Wall clock time and date at job start Mon Mar 30 2020 04:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46899 * 2 1 4 4 N 1.46502 * 109.47049 * 119.99714 * 2 1 3 5 5 C 1.37097 * 120.00287 * 305.42380 * 4 2 1 6 6 H 1.08000 * 120.00060 * 316.11161 * 5 4 2 7 7 C 1.38951 * 120.00058 * 136.10808 * 5 4 2 8 8 N 1.31410 * 119.99562 * 341.20759 * 7 5 4 9 9 Si 1.86793 * 120.00260 * 161.21152 * 7 5 4 10 10 H 1.48504 * 109.47245 * 60.00156 * 9 7 5 11 11 H 1.48498 * 109.47141 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46979 * 300.00248 * 9 7 5 13 13 C 1.34774 * 119.99728 * 125.42794 * 4 2 1 14 14 O 1.21295 * 120.00000 * 186.06628 * 13 4 2 15 15 C 1.50696 * 120.00011 * 6.06486 * 13 4 2 16 16 H 1.09002 * 109.08511 * 35.68789 * 15 13 4 17 17 C 1.50868 * 109.01980 * 276.63507 * 15 13 4 18 18 H 1.08000 * 127.53838 * 59.59533 * 17 15 13 19 19 S 1.76975 * 104.91642 * 239.54580 * 17 15 13 20 20 C 1.76456 * 96.89632 * 0.02562 * 19 17 15 21 21 C 1.30887 * 109.81617 * 359.97438 * 20 19 17 22 22 H 1.09006 * 109.47017 * 305.57522 * 1 2 3 23 23 H 1.08996 * 109.47333 * 65.57901 * 1 2 3 24 24 H 1.09001 * 109.47137 * 185.58389 * 1 2 3 25 25 H 1.09000 * 109.47014 * 239.99990 * 2 1 3 26 26 H 1.08997 * 109.47202 * 182.72514 * 3 2 1 27 27 H 1.08999 * 109.47109 * 302.72642 * 3 2 1 28 28 H 1.08997 * 109.47232 * 62.72092 * 3 2 1 29 29 H 0.97009 * 119.99614 * 179.97438 * 8 7 5 30 30 H 1.08000 * 125.09464 * 179.97438 * 20 19 17 31 31 H 1.07994 * 121.51324 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.5981 -0.2905 2.4383 6 1 1.5519 0.7611 2.6800 7 6 1.2314 -1.2380 3.3863 8 7 0.9295 -2.4605 3.0106 9 14 1.1675 -0.7739 5.1945 10 1 0.1886 0.3257 5.3892 11 1 0.7510 -1.9540 5.9940 12 1 2.5116 -0.3243 5.6379 13 6 2.8809 -1.7191 1.0756 14 8 3.1998 -2.3611 2.0540 15 6 3.4490 -2.0716 -0.2749 16 1 3.6072 -1.1561 -0.8450 17 6 2.4638 -2.9467 -1.0096 18 1 1.4465 -2.7072 -1.2821 19 16 3.3400 -4.4509 -1.3284 20 6 4.8595 -3.9764 -0.5672 21 6 4.7560 -2.7626 -0.0886 22 1 -0.3633 0.5979 0.8359 23 1 -0.3634 0.4249 -0.9357 24 1 -0.3633 -1.0228 0.1000 25 1 1.8933 -0.5138 -0.8900 26 1 3.1289 1.4430 -0.0489 27 1 1.6373 1.9703 -0.8645 28 1 1.7170 1.9421 0.9133 29 1 0.6738 -3.1221 3.6724 30 1 5.7428 -4.5948 -0.5054 31 1 5.5802 -2.2837 0.4191 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725631039.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:59 Heat of formation + Delta-G solvation = 28.745743 kcal Electronic energy + Delta-G solvation = -15802.293455 eV Core-core repulsion = 13291.175559 eV Total energy + Delta-G solvation = -2511.117896 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.080 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -36.48950 -33.40734 -32.10727 -30.47343 -28.06355 -25.95496 -24.88963 -22.85382 -20.01484 -18.77677 -18.00174 -15.97609 -14.17901 -13.75991 -13.60043 -13.08581 -12.26469 -11.85853 -11.54683 -11.23035 -10.72598 -10.26193 -10.10595 -9.86357 -9.71387 -9.46015 -9.29150 -8.95716 -8.79807 -8.68543 -8.66910 -8.17043 -7.99728 -7.61514 -7.09874 -6.69138 -5.73086 -5.16122 -4.94879 -4.36357 -2.15487 -1.72290 4.37427 4.46063 4.51197 4.93946 5.34805 5.74704 6.66623 6.91579 6.96611 7.10226 7.33948 7.61558 7.62500 7.71758 7.92589 7.98695 8.08230 8.15114 8.20362 8.65855 8.72320 8.85265 9.03149 9.17042 9.17359 9.51185 9.98077 10.20833 10.66271 10.87795 11.28131 11.70834 12.53583 12.73053 Molecular weight = 240.08amu Principal moments of inertia in cm(-1) A = 0.024396 B = 0.010128 C = 0.008357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.446167 B = 2764.050308 C = 3349.502322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.129 3.871 3 C -0.149 4.149 4 N -0.473 5.473 5 C -0.335 4.335 6 H 0.058 0.942 7 C 0.066 3.934 8 N -0.814 5.814 9 Si 0.885 3.115 10 H -0.288 1.288 11 H -0.295 1.295 12 H -0.283 1.283 13 C 0.498 3.502 14 O -0.561 6.561 15 C 0.081 3.919 16 H -0.012 1.012 17 C -0.758 4.758 18 H 0.095 0.905 19 S -0.160 6.160 20 C -0.178 4.178 21 C -0.159 4.159 22 H 0.047 0.953 23 H 0.026 0.974 24 H 0.054 0.946 25 H 0.087 0.913 26 H 0.042 0.958 27 H 0.036 0.964 28 H 0.048 0.952 29 H 0.248 0.752 30 H 0.113 0.887 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.938 6.703 -1.421 6.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.023 3.977 3 C -0.208 4.208 4 N -0.197 5.197 5 C -0.464 4.464 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.448 5.448 9 Si 0.714 3.286 10 H -0.214 1.214 11 H -0.221 1.221 12 H -0.210 1.210 13 C 0.288 3.712 14 O -0.439 6.439 15 C 0.058 3.942 16 H 0.006 0.994 17 C -0.887 4.887 18 H 0.113 0.887 19 S 0.086 5.914 20 C -0.310 4.310 21 C -0.195 4.195 22 H 0.066 0.934 23 H 0.045 0.955 24 H 0.073 0.927 25 H 0.105 0.895 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.131 0.869 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.592 5.019 -1.498 5.271 hybrid contribution 0.197 1.407 2.018 2.468 sum 0.789 6.425 0.520 6.494 Atomic orbital electron populations 1.21847 0.97569 1.01735 0.97920 1.20874 0.92915 0.91498 0.92440 1.22105 1.00130 0.99026 0.99515 1.43411 1.41411 1.32254 1.02668 1.18655 1.46442 0.91346 0.89926 0.92467 1.25182 0.95785 0.95593 0.97659 1.70048 1.39744 1.02910 1.32109 0.86698 0.77389 0.76531 0.87971 1.21445 1.22085 1.20954 1.21879 0.78821 0.79474 0.90996 1.90300 1.62278 1.50101 1.41264 1.17658 0.89906 0.95496 0.91177 0.99449 1.23941 1.03518 0.97103 1.64096 0.88741 1.81601 1.08703 1.32452 1.68686 1.24226 0.99960 0.99245 1.07586 1.22184 0.98387 0.96658 1.02224 0.93436 0.95520 0.92664 0.89509 0.93928 0.94542 0.93265 0.94143 0.86929 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.97 8.97 37.16 0.33 -4.63 16 2 C 0.13 5.15 2.88 -67.93 -0.20 4.95 16 3 C -0.15 -5.16 9.28 37.16 0.34 -4.82 16 4 N -0.47 -21.45 2.44 -107.73 -0.26 -21.71 16 5 C -0.34 -15.11 7.92 -14.93 -0.12 -15.22 16 6 H 0.06 2.47 7.08 -52.49 -0.37 2.10 16 7 C 0.07 2.99 4.38 -17.47 -0.08 2.91 16 8 N -0.81 -39.05 11.54 55.50 0.64 -38.41 16 9 Si 0.88 33.90 29.59 -169.99 -5.03 28.87 16 10 H -0.29 -10.38 7.11 56.52 0.40 -9.98 16 11 H -0.29 -11.07 7.11 56.52 0.40 -10.66 16 12 H -0.28 -10.81 7.11 56.52 0.40 -10.41 16 13 C 0.50 24.18 6.14 -10.99 -0.07 24.11 16 14 O -0.56 -29.05 13.65 5.54 0.08 -28.98 16 15 C 0.08 3.75 2.22 -94.80 -0.21 3.54 16 16 H -0.01 -0.53 6.76 -51.93 -0.35 -0.88 16 17 C -0.76 -36.50 10.59 36.09 0.38 -36.12 16 18 H 0.09 4.73 7.93 -52.49 -0.42 4.31 16 19 S -0.16 -7.04 22.98 -107.50 -2.47 -9.51 16 20 C -0.18 -7.43 11.14 29.05 0.32 -7.10 16 21 C -0.16 -6.95 8.94 -36.80 -0.33 -7.28 16 22 H 0.05 1.73 7.75 -51.93 -0.40 1.33 16 23 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.05 2.25 8.14 -51.93 -0.42 1.82 16 25 H 0.09 3.66 4.96 -51.93 -0.26 3.40 16 26 H 0.04 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.05 1.67 7.15 -51.93 -0.37 1.30 16 29 H 0.25 11.38 8.31 -40.82 -0.34 11.04 16 30 H 0.11 4.16 8.06 -52.49 -0.42 3.74 16 31 H 0.09 3.50 8.06 -52.49 -0.42 3.08 16 LS Contribution 272.61 15.07 4.11 4.11 Total: -2.00 -96.58 272.61 -6.39 -102.98 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -3.84 Total: 2.32 kcal Atomic # 6 Polarization: -40.04 SS G_CDS: 0.39 Total: -39.66 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.38 Total: -60.12 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: 0.08 Total: -28.98 kcal Atomic # 14 Polarization: 33.90 SS G_CDS: -5.03 Total: 28.87 kcal Atomic # 16 Polarization: -7.04 SS G_CDS: -2.47 Total: -9.51 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -96.58 -6.39 -102.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725631039.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.723 kcal (2) G-P(sol) polarization free energy of solvation -96.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds