Wall clock time and date at job start Mon Mar 30 2020 04:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46658 * 2 1 4 4 N 1.46498 * 109.47020 * 294.99491 * 3 2 1 5 5 C 1.46501 * 120.00252 * 269.99970 * 4 3 2 6 6 C 1.34773 * 119.99908 * 90.00531 * 4 3 2 7 7 O 1.21282 * 119.99931 * 359.97438 * 6 4 3 8 8 C 1.50700 * 120.00406 * 179.97438 * 6 4 3 9 9 H 1.09002 * 108.99356 * 57.59393 * 8 6 4 10 10 C 1.50863 * 109.10204 * 298.54825 * 8 6 4 11 11 H 1.08002 * 127.54823 * 59.51337 * 10 8 6 12 12 S 1.76988 * 104.91020 * 239.24524 * 10 8 6 13 13 C 1.76451 * 96.89392 * 0.24140 * 12 10 8 14 14 C 1.30882 * 109.81965 * 359.97438 * 13 12 10 15 15 C 1.50702 * 109.46897 * 119.99476 * 2 1 3 16 16 N 1.27946 * 120.00314 * 265.00087 * 15 2 1 17 17 Si 1.86802 * 119.99778 * 85.00600 * 15 2 1 18 18 H 1.48497 * 109.47230 * 89.99717 * 17 15 2 19 19 H 1.48501 * 109.47170 * 209.99640 * 17 15 2 20 20 H 1.48500 * 109.47036 * 329.99563 * 17 15 2 21 21 H 1.09001 * 109.47507 * 299.99865 * 1 2 3 22 22 H 1.08997 * 109.47163 * 60.00400 * 1 2 3 23 23 H 1.09004 * 109.46884 * 180.02562 * 1 2 3 24 24 H 1.08988 * 109.47295 * 239.99951 * 2 1 3 25 25 H 1.09005 * 109.46673 * 174.99973 * 3 2 1 26 26 H 1.08997 * 109.47472 * 54.99888 * 3 2 1 27 27 H 1.09000 * 109.47416 * 270.00320 * 5 4 3 28 28 H 1.09002 * 109.46790 * 30.00625 * 5 4 3 29 29 H 1.09003 * 109.46692 * 150.00075 * 5 4 3 30 30 H 1.08002 * 125.09229 * 180.02562 * 13 12 10 31 31 H 1.07997 * 121.50847 * 179.97438 * 14 13 12 32 32 H 0.96993 * 120.00059 * 180.02562 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.6524 2.0974 -1.2518 5 6 2.5427 2.0417 -2.4139 6 6 0.4768 2.7513 -1.3345 7 8 -0.2605 2.7971 -0.3726 8 6 0.0783 3.4255 -2.6220 9 1 0.0676 2.6849 -3.4217 10 6 1.0897 4.4949 -2.9529 11 1 2.1496 4.3698 -3.1180 12 16 0.1578 5.9981 -3.0191 13 6 -1.4133 5.2903 -2.6396 14 6 -1.2881 3.9990 -2.4663 15 6 2.0323 -0.7103 1.2306 16 7 2.3366 -0.0398 2.2769 17 14 2.2108 -2.5698 1.2281 18 1 3.5730 -2.9357 0.7639 19 1 2.0004 -3.0891 2.6034 20 1 1.2008 -3.1628 0.3152 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 3.1262 1.4438 0.0896 26 1 1.6052 1.9816 0.8418 27 1 3.2230 2.8931 -2.3917 28 1 3.1179 1.1162 -2.3868 29 1 1.9496 2.0742 -3.3279 30 1 -2.3398 5.8400 -2.5627 31 1 -2.1372 3.3770 -2.2247 32 1 2.6602 -0.4970 3.0688 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725631212.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:49 Heat of formation + Delta-G solvation = 1.626982 kcal Electronic energy + Delta-G solvation = -15725.954252 eV Core-core repulsion = 13200.004660 eV Total energy + Delta-G solvation = -2525.949592 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.98277 -36.73418 -34.36093 -33.79375 -31.82318 -27.85459 -26.22387 -25.28735 -23.19290 -21.48758 -19.33718 -18.71349 -17.36318 -16.65805 -15.59088 -15.36468 -15.03056 -14.29613 -13.91666 -13.64943 -13.24835 -12.90597 -12.57223 -12.19274 -11.88176 -11.79580 -11.50664 -11.42799 -11.16898 -10.88346 -10.60118 -10.49583 -10.16960 -10.01329 -9.73718 -9.31864 -8.84936 -8.41004 -7.90941 -7.53308 -6.44092 -3.42352 1.75098 1.92611 2.16128 2.57786 2.65702 3.50091 3.93160 4.18901 4.25954 4.69778 5.34898 5.47384 5.50541 5.64122 5.91563 6.08689 6.11935 6.20319 6.33386 6.36622 6.46160 6.61581 6.66181 6.73095 6.83961 6.94162 7.31624 7.59105 7.68507 7.93360 7.99973 8.41411 8.64253 9.02828 9.68918 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.050167 B = 0.006274 C = 0.006051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.004578 B = 4461.731784 C = 4626.441583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.077 4.077 3 C 0.135 3.865 4 N -0.622 5.622 5 C 0.101 3.899 6 C 0.515 3.485 7 O -0.576 6.576 8 C 0.083 3.917 9 H 0.008 0.992 10 C -0.768 4.768 11 H 0.109 0.891 12 S -0.139 6.139 13 C -0.162 4.162 14 C -0.179 4.179 15 C 0.004 3.996 16 N -0.628 5.628 17 Si 0.930 3.070 18 H -0.242 1.242 19 H -0.251 1.251 20 H -0.234 1.234 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.043 0.957 24 H 0.082 0.918 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.049 0.951 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.124 0.876 31 H 0.097 0.903 32 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.554 -13.646 4.361 14.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.098 4.098 3 C 0.011 3.989 4 N -0.355 5.355 5 C -0.042 4.042 6 C 0.308 3.692 7 O -0.456 6.456 8 C 0.060 3.940 9 H 0.025 0.975 10 C -0.897 4.897 11 H 0.127 0.873 12 S 0.109 5.891 13 C -0.295 4.295 14 C -0.215 4.215 15 C -0.246 4.246 16 N -0.240 5.240 17 Si 0.747 3.253 18 H -0.165 1.165 19 H -0.174 1.174 20 H -0.156 1.156 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.062 0.938 24 H 0.101 0.899 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.142 0.858 31 H 0.115 0.885 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.704 -12.191 4.830 13.626 hybrid contribution -0.103 -1.974 0.718 2.103 sum 3.600 -14.165 5.548 15.633 Atomic orbital electron populations 1.21682 0.92665 1.00169 1.04150 1.20871 0.97560 0.97475 0.93862 1.21117 0.98339 0.90683 0.88792 1.47913 1.21040 1.54745 1.11841 1.21602 0.94078 0.99061 0.89483 1.23298 0.78763 0.73582 0.93568 1.90468 1.52747 1.61300 1.41061 1.17707 0.90901 0.96017 0.89329 0.97470 1.24376 0.96286 0.86661 1.82397 0.87293 1.82166 1.01295 1.22023 1.83639 1.24463 0.99846 0.98200 1.07038 1.22049 0.97409 0.95373 1.06640 1.30388 0.92468 1.06098 0.95619 1.68265 1.09056 1.44169 1.02512 0.85804 0.82557 0.75074 0.81877 1.16530 1.17447 1.15595 0.91776 0.91262 0.93846 0.89937 0.92181 0.89578 0.93293 0.93919 0.90488 0.85807 0.88491 0.85464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 7.87 37.16 0.29 -1.87 16 2 C -0.08 -1.19 2.52 -91.77 -0.23 -1.42 16 3 C 0.13 2.55 4.38 -4.04 -0.02 2.53 16 4 N -0.62 -13.57 2.76 -181.57 -0.50 -14.07 16 5 C 0.10 1.95 9.00 59.85 0.54 2.49 16 6 C 0.51 13.40 5.60 -10.99 -0.06 13.34 16 7 O -0.58 -16.09 13.79 5.56 0.08 -16.01 16 8 C 0.08 2.29 2.27 -94.80 -0.22 2.07 16 9 H 0.01 0.22 7.26 -51.93 -0.38 -0.15 16 10 C -0.77 -22.76 10.26 36.09 0.37 -22.39 16 11 H 0.11 3.26 6.29 -52.49 -0.33 2.93 16 12 S -0.14 -3.94 22.98 -107.50 -2.47 -6.41 16 13 C -0.16 -4.31 11.14 29.05 0.32 -3.99 16 14 C -0.18 -4.83 8.78 -36.80 -0.32 -5.15 16 15 C 0.00 0.05 4.83 -13.90 -0.07 -0.02 16 16 N -0.63 -8.63 12.81 56.23 0.72 -7.91 16 17 Si 0.93 8.90 29.29 -169.99 -4.98 3.92 16 18 H -0.24 -2.29 7.11 56.52 0.40 -1.89 16 19 H -0.25 -2.37 7.11 56.52 0.40 -1.97 16 20 H -0.23 -2.31 7.11 56.52 0.40 -1.91 16 21 H 0.06 1.20 8.00 -51.93 -0.42 0.78 16 22 H 0.07 1.36 6.06 -51.93 -0.31 1.04 16 23 H 0.04 0.59 7.94 -51.93 -0.41 0.18 16 24 H 0.08 1.11 7.85 -51.94 -0.41 0.71 16 25 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 26 H 0.09 1.89 7.26 -51.93 -0.38 1.51 16 27 H 0.05 0.99 7.10 -51.93 -0.37 0.62 16 28 H 0.04 0.64 8.07 -51.93 -0.42 0.22 16 29 H 0.08 1.57 6.11 -51.93 -0.32 1.25 16 30 H 0.12 2.84 8.06 -52.49 -0.42 2.42 16 31 H 0.10 2.43 8.06 -52.49 -0.42 2.01 16 32 H 0.33 3.59 8.23 -40.82 -0.34 3.25 16 LS Contribution 273.95 15.07 4.13 4.13 Total: -1.00 -32.60 273.95 -6.55 -39.16 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -4.13 Total: 11.61 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 0.61 Total: -14.41 kcal Atomic # 7 Polarization: -22.20 SS G_CDS: 0.22 Total: -21.98 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.08 Total: -16.01 kcal Atomic # 14 Polarization: 8.90 SS G_CDS: -4.98 Total: 3.92 kcal Atomic # 16 Polarization: -3.94 SS G_CDS: -2.47 Total: -6.41 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.60 -6.55 -39.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725631212.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.783 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds