Wall clock time and date at job start Mon Mar 30 2020 03:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 110.99870 * 2 1 4 4 C 1.50697 * 109.46943 * 180.02562 * 3 2 1 5 5 S 1.71070 * 125.45655 * 269.69094 * 4 3 2 6 6 C 1.76090 * 90.33443 * 179.97438 * 5 4 3 7 7 C 1.47042 * 125.51950 * 180.02562 * 6 5 4 8 8 O 1.21964 * 119.99811 * 0.27116 * 7 6 5 9 9 C 1.41456 * 120.00371 * 180.27076 * 7 6 5 10 10 H 1.08000 * 119.99964 * 0.02562 * 9 7 6 11 11 C 1.40458 * 120.00115 * 179.97438 * 9 7 6 12 12 N 1.30478 * 119.99881 * 0.02562 * 11 9 7 13 13 Si 1.86793 * 119.99966 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47170 * 60.00485 * 13 11 9 15 15 H 1.48504 * 109.47016 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47494 * 300.00203 * 13 11 9 17 17 N 1.30932 * 108.96701 * 0.33283 * 6 5 4 18 18 C 1.30478 * 115.91277 * 359.74418 * 17 6 5 19 19 C 1.50696 * 122.14558 * 180.02562 * 18 17 6 20 20 H 1.08998 * 109.46961 * 60.00043 * 1 2 3 21 21 H 1.08996 * 109.46906 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46798 * 300.00327 * 1 2 3 23 23 H 1.00901 * 110.99869 * 236.04711 * 2 1 3 24 24 H 1.09004 * 109.47031 * 299.99620 * 3 2 1 25 25 H 1.08995 * 109.47111 * 59.99900 * 3 2 1 26 26 H 0.97003 * 119.99526 * 179.97438 * 12 11 9 27 27 H 1.09002 * 109.47209 * 269.97714 * 19 18 17 28 28 H 1.08991 * 109.47186 * 29.98452 * 19 18 17 29 29 H 1.09010 * 109.47047 * 149.98047 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5019 1.3312 -0.0006 5 16 4.4947 1.3120 1.3924 6 6 5.9339 1.2675 0.3787 7 6 7.3209 1.2321 0.8655 8 8 7.5466 1.2271 2.0641 9 6 8.3936 1.2039 -0.0562 10 1 8.1938 1.2087 -1.1175 11 6 9.7185 1.1706 0.4089 12 7 9.9598 1.1653 1.6912 13 14 11.1349 1.1326 -0.8083 14 1 11.0853 2.3456 -1.6635 15 1 12.4223 1.1001 -0.0688 16 1 11.0232 -0.0786 -1.6602 17 7 5.5692 1.2777 -0.8788 18 6 4.2836 1.3113 -1.0994 19 6 3.7093 1.3264 -2.4925 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8306 -0.5261 -0.7814 24 1 1.6460 1.8948 -0.8901 25 1 1.6460 1.8948 0.8899 26 1 10.8749 1.1419 2.0123 27 1 3.5973 2.3574 -2.8282 28 1 4.3799 0.7952 -3.1677 29 1 2.7350 0.8376 -2.4892 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757127028.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:38 Heat of formation + Delta-G solvation = -4.826726 kcal Electronic energy + Delta-G solvation = -14462.814051 eV Core-core repulsion = 11898.470173 eV Total energy + Delta-G solvation = -2564.343879 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.20890 -36.71956 -35.93218 -32.82720 -31.54747 -28.94727 -27.45500 -25.40470 -24.40013 -22.86290 -20.27754 -18.44848 -17.43496 -16.33044 -15.59780 -15.53988 -14.92995 -14.39912 -13.89472 -13.61862 -13.27045 -12.79785 -12.54822 -12.48402 -12.20770 -11.95515 -11.83228 -11.49538 -11.36296 -10.94271 -10.52786 -10.45108 -10.42172 -9.07660 -8.99315 -8.74572 -8.52492 -7.78120 -7.74485 -6.48520 -5.02800 1.18170 2.15878 2.64507 3.01855 3.09851 3.13925 3.29404 3.95693 4.29156 4.34793 4.92661 5.04578 5.16999 5.29340 5.39721 5.56137 5.57509 5.63037 5.72118 5.81847 5.94329 6.12806 6.37381 6.83018 6.92143 7.14478 7.26163 8.06898 8.45913 8.60452 8.68243 10.11717 10.33402 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.044974 B = 0.006054 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.434562 B = 4623.871064 C = 5103.517145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.691 5.691 3 C 0.149 3.851 4 C -0.295 4.295 5 S 0.155 5.845 6 C 0.065 3.935 7 C 0.403 3.597 8 O -0.536 6.536 9 C -0.465 4.465 10 H 0.087 0.913 11 C 0.072 3.928 12 N -0.723 5.723 13 Si 0.918 3.082 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.262 1.262 17 N -0.453 5.453 18 C 0.064 3.936 19 C -0.074 4.074 20 H 0.020 0.980 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.344 0.656 24 H 0.044 0.956 25 H 0.078 0.922 26 H 0.279 0.721 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.149 -0.110 -5.783 13.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.322 5.322 3 C 0.018 3.982 4 C -0.418 4.418 5 S 0.417 5.583 6 C -0.210 4.210 7 C 0.298 3.702 8 O -0.425 6.425 9 C -0.500 4.500 10 H 0.105 0.895 11 C -0.153 4.153 12 N -0.352 5.352 13 Si 0.741 3.259 14 H -0.186 1.186 15 H -0.201 1.201 16 H -0.186 1.186 17 N -0.169 5.169 18 C -0.077 4.077 19 C -0.133 4.133 20 H 0.039 0.961 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.162 0.838 24 H 0.062 0.938 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.753 -0.176 -3.585 12.289 hybrid contribution -0.065 0.246 -2.471 2.484 sum -11.817 0.070 -6.057 13.279 Atomic orbital electron populations 1.22195 0.87800 1.01871 1.00279 1.60446 1.07268 1.13973 1.50528 1.20050 0.87418 0.89735 1.00946 1.24972 1.00598 1.18286 0.97964 1.83856 0.99228 1.65097 1.10123 1.30797 1.00970 0.99650 0.89541 1.17352 0.81766 0.81426 0.89686 1.90625 1.83432 1.51363 1.17110 1.20865 0.90172 1.43208 0.95766 0.89496 1.26146 1.00530 0.92913 0.95676 1.69933 1.22066 1.28670 1.14524 0.86228 0.78800 0.80201 0.80640 1.18647 1.20142 1.18634 1.66842 1.14422 1.16273 1.19351 1.20260 0.88354 1.02734 0.96320 1.20277 0.99483 1.02149 0.91398 0.96148 0.91371 0.91715 0.83802 0.93771 0.90403 0.90981 0.91354 0.90752 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.70 60.07 0.64 0.91 15 2 N -0.69 -8.81 6.84 -122.42 -0.84 -9.65 15 3 C 0.15 2.04 5.54 -4.98 -0.03 2.02 15 4 C -0.30 -5.26 5.90 -35.51 -0.21 -5.47 15 5 S 0.16 3.24 22.99 -107.50 -2.47 0.77 15 6 C 0.06 1.62 7.37 -14.37 -0.11 1.52 15 7 C 0.40 11.66 6.91 -34.79 -0.24 11.42 15 8 O -0.54 -16.94 15.48 4.95 0.08 -16.86 15 9 C -0.47 -13.04 9.10 -37.52 -0.34 -13.38 15 10 H 0.09 2.33 7.63 -52.49 -0.40 1.92 15 11 C 0.07 1.92 5.50 -17.29 -0.10 1.82 15 12 N -0.72 -20.31 11.72 55.57 0.65 -19.66 15 13 Si 0.92 19.17 29.56 -169.99 -5.03 14.14 15 14 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 15 H -0.28 -5.53 7.11 56.52 0.40 -5.13 15 16 H -0.26 -5.36 7.11 56.52 0.40 -4.95 15 17 N -0.45 -10.48 10.19 -7.59 -0.08 -10.56 15 18 C 0.06 1.21 6.69 -84.37 -0.56 0.64 15 19 C -0.07 -1.04 9.76 36.00 0.35 -0.69 15 20 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 15 21 H 0.07 0.57 8.14 -51.93 -0.42 0.15 15 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 15 23 H 0.34 4.24 8.68 -39.29 -0.34 3.90 15 24 H 0.04 0.54 7.35 -51.93 -0.38 0.15 15 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 26 H 0.28 6.96 8.29 -40.82 -0.34 6.63 15 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 29 H 0.06 0.69 7.14 -51.92 -0.37 0.32 15 LS Contribution 273.52 15.07 4.12 4.12 Total: -1.00 -31.91 273.52 -7.32 -39.23 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -3.16 Total: -0.34 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -0.59 Total: -1.20 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: -0.26 Total: -39.86 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: 0.08 Total: -16.86 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -2.47 Total: 0.77 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.91 -7.32 -39.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757127028.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.400 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds