Wall clock time and date at job start Mon Mar 30 2020 04:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46658 * 2 1 4 4 N 1.46498 * 109.47020 * 294.99491 * 3 2 1 5 5 C 1.46501 * 120.00252 * 269.99970 * 4 3 2 6 6 C 1.34773 * 119.99908 * 90.00531 * 4 3 2 7 7 O 1.21282 * 119.99931 * 359.97438 * 6 4 3 8 8 C 1.50700 * 120.00406 * 179.97438 * 6 4 3 9 9 H 1.09002 * 108.99356 * 57.59393 * 8 6 4 10 10 C 1.50863 * 109.10204 * 298.54825 * 8 6 4 11 11 H 1.08002 * 127.54823 * 59.51337 * 10 8 6 12 12 S 1.76988 * 104.91020 * 239.24524 * 10 8 6 13 13 C 1.76451 * 96.89392 * 0.24140 * 12 10 8 14 14 C 1.30882 * 109.81965 * 359.97438 * 13 12 10 15 15 C 1.50702 * 109.46897 * 119.99476 * 2 1 3 16 16 N 1.27946 * 120.00314 * 265.00087 * 15 2 1 17 17 Si 1.86802 * 119.99778 * 85.00600 * 15 2 1 18 18 H 1.48497 * 109.47230 * 89.99717 * 17 15 2 19 19 H 1.48501 * 109.47170 * 209.99640 * 17 15 2 20 20 H 1.48500 * 109.47036 * 329.99563 * 17 15 2 21 21 H 1.09001 * 109.47507 * 299.99865 * 1 2 3 22 22 H 1.08997 * 109.47163 * 60.00400 * 1 2 3 23 23 H 1.09004 * 109.46884 * 180.02562 * 1 2 3 24 24 H 1.08988 * 109.47295 * 239.99951 * 2 1 3 25 25 H 1.09005 * 109.46673 * 174.99973 * 3 2 1 26 26 H 1.08997 * 109.47472 * 54.99888 * 3 2 1 27 27 H 1.09000 * 109.47416 * 270.00320 * 5 4 3 28 28 H 1.09002 * 109.46790 * 30.00625 * 5 4 3 29 29 H 1.09003 * 109.46692 * 150.00075 * 5 4 3 30 30 H 1.08002 * 125.09229 * 180.02562 * 13 12 10 31 31 H 1.07997 * 121.50847 * 179.97438 * 14 13 12 32 32 H 0.96993 * 120.00059 * 180.02562 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.6524 2.0974 -1.2518 5 6 2.5427 2.0417 -2.4139 6 6 0.4768 2.7513 -1.3345 7 8 -0.2605 2.7971 -0.3726 8 6 0.0783 3.4255 -2.6220 9 1 0.0676 2.6849 -3.4217 10 6 1.0897 4.4949 -2.9529 11 1 2.1496 4.3698 -3.1180 12 16 0.1578 5.9981 -3.0191 13 6 -1.4133 5.2903 -2.6396 14 6 -1.2881 3.9990 -2.4663 15 6 2.0323 -0.7103 1.2306 16 7 2.3366 -0.0398 2.2769 17 14 2.2108 -2.5698 1.2281 18 1 3.5730 -2.9357 0.7639 19 1 2.0004 -3.0891 2.6034 20 1 1.2008 -3.1628 0.3152 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 3.1262 1.4438 0.0896 26 1 1.6052 1.9816 0.8418 27 1 3.2230 2.8931 -2.3917 28 1 3.1179 1.1162 -2.3868 29 1 1.9496 2.0742 -3.3279 30 1 -2.3398 5.8400 -2.5627 31 1 -2.1372 3.3770 -2.2247 32 1 2.6602 -0.4970 3.0688 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725631212.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:49 Heat of formation + Delta-G solvation = -19.344750 kcal Electronic energy + Delta-G solvation = -15726.863655 eV Core-core repulsion = 13200.004660 eV Total energy + Delta-G solvation = -2526.858995 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.83567 -38.12536 -36.01185 -35.88475 -33.16230 -29.80178 -27.90179 -26.91357 -24.62010 -23.59841 -21.08153 -20.05191 -19.36473 -17.96870 -17.42856 -17.20698 -16.68848 -15.91651 -15.29505 -15.15795 -14.77177 -14.42362 -14.01164 -13.75461 -13.69125 -13.16000 -13.07437 -12.66856 -12.46051 -12.17821 -12.13904 -12.11880 -11.92641 -11.84740 -11.46910 -11.27960 -10.56851 -10.07973 -9.87544 -9.22316 -8.68546 -5.71477 0.88624 1.12916 1.38574 1.50466 1.77708 1.80928 1.92104 2.17930 2.53657 3.25271 3.61440 3.98714 4.13272 4.34294 4.40170 4.46368 4.52477 4.70964 4.72048 4.85576 4.89420 4.98254 5.05153 5.06068 5.15213 5.25098 5.45954 5.48284 5.84140 5.97115 6.19575 6.67198 6.79703 7.04361 7.68899 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.050167 B = 0.006274 C = 0.006051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.004578 B = 4461.731784 C = 4626.441583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.078 4.078 3 C 0.136 3.864 4 N -0.618 5.618 5 C 0.102 3.898 6 C 0.514 3.486 7 O -0.603 6.603 8 C 0.075 3.925 9 H 0.009 0.991 10 C -0.801 4.801 11 H 0.097 0.903 12 S -0.168 6.168 13 C -0.159 4.159 14 C -0.188 4.188 15 C -0.010 4.010 16 N -0.662 5.662 17 Si 0.995 3.005 18 H -0.235 1.235 19 H -0.250 1.250 20 H -0.233 1.233 21 H 0.035 0.965 22 H 0.037 0.963 23 H 0.078 0.922 24 H 0.111 0.889 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.035 0.965 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.162 0.838 31 H 0.117 0.883 32 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.921 -16.245 4.704 17.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.098 4.098 3 C 0.013 3.987 4 N -0.350 5.350 5 C -0.041 4.041 6 C 0.306 3.694 7 O -0.486 6.486 8 C 0.052 3.948 9 H 0.027 0.973 10 C -0.930 4.930 11 H 0.115 0.885 12 S 0.077 5.923 13 C -0.291 4.291 14 C -0.223 4.223 15 C -0.256 4.256 16 N -0.276 5.276 17 Si 0.808 3.192 18 H -0.158 1.158 19 H -0.173 1.173 20 H -0.156 1.156 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.097 0.903 24 H 0.129 0.871 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.180 0.820 31 H 0.135 0.865 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.100 -14.797 5.174 16.203 hybrid contribution -0.217 -1.140 0.623 1.317 sum 3.883 -15.936 5.797 17.397 Atomic orbital electron populations 1.21577 0.93907 1.01476 1.01164 1.20910 0.96591 0.95435 0.96902 1.21226 0.99190 0.92412 0.85903 1.47867 1.19917 1.53651 1.13570 1.21675 0.93454 1.01084 0.87839 1.22690 0.80137 0.74218 0.92375 1.90448 1.54034 1.62644 1.41486 1.17724 0.91041 0.95825 0.90170 0.97344 1.24421 0.96330 0.87875 1.84416 0.88544 1.82118 1.03094 1.22302 1.84749 1.24848 1.00094 0.98148 1.06061 1.22358 0.97833 0.96097 1.06043 1.30908 0.91690 1.08992 0.94038 1.68240 1.09749 1.46148 1.03488 0.84921 0.82656 0.69802 0.81811 1.15757 1.17288 1.15559 0.94577 0.94390 0.90314 0.87065 0.90329 0.93218 0.94684 0.88823 0.91951 0.82023 0.86549 0.83818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.02 7.87 71.98 0.57 -3.45 16 2 C -0.08 -2.26 2.52 -11.54 -0.03 -2.29 16 3 C 0.14 5.05 4.38 86.38 0.38 5.42 16 4 N -0.62 -26.78 2.76 -846.75 -2.34 -29.11 16 5 C 0.10 3.82 9.00 127.77 1.15 4.97 16 6 C 0.51 27.00 5.60 87.66 0.49 27.49 16 7 O -0.60 -34.29 13.79 -3.03 -0.04 -34.34 16 8 C 0.07 4.16 2.27 -13.50 -0.03 4.13 16 9 H 0.01 0.51 7.26 -2.39 -0.02 0.50 16 10 C -0.80 -48.28 10.26 71.29 0.73 -47.55 16 11 H 0.10 5.92 6.29 -2.91 -0.02 5.91 16 12 S -0.17 -9.62 22.98 -56.49 -1.30 -10.92 16 13 C -0.16 -8.27 11.14 67.90 0.76 -7.51 16 14 C -0.19 -10.07 8.78 25.24 0.22 -9.85 16 15 C -0.01 -0.24 4.83 88.68 0.43 0.19 16 16 N -0.66 -17.29 12.81 24.11 0.31 -16.98 16 17 Si 1.00 14.79 29.29 68.60 2.01 16.79 16 18 H -0.23 -3.26 7.11 99.48 0.71 -2.55 16 19 H -0.25 -3.66 7.11 99.48 0.71 -2.95 16 20 H -0.23 -3.47 7.11 99.48 0.71 -2.76 16 21 H 0.04 1.35 8.00 -2.39 -0.02 1.33 16 22 H 0.04 1.47 6.06 -2.39 -0.01 1.45 16 23 H 0.08 1.96 7.94 -2.38 -0.02 1.94 16 24 H 0.11 2.58 7.85 -2.39 -0.02 2.56 16 25 H 0.08 2.60 8.07 -2.38 -0.02 2.58 16 26 H 0.05 2.22 7.26 -2.39 -0.02 2.21 16 27 H 0.03 1.41 7.10 -2.39 -0.02 1.39 16 28 H 0.09 2.53 8.07 -2.39 -0.02 2.51 16 29 H 0.06 2.52 6.11 -2.39 -0.01 2.51 16 30 H 0.16 7.01 8.06 -2.91 -0.02 6.99 16 31 H 0.12 5.70 8.06 -2.91 -0.02 5.68 16 32 H 0.34 6.93 8.23 -92.71 -0.76 6.17 16 Total: -1.00 -71.98 273.95 4.42 -67.56 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: 1.12 Total: 35.44 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 4.66 Total: -28.45 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -2.03 Total: -46.09 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.04 Total: -34.34 kcal Atomic # 14 Polarization: 14.79 SS G_CDS: 2.01 Total: 16.79 kcal Atomic # 16 Polarization: -9.62 SS G_CDS: -1.30 Total: -10.92 kcal Total: -71.98 4.42 -67.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725631212.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.218 kcal (2) G-P(sol) polarization free energy of solvation -71.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds