Wall clock time and date at job start Mon Mar 30 2020 03:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 110.99870 * 2 1 4 4 C 1.50697 * 109.46943 * 180.02562 * 3 2 1 5 5 S 1.71070 * 125.45655 * 269.69094 * 4 3 2 6 6 C 1.76090 * 90.33443 * 179.97438 * 5 4 3 7 7 C 1.47042 * 125.51950 * 180.02562 * 6 5 4 8 8 O 1.21964 * 119.99811 * 0.27116 * 7 6 5 9 9 C 1.41456 * 120.00371 * 180.27076 * 7 6 5 10 10 H 1.08000 * 119.99964 * 0.02562 * 9 7 6 11 11 C 1.40458 * 120.00115 * 179.97438 * 9 7 6 12 12 N 1.30478 * 119.99881 * 0.02562 * 11 9 7 13 13 Si 1.86793 * 119.99966 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47170 * 60.00485 * 13 11 9 15 15 H 1.48504 * 109.47016 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47494 * 300.00203 * 13 11 9 17 17 N 1.30932 * 108.96701 * 0.33283 * 6 5 4 18 18 C 1.30478 * 115.91277 * 359.74418 * 17 6 5 19 19 C 1.50696 * 122.14558 * 180.02562 * 18 17 6 20 20 H 1.08998 * 109.46961 * 60.00043 * 1 2 3 21 21 H 1.08996 * 109.46906 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46798 * 300.00327 * 1 2 3 23 23 H 1.00901 * 110.99869 * 236.04711 * 2 1 3 24 24 H 1.09004 * 109.47031 * 299.99620 * 3 2 1 25 25 H 1.08995 * 109.47111 * 59.99900 * 3 2 1 26 26 H 0.97003 * 119.99526 * 179.97438 * 12 11 9 27 27 H 1.09002 * 109.47209 * 269.97714 * 19 18 17 28 28 H 1.08991 * 109.47186 * 29.98452 * 19 18 17 29 29 H 1.09010 * 109.47047 * 149.98047 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5019 1.3312 -0.0006 5 16 4.4947 1.3120 1.3924 6 6 5.9339 1.2675 0.3787 7 6 7.3209 1.2321 0.8655 8 8 7.5466 1.2271 2.0641 9 6 8.3936 1.2039 -0.0562 10 1 8.1938 1.2087 -1.1175 11 6 9.7185 1.1706 0.4089 12 7 9.9598 1.1653 1.6912 13 14 11.1349 1.1326 -0.8083 14 1 11.0853 2.3456 -1.6635 15 1 12.4223 1.1001 -0.0688 16 1 11.0232 -0.0786 -1.6602 17 7 5.5692 1.2777 -0.8788 18 6 4.2836 1.3113 -1.0994 19 6 3.7093 1.3264 -2.4925 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8306 -0.5261 -0.7814 24 1 1.6460 1.8948 -0.8901 25 1 1.6460 1.8948 0.8899 26 1 10.8749 1.1419 2.0123 27 1 3.5973 2.3574 -2.8282 28 1 4.3799 0.7952 -3.1677 29 1 2.7350 0.8376 -2.4892 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757127028.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:38 Heat of formation + Delta-G solvation = -29.204042 kcal Electronic energy + Delta-G solvation = -14463.871131 eV Core-core repulsion = 11898.470173 eV Total energy + Delta-G solvation = -2565.400958 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.81087 -38.72349 -37.10682 -34.90148 -32.97072 -30.14196 -29.42898 -26.77392 -25.93130 -23.98403 -22.16222 -20.11003 -18.97222 -18.21459 -17.44669 -16.69399 -16.21595 -15.99978 -15.16696 -15.08066 -14.88053 -14.44735 -14.20466 -13.59740 -13.53031 -13.22766 -13.15826 -12.85412 -12.72535 -12.61537 -12.56387 -12.07008 -11.95214 -11.04130 -10.76138 -10.36996 -9.85844 -9.56251 -9.32304 -8.49182 -7.19643 -0.51198 0.48725 1.01362 1.33406 1.38276 1.54500 1.67011 2.20138 2.36817 3.32546 3.42889 3.47004 3.85022 4.06036 4.31661 4.40722 4.54724 4.62435 4.66976 4.75608 4.85253 4.96392 5.05426 5.11205 5.42848 5.93716 5.94581 6.34921 6.50900 6.56964 6.87154 8.03031 8.34132 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.044974 B = 0.006054 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.434562 B = 4623.871064 C = 5103.517145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.708 5.708 3 C 0.150 3.850 4 C -0.260 4.260 5 S 0.165 5.835 6 C 0.002 3.998 7 C 0.385 3.615 8 O -0.584 6.584 9 C -0.497 4.497 10 H 0.090 0.910 11 C 0.022 3.978 12 N -0.770 5.770 13 Si 1.003 2.997 14 H -0.252 1.252 15 H -0.260 1.260 16 H -0.253 1.253 17 N -0.459 5.459 18 C 0.039 3.961 19 C -0.068 4.068 20 H 0.038 0.962 21 H 0.078 0.922 22 H 0.066 0.934 23 H 0.347 0.653 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.290 0.710 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.920 -0.098 -7.930 16.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.340 5.340 3 C 0.019 3.981 4 C -0.383 4.383 5 S 0.425 5.575 6 C -0.271 4.271 7 C 0.283 3.717 8 O -0.478 6.478 9 C -0.531 4.531 10 H 0.108 0.892 11 C -0.199 4.199 12 N -0.399 5.399 13 Si 0.820 3.180 14 H -0.176 1.176 15 H -0.184 1.184 16 H -0.177 1.177 17 N -0.176 5.176 18 C -0.100 4.100 19 C -0.127 4.127 20 H 0.056 0.944 21 H 0.097 0.903 22 H 0.085 0.915 23 H 0.165 0.835 24 H 0.092 0.908 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.538 -0.166 -5.752 14.711 hybrid contribution 0.222 0.235 -1.794 1.823 sum -13.316 0.069 -7.546 15.306 Atomic orbital electron populations 1.22256 0.85506 1.02973 1.01208 1.60398 1.09420 1.13065 1.51091 1.20202 0.84046 0.91069 1.02746 1.25604 1.02632 1.14078 0.95944 1.83713 0.98143 1.64408 1.11199 1.29790 1.01097 1.05035 0.91145 1.17745 0.84107 0.80555 0.89303 1.90554 1.85097 1.53550 1.18565 1.21234 0.91546 1.44418 0.95941 0.89176 1.27361 1.03314 0.91354 0.97847 1.70031 1.23554 1.29210 1.17064 0.84990 0.74672 0.80686 0.77639 1.17618 1.18425 1.17658 1.66810 1.16970 1.15022 1.18777 1.20970 0.87060 1.02977 0.98976 1.20408 1.00607 1.03668 0.88042 0.94375 0.90289 0.91517 0.83506 0.90791 0.89699 0.89948 0.89667 0.90942 0.88999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.70 127.69 1.37 1.81 15 2 N -0.71 -15.52 6.84 -541.23 -3.70 -19.22 15 3 C 0.15 3.55 5.54 85.56 0.47 4.03 15 4 C -0.26 -8.73 5.90 24.91 0.15 -8.58 15 5 S 0.17 6.96 22.99 -56.49 -1.30 5.67 15 6 C 0.00 0.12 7.37 87.14 0.64 0.77 15 7 C 0.38 23.52 6.91 25.37 0.18 23.69 15 8 O -0.58 -39.23 15.48 -5.20 -0.08 -39.31 15 9 C -0.50 -29.11 9.10 23.60 0.21 -28.89 15 10 H 0.09 5.01 7.63 -2.91 -0.02 4.98 15 11 C 0.02 1.20 5.50 85.43 0.47 1.67 15 12 N -0.77 -44.94 11.72 21.91 0.26 -44.68 15 13 Si 1.00 39.58 29.56 68.60 2.03 41.61 15 14 H -0.25 -9.49 7.11 99.48 0.71 -8.78 15 15 H -0.26 -9.49 7.11 99.48 0.71 -8.78 15 16 H -0.25 -9.52 7.11 99.48 0.71 -8.82 15 17 N -0.46 -21.43 10.19 -177.92 -1.81 -23.24 15 18 C 0.04 1.43 6.69 41.98 0.28 1.71 15 19 C -0.07 -1.70 9.76 71.23 0.70 -1.01 15 20 H 0.04 0.46 8.14 -2.39 -0.02 0.44 15 21 H 0.08 1.04 8.14 -2.39 -0.02 1.02 15 22 H 0.07 0.99 8.14 -2.39 -0.02 0.97 15 23 H 0.35 7.28 8.68 -89.69 -0.78 6.50 15 24 H 0.07 1.40 7.35 -2.39 -0.02 1.38 15 25 H 0.08 1.95 8.14 -2.39 -0.02 1.93 15 26 H 0.29 14.89 8.29 -92.71 -0.77 14.12 15 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 15 28 H 0.07 1.86 8.14 -2.39 -0.02 1.84 15 29 H 0.09 1.69 7.14 -2.38 -0.02 1.67 15 Total: -1.00 -73.91 273.52 0.26 -73.66 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.40 Total: 10.32 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 4.47 Total: -4.80 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -5.26 Total: -87.14 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -0.08 Total: -39.31 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Atomic # 16 Polarization: 6.96 SS G_CDS: -1.30 Total: 5.67 kcal Total: -73.91 0.26 -73.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757127028.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.454 kcal (2) G-P(sol) polarization free energy of solvation -73.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds