 -0.01 2.21 16 31 H 0.07 2.13 6.46 -2.39 -0.02 2.12 16 32 H 0.27 15.62 8.29 -92.71 -0.77 14.85 16 Total: -1.00 -81.58 277.58 4.47 -77.11 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 1.11 Total: 16.64 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 4.52 Total: 0.02 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -1.87 Total: -83.26 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -0.06 Total: -43.09 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: -10.69 SS G_CDS: -1.27 Total: -11.95 kcal Total: -81.58 4.47 -77.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725631029.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.688 kcal (2) G-P(sol) polarization free energy of solvation -81.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds