Wall clock time and date at job start Mon Mar 30 2020 04:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46899 * 2 1 4 4 N 1.46502 * 109.47049 * 119.99714 * 2 1 3 5 5 C 1.37097 * 120.00287 * 305.42380 * 4 2 1 6 6 H 1.08000 * 120.00060 * 316.11161 * 5 4 2 7 7 C 1.38951 * 120.00058 * 136.10808 * 5 4 2 8 8 N 1.31410 * 119.99562 * 341.20759 * 7 5 4 9 9 Si 1.86793 * 120.00260 * 161.21152 * 7 5 4 10 10 H 1.48504 * 109.47245 * 60.00156 * 9 7 5 11 11 H 1.48498 * 109.47141 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46979 * 300.00248 * 9 7 5 13 13 C 1.34774 * 119.99728 * 125.42794 * 4 2 1 14 14 O 1.21295 * 120.00000 * 186.06628 * 13 4 2 15 15 C 1.50696 * 120.00011 * 6.06486 * 13 4 2 16 16 H 1.09002 * 109.08511 * 35.68789 * 15 13 4 17 17 C 1.50868 * 109.01980 * 276.63507 * 15 13 4 18 18 H 1.08000 * 127.53838 * 59.59533 * 17 15 13 19 19 S 1.76975 * 104.91642 * 239.54580 * 17 15 13 20 20 C 1.76456 * 96.89632 * 0.02562 * 19 17 15 21 21 C 1.30887 * 109.81617 * 359.97438 * 20 19 17 22 22 H 1.09006 * 109.47017 * 305.57522 * 1 2 3 23 23 H 1.08996 * 109.47333 * 65.57901 * 1 2 3 24 24 H 1.09001 * 109.47137 * 185.58389 * 1 2 3 25 25 H 1.09000 * 109.47014 * 239.99990 * 2 1 3 26 26 H 1.08997 * 109.47202 * 182.72514 * 3 2 1 27 27 H 1.08999 * 109.47109 * 302.72642 * 3 2 1 28 28 H 1.08997 * 109.47232 * 62.72092 * 3 2 1 29 29 H 0.97009 * 119.99614 * 179.97438 * 8 7 5 30 30 H 1.08000 * 125.09464 * 179.97438 * 20 19 17 31 31 H 1.07994 * 121.51324 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.5981 -0.2905 2.4383 6 1 1.5519 0.7611 2.6800 7 6 1.2314 -1.2380 3.3863 8 7 0.9295 -2.4605 3.0106 9 14 1.1675 -0.7739 5.1945 10 1 0.1886 0.3257 5.3892 11 1 0.7510 -1.9540 5.9940 12 1 2.5116 -0.3243 5.6379 13 6 2.8809 -1.7191 1.0756 14 8 3.1998 -2.3611 2.0540 15 6 3.4490 -2.0716 -0.2749 16 1 3.6072 -1.1561 -0.8450 17 6 2.4638 -2.9467 -1.0096 18 1 1.4465 -2.7072 -1.2821 19 16 3.3400 -4.4509 -1.3284 20 6 4.8595 -3.9764 -0.5672 21 6 4.7560 -2.7626 -0.0886 22 1 -0.3633 0.5979 0.8359 23 1 -0.3634 0.4249 -0.9357 24 1 -0.3633 -1.0228 0.1000 25 1 1.8933 -0.5138 -0.8900 26 1 3.1289 1.4430 -0.0489 27 1 1.6373 1.9703 -0.8645 28 1 1.7170 1.9421 0.9133 29 1 0.6738 -3.1221 3.6724 30 1 5.7428 -4.5948 -0.5054 31 1 5.5802 -2.2837 0.4191 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725631039.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:59 Heat of formation + Delta-G solvation = -52.094657 kcal Electronic energy + Delta-G solvation = -15805.798957 eV Core-core repulsion = 13291.175559 eV Total energy + Delta-G solvation = -2514.623398 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.080 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.02870 -36.83339 -35.63514 -33.93657 -31.45231 -29.50476 -27.82427 -26.36850 -23.63202 -22.11914 -21.40435 -19.51234 -17.72687 -17.15885 -17.03670 -16.46510 -15.50354 -15.32299 -14.75173 -14.43324 -14.08908 -13.51344 -13.31297 -12.92465 -12.82263 -12.60003 -12.45096 -12.37551 -12.25968 -12.01085 -11.87142 -11.61461 -11.38167 -11.08324 -10.51563 -10.28505 -9.42644 -8.71926 -8.50434 -7.81195 -5.73854 -5.43625 1.32894 1.50631 1.53385 1.54738 1.92693 2.53776 3.03151 3.38715 3.54763 3.72312 4.34328 4.46873 4.58405 4.72947 4.80654 4.89009 4.95597 5.08578 5.14797 5.20901 5.44453 5.55176 5.62756 5.70540 5.74760 6.07630 6.44625 6.51248 6.86219 7.37628 7.75891 8.13238 8.93286 9.28226 Molecular weight = 240.08amu Principal moments of inertia in cm(-1) A = 0.024396 B = 0.010128 C = 0.008357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.446167 B = 2764.050308 C = 3349.502322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.113 3.887 3 C -0.133 4.133 4 N -0.478 5.478 5 C -0.360 4.360 6 H 0.080 0.920 7 C -0.007 4.007 8 N -0.875 5.875 9 Si 0.986 3.014 10 H -0.243 1.243 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.476 3.524 14 O -0.608 6.608 15 C 0.080 3.920 16 H -0.012 1.012 17 C -0.801 4.801 18 H 0.056 0.944 19 S -0.149 6.149 20 C -0.157 4.157 21 C -0.184 4.184 22 H 0.056 0.944 23 H 0.078 0.922 24 H 0.003 0.997 25 H 0.057 0.943 26 H 0.037 0.963 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.245 0.755 30 H 0.173 0.827 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.616 8.672 -0.248 8.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.008 3.992 3 C -0.191 4.191 4 N -0.200 5.200 5 C -0.488 4.488 6 H 0.097 0.903 7 C -0.211 4.211 8 N -0.511 5.511 9 Si 0.809 3.191 10 H -0.167 1.167 11 H -0.215 1.215 12 H -0.205 1.205 13 C 0.267 3.733 14 O -0.491 6.491 15 C 0.057 3.943 16 H 0.006 0.994 17 C -0.930 4.930 18 H 0.074 0.926 19 S 0.096 5.904 20 C -0.289 4.289 21 C -0.218 4.218 22 H 0.075 0.925 23 H 0.097 0.903 24 H 0.022 0.978 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.191 0.809 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.242 7.072 -0.364 7.190 hybrid contribution -0.060 0.816 1.562 1.763 sum 1.182 7.888 1.198 8.066 Atomic orbital electron populations 1.21694 0.95758 0.99050 1.01052 1.21192 0.94491 0.94100 0.89400 1.21912 0.99919 0.95068 1.02168 1.43611 1.40185 1.31517 1.04671 1.19243 1.46555 0.92557 0.90423 0.90279 1.26546 0.94434 0.95090 1.05006 1.70335 1.41118 1.05051 1.34573 0.85181 0.78429 0.77564 0.77916 1.16721 1.21460 1.20501 1.22208 0.79695 0.80385 0.91004 1.90229 1.64356 1.52074 1.42483 1.17651 0.90995 0.95525 0.90127 0.99442 1.23893 1.02959 1.00421 1.65768 0.92580 1.81266 1.09665 1.30175 1.69336 1.24801 1.00497 0.98866 1.04780 1.22354 0.98023 0.97843 1.03599 0.92531 0.90343 0.97815 0.92497 0.94351 0.89518 0.92624 0.94586 0.80943 0.87021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -8.66 8.97 71.98 0.65 -8.02 16 2 C 0.11 8.93 2.88 44.99 0.13 9.06 16 3 C -0.13 -8.69 9.28 71.98 0.67 -8.02 16 4 N -0.48 -43.29 2.44 -613.12 -1.50 -44.79 16 5 C -0.36 -31.99 7.92 84.04 0.67 -31.32 16 6 H 0.08 6.57 7.08 -2.91 -0.02 6.55 16 7 C -0.01 -0.65 4.38 84.93 0.37 -0.28 16 8 N -0.88 -84.82 11.54 21.66 0.25 -84.57 16 9 Si 0.99 70.44 29.59 68.60 2.03 72.47 16 10 H -0.24 -15.60 7.11 99.48 0.71 -14.89 16 11 H -0.29 -20.19 7.11 99.48 0.71 -19.49 16 12 H -0.28 -19.69 7.11 99.48 0.71 -18.98 16 13 C 0.48 46.60 6.14 87.66 0.54 47.14 16 14 O -0.61 -63.57 13.65 -3.08 -0.04 -63.61 16 15 C 0.08 7.47 2.22 -13.50 -0.03 7.44 16 16 H -0.01 -1.07 6.76 -2.39 -0.02 -1.08 16 17 C -0.80 -78.32 10.59 71.29 0.75 -77.57 16 18 H 0.06 5.80 7.93 -2.91 -0.02 5.78 16 19 S -0.15 -12.94 22.98 -56.49 -1.30 -14.24 16 20 C -0.16 -12.63 11.14 67.90 0.76 -11.87 16 21 C -0.18 -15.73 8.94 25.24 0.23 -15.51 16 22 H 0.06 4.00 7.75 -2.38 -0.02 3.98 16 23 H 0.08 4.90 8.14 -2.39 -0.02 4.88 16 24 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 25 H 0.06 4.83 4.96 -2.39 -0.01 4.82 16 26 H 0.04 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.09 4.80 8.14 -2.39 -0.02 4.78 16 28 H 0.05 3.55 7.15 -2.39 -0.02 3.53 16 29 H 0.25 22.77 8.31 -92.70 -0.77 22.00 16 30 H 0.17 11.72 8.06 -2.91 -0.02 11.69 16 31 H 0.11 8.90 8.06 -2.91 -0.02 8.87 16 Total: -2.00 -203.85 272.61 5.29 -198.56 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 1.12 Total: 25.12 kcal Atomic # 6 Polarization: -93.67 SS G_CDS: 4.72 Total: -88.95 kcal Atomic # 7 Polarization: -128.11 SS G_CDS: -1.25 Total: -129.36 kcal Atomic # 8 Polarization: -63.57 SS G_CDS: -0.04 Total: -63.61 kcal Atomic # 14 Polarization: 70.44 SS G_CDS: 2.03 Total: 72.47 kcal Atomic # 16 Polarization: -12.94 SS G_CDS: -1.30 Total: -14.24 kcal Total: -203.85 5.29 -198.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725631039.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.468 kcal (2) G-P(sol) polarization free energy of solvation -203.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -198.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds