Wall clock time and date at job start Mon Mar 30 2020 04:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50701 * 109.46925 * 2 1 4 4 N 1.27944 * 119.99826 * 234.99657 * 3 2 1 5 5 Si 1.86796 * 119.99893 * 55.28181 * 3 2 1 6 6 H 1.48503 * 109.47100 * 269.72089 * 5 3 2 7 7 H 1.48505 * 109.47434 * 29.71751 * 5 3 2 8 8 H 1.48501 * 109.47428 * 149.72036 * 5 3 2 9 9 N 1.46507 * 109.46814 * 240.00312 * 2 1 3 10 10 C 1.46493 * 119.99909 * 59.99988 * 9 2 1 11 11 C 1.34780 * 119.99554 * 239.99797 * 9 2 1 12 12 O 1.21278 * 119.99926 * 0.02562 * 11 9 2 13 13 C 1.50701 * 119.99553 * 179.97438 * 11 9 2 14 14 C 1.52997 * 109.47014 * 179.97438 * 13 11 9 15 15 H 1.09004 * 109.08368 * 307.35811 * 14 13 11 16 16 C 1.50865 * 109.10328 * 66.45612 * 14 13 11 17 17 H 1.08004 * 127.54472 * 300.48595 * 16 14 13 18 18 S 1.76978 * 104.91187 * 120.50792 * 16 14 13 19 19 C 1.76450 * 96.89854 * 0.02562 * 18 16 14 20 20 C 1.30885 * 109.81365 * 359.97438 * 19 18 16 21 21 H 1.08995 * 109.46785 * 59.99899 * 1 2 3 22 22 H 1.09005 * 109.46851 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46930 * 299.99437 * 1 2 3 24 24 H 1.08996 * 109.46761 * 120.00656 * 2 1 3 25 25 H 0.97005 * 119.99714 * 180.02562 * 4 3 2 26 26 H 1.08998 * 109.47177 * 90.00053 * 10 9 2 27 27 H 1.09005 * 109.46887 * 209.99794 * 10 9 2 28 28 H 1.08994 * 109.47635 * 329.99669 * 10 9 2 29 29 H 1.08998 * 109.47090 * 300.00427 * 13 11 9 30 30 H 1.09000 * 109.46788 * 60.00517 * 13 11 9 31 31 H 1.07997 * 125.09337 * 179.97438 * 19 18 16 32 32 H 1.07997 * 121.50751 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.8448 1.8121 -0.9076 5 14 1.4750 2.6085 1.3297 6 1 0.2461 3.3117 0.8819 7 1 1.1877 1.8557 2.5771 8 1 2.5479 3.6023 1.5873 9 7 2.0184 -0.6906 -1.1963 10 6 1.6644 -0.1900 -2.5268 11 6 2.7932 -1.7864 -1.0726 12 8 3.0858 -2.2010 0.0289 13 6 3.2950 -2.4971 -2.3031 14 6 4.1457 -3.6987 -1.8868 15 1 4.9143 -3.3666 -1.1889 16 6 3.2642 -4.7147 -1.2036 17 1 2.6707 -4.5773 -0.3117 18 16 3.4157 -6.1810 -2.1828 19 6 4.5335 -5.5226 -3.3788 20 6 4.8024 -4.2736 -3.0944 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.1684 2.7266 -0.9074 26 1 2.4157 0.5274 -2.8568 27 1 1.6237 -1.0225 -3.2292 28 1 0.6904 0.2974 -2.4844 29 1 2.4470 -2.8397 -2.8961 30 1 3.9004 -1.8121 -2.8968 31 1 4.9357 -6.0684 -4.2194 32 1 5.4705 -3.6866 -3.7070 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725631043.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:51 Heat of formation + Delta-G solvation = 12.922555 kcal Electronic energy + Delta-G solvation = -15577.892168 eV Core-core repulsion = 13052.432388 eV Total energy + Delta-G solvation = -2525.459780 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.25416 -36.59031 -34.54545 -33.84974 -31.29748 -28.98539 -26.34744 -24.74680 -23.55672 -21.12562 -19.73045 -18.30040 -17.13207 -16.84897 -16.05998 -15.44350 -14.80428 -14.62606 -13.96920 -13.57023 -13.22762 -12.91018 -12.78584 -12.23539 -12.12384 -11.85757 -11.65649 -11.54284 -11.30265 -11.14196 -10.69522 -10.32918 -10.03141 -9.83918 -9.30338 -9.09072 -8.73131 -8.45286 -7.85954 -7.71383 -6.29678 -3.04859 1.71895 1.86816 2.14657 2.51880 2.63009 3.55368 3.78476 3.83423 4.08977 4.54633 5.29222 5.31329 5.49884 5.68599 5.72059 5.82467 5.95420 5.98407 6.20512 6.31373 6.34380 6.48203 6.64421 6.77713 6.90480 7.17395 7.36643 7.84132 7.90285 7.96070 8.26931 8.32507 9.07449 9.30840 9.55545 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.048407 B = 0.006055 C = 0.005875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.289389 B = 4623.301381 C = 4764.541343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.163 3.837 3 C -0.020 4.020 4 N -0.615 5.615 5 Si 0.934 3.066 6 H -0.240 1.240 7 H -0.231 1.231 8 H -0.252 1.252 9 N -0.611 5.611 10 C 0.092 3.908 11 C 0.528 3.472 12 O -0.527 6.527 13 C -0.122 4.122 14 C 0.108 3.892 15 H -0.008 1.008 16 C -0.767 4.767 17 H 0.101 0.899 18 S -0.148 6.148 19 C -0.166 4.166 20 C -0.214 4.214 21 H 0.062 0.938 22 H 0.074 0.926 23 H 0.063 0.937 24 H 0.119 0.881 25 H 0.328 0.672 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.119 0.881 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.261 16.191 0.214 17.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 C -0.270 4.270 4 N -0.227 5.227 5 Si 0.750 3.250 6 H -0.164 1.164 7 H -0.153 1.153 8 H -0.175 1.175 9 N -0.347 5.347 10 C -0.051 4.051 11 C 0.319 3.681 12 O -0.401 6.401 13 C -0.163 4.163 14 C 0.088 3.912 15 H 0.010 0.990 16 C -0.895 4.895 17 H 0.119 0.881 18 S 0.101 5.899 19 C -0.299 4.299 20 C -0.251 4.251 21 H 0.081 0.919 22 H 0.093 0.907 23 H 0.082 0.918 24 H 0.137 0.863 25 H 0.144 0.856 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.136 0.864 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.512 14.797 0.823 16.187 hybrid contribution 0.670 2.133 -0.135 2.239 sum -5.842 16.929 0.687 17.922 Atomic orbital electron populations 1.22071 0.94186 1.03592 1.01866 1.20207 0.93734 0.88053 0.92225 1.31009 0.94296 1.02460 0.99243 1.68289 1.08276 1.21329 1.24793 0.85712 0.81199 0.78504 0.79566 1.16353 1.15323 1.17546 1.47859 1.52858 1.28659 1.05332 1.21593 0.99758 0.99565 0.84212 1.21188 0.76325 0.78057 0.92525 1.90593 1.56731 1.64331 1.28475 1.22360 1.01138 0.98987 0.93826 1.17300 0.92180 0.92209 0.89557 0.99048 1.24408 1.51009 0.92089 1.22021 0.88122 1.82128 1.52212 1.27653 1.27938 1.24466 1.04388 0.99055 1.02034 1.22455 1.04718 0.96247 1.01718 0.91949 0.90710 0.91804 0.86337 0.85607 0.92204 0.91579 0.92752 0.90789 0.93448 0.86360 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 8.74 37.16 0.32 -1.58 16 2 C 0.16 2.53 2.76 -69.07 -0.19 2.34 16 3 C -0.02 -0.26 5.16 -13.90 -0.07 -0.33 16 4 N -0.61 -8.33 11.38 56.23 0.64 -7.69 16 5 Si 0.93 8.78 27.81 -169.99 -4.73 4.05 16 6 H -0.24 -2.08 7.11 56.52 0.40 -1.68 16 7 H -0.23 -2.25 7.11 56.52 0.40 -1.85 16 8 H -0.25 -2.42 7.11 56.52 0.40 -2.02 16 9 N -0.61 -11.38 2.47 -175.26 -0.43 -11.82 16 10 C 0.09 1.40 9.08 59.84 0.54 1.94 16 11 C 0.53 12.77 7.42 -10.98 -0.08 12.69 16 12 O -0.53 -14.87 13.92 5.56 0.08 -14.80 16 13 C -0.12 -3.04 3.66 -27.88 -0.10 -3.14 16 14 C 0.11 3.21 2.36 -93.65 -0.22 2.99 16 15 H -0.01 -0.26 7.86 -51.93 -0.41 -0.66 16 16 C -0.77 -25.35 10.49 36.09 0.38 -24.97 16 17 H 0.10 3.64 7.41 -52.48 -0.39 3.25 16 18 S -0.15 -4.41 22.98 -107.50 -2.47 -6.88 16 19 C -0.17 -4.43 11.14 29.05 0.32 -4.11 16 20 C -0.21 -5.77 9.55 -36.80 -0.35 -6.12 16 21 H 0.06 0.66 6.66 -51.93 -0.35 0.32 16 22 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.06 0.59 6.66 -51.93 -0.35 0.25 16 24 H 0.12 2.08 6.90 -51.93 -0.36 1.72 16 25 H 0.33 3.54 8.23 -40.82 -0.34 3.20 16 26 H 0.06 0.89 7.12 -51.93 -0.37 0.52 16 27 H 0.07 1.02 6.44 -51.93 -0.33 0.69 16 28 H 0.05 0.68 6.43 -51.93 -0.33 0.35 16 29 H 0.07 1.84 7.39 -51.93 -0.38 1.46 16 30 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 31 H 0.12 2.70 8.06 -52.49 -0.42 2.28 16 32 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 273.69 15.07 4.12 4.12 Total: -1.00 -36.27 273.69 -6.33 -42.60 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -4.09 Total: 10.71 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 0.55 Total: -20.30 kcal Atomic # 7 Polarization: -19.71 SS G_CDS: 0.21 Total: -19.51 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.08 Total: -14.80 kcal Atomic # 14 Polarization: 8.78 SS G_CDS: -4.73 Total: 4.05 kcal Atomic # 16 Polarization: -4.41 SS G_CDS: -2.47 Total: -6.88 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -36.27 -6.33 -42.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725631043.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.523 kcal (2) G-P(sol) polarization free energy of solvation -36.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds