Wall clock time and date at job start Mon Mar 30 2020 03:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35964 * 116.99871 * 2 1 4 4 C 1.38676 * 119.99060 * 359.97438 * 3 2 1 5 5 C 1.38389 * 120.30401 * 179.97438 * 4 3 2 6 6 C 1.37865 * 120.27835 * 359.78449 * 5 4 3 7 7 C 1.39759 * 119.96875 * 0.49871 * 6 5 4 8 8 C 1.47526 * 120.14694 * 179.76159 * 7 6 5 9 9 O 1.21521 * 120.00207 * 179.71823 * 8 7 6 10 10 O 1.34750 * 119.99863 * 359.44732 * 8 7 6 11 11 C 1.34863 * 116.99934 * 179.97438 * 10 8 7 12 12 H 1.07995 * 119.99900 * 359.97438 * 11 10 8 13 13 C 1.38810 * 119.99973 * 179.97438 * 11 10 8 14 14 N 1.31417 * 119.99894 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99784 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47288 * 90.00266 * 15 13 11 17 17 H 1.48503 * 109.46892 * 209.99779 * 15 13 11 18 18 H 1.48503 * 109.47550 * 329.99993 * 15 13 11 19 19 C 1.38754 * 119.98893 * 180.02562 * 3 2 1 20 20 F 1.35096 * 120.13864 * 359.97438 * 19 3 2 21 21 H 1.08990 * 109.47314 * 59.99945 * 1 2 3 22 22 H 1.08996 * 109.46554 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46474 * 299.99735 * 1 2 3 24 24 H 1.08006 * 119.84610 * 0.02562 * 4 3 2 25 25 H 1.08002 * 119.86047 * 180.02562 * 5 4 3 26 26 H 1.08004 * 120.01291 * 180.22948 * 6 5 4 27 27 H 0.97001 * 119.99801 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2908 2.3744 -0.0005 5 6 1.9123 3.6109 0.0000 6 6 3.2882 3.6973 0.0055 7 6 4.0609 2.5327 0.0001 8 6 5.5335 2.6206 0.0007 9 8 6.2028 1.6063 0.0012 10 8 6.1365 3.8256 -0.0048 11 6 7.4851 3.8355 -0.0033 12 1 8.0318 2.9042 0.0024 13 6 8.1704 5.0426 -0.0093 14 7 7.5050 6.1758 -0.0168 15 14 10.0382 5.0561 -0.0080 16 1 10.5343 5.0523 -1.4078 17 1 10.5239 6.2759 0.6859 18 1 10.5416 3.8510 0.6988 19 6 3.4319 1.2838 -0.0005 20 9 4.1703 0.1525 -0.0005 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 0.2124 2.3147 -0.0005 25 1 1.3169 4.5119 0.0000 26 1 3.7687 4.6645 0.0097 27 1 7.9839 7.0194 -0.0213 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761557744.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:04 Heat of formation + Delta-G solvation = -154.234124 kcal Electronic energy + Delta-G solvation = -16574.766449 eV Core-core repulsion = 13405.437853 eV Total energy + Delta-G solvation = -3169.328597 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.063 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.90094 -41.36057 -40.71749 -38.38944 -37.25669 -34.39402 -32.17051 -31.35166 -28.23743 -27.74484 -25.10039 -23.55270 -22.11771 -19.97549 -19.70176 -18.40140 -17.96247 -17.63467 -17.34499 -16.72021 -16.56749 -16.21206 -15.99487 -15.66272 -15.52004 -14.72791 -13.91202 -13.72049 -13.50455 -13.36924 -13.14823 -12.72897 -12.47109 -12.30162 -12.18012 -12.07892 -12.07370 -11.19311 -10.75461 -10.10834 -9.33984 -8.62077 -6.38774 -0.49843 0.12560 1.32173 1.33719 1.49399 1.67643 1.87239 2.18579 2.54011 2.69803 2.95253 3.10688 3.72584 3.77655 4.04168 4.14608 4.41610 4.46312 4.65997 4.74522 4.79769 4.97145 5.09015 5.18492 5.25979 5.51275 5.74558 6.24493 6.50780 6.81791 7.61543 8.58117 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.051022 B = 0.005926 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.650905 B = 4724.102267 C = 5257.599116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.334 6.334 3 C 0.087 3.913 4 C -0.137 4.137 5 C -0.078 4.078 6 C -0.085 4.085 7 C -0.124 4.124 8 C 0.425 3.575 9 O -0.576 6.576 10 O -0.221 6.221 11 C -0.424 4.424 12 H 0.080 0.920 13 C 0.002 3.998 14 N -0.890 5.890 15 Si 1.020 2.980 16 H -0.258 1.258 17 H -0.254 1.254 18 H -0.267 1.267 19 C 0.080 3.920 20 F -0.138 7.138 21 H 0.078 0.922 22 H 0.119 0.881 23 H 0.078 0.922 24 H 0.194 0.806 25 H 0.187 0.813 26 H 0.139 0.861 27 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.968 -3.228 0.020 17.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.249 6.249 3 C 0.040 3.960 4 C -0.155 4.155 5 C -0.095 4.095 6 C -0.104 4.104 7 C -0.127 4.127 8 C 0.275 3.725 9 O -0.475 6.475 10 O -0.129 6.129 11 C -0.499 4.499 12 H 0.097 0.903 13 C -0.199 4.199 14 N -0.526 5.526 15 Si 0.838 3.162 16 H -0.183 1.183 17 H -0.177 1.177 18 H -0.191 1.191 19 C 0.060 3.940 20 F -0.117 7.117 21 H 0.097 0.903 22 H 0.138 0.862 23 H 0.097 0.903 24 H 0.211 0.789 25 H 0.205 0.795 26 H 0.157 0.843 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.666 -3.471 0.021 17.024 hybrid contribution 1.255 -0.369 -0.003 1.308 sum -15.411 -3.840 0.017 15.882 Atomic orbital electron populations 1.23563 0.74863 1.06261 1.03425 1.86137 1.24812 1.25141 1.88788 1.18776 0.88648 0.87660 1.00868 1.21831 1.02380 0.89547 1.01767 1.21458 0.92330 0.99494 0.96249 1.21507 0.95199 0.96542 0.97128 1.19169 0.89624 0.94214 1.09644 1.21445 0.89707 0.82668 0.78688 1.90641 1.67349 1.37530 1.52004 1.83894 1.23404 1.29673 1.75922 1.21525 0.78013 0.95314 1.55049 0.90251 1.26569 1.06352 0.92746 0.94277 1.70030 1.38998 0.98330 1.45255 0.84604 0.72869 0.79007 0.79700 1.18260 1.17726 1.19114 1.17311 0.87618 0.81180 1.07929 1.91475 1.77442 1.48947 1.93826 0.90320 0.86235 0.90313 0.78929 0.79533 0.84299 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 15 2 O -0.33 -8.89 10.36 -93.15 -0.96 -9.85 15 3 C 0.09 2.59 6.69 22.50 0.15 2.74 15 4 C -0.14 -2.78 9.03 22.41 0.20 -2.58 15 5 C -0.08 -1.74 10.02 22.22 0.22 -1.52 15 6 C -0.09 -2.98 9.61 22.55 0.22 -2.76 15 7 C -0.12 -5.58 5.88 -20.08 -0.12 -5.70 15 8 C 0.43 24.43 7.83 70.27 0.55 24.98 15 9 O -0.58 -36.33 14.59 19.77 0.29 -36.04 15 10 O -0.22 -13.69 8.99 11.06 0.10 -13.59 15 11 C -0.42 -26.73 9.65 67.96 0.66 -26.07 15 12 H 0.08 5.15 6.86 -2.91 -0.02 5.13 15 13 C 0.00 0.13 5.49 84.89 0.47 0.60 15 14 N -0.89 -51.91 13.67 21.63 0.30 -51.62 15 15 Si 1.02 43.87 29.55 68.60 2.03 45.90 15 16 H -0.26 -10.48 7.11 99.48 0.71 -9.78 15 17 H -0.25 -9.88 7.11 99.48 0.71 -9.18 15 18 H -0.27 -11.44 7.11 99.48 0.71 -10.73 15 19 C 0.08 3.32 7.30 22.78 0.17 3.48 15 20 F -0.14 -6.66 15.39 44.97 0.69 -5.97 15 21 H 0.08 0.66 7.66 -2.39 -0.02 0.65 15 22 H 0.12 1.05 8.14 -2.39 -0.02 1.03 15 23 H 0.08 0.66 7.66 -2.39 -0.02 0.65 15 24 H 0.19 1.83 6.27 -2.91 -0.02 1.82 15 25 H 0.19 2.41 8.06 -2.91 -0.02 2.38 15 26 H 0.14 5.21 7.61 -2.91 -0.02 5.18 15 27 H 0.28 14.81 8.31 -92.71 -0.77 14.04 15 Total: -1.00 -82.81 255.74 7.27 -75.53 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: 1.21 Total: 1.19 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 3.63 Total: -5.56 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.30 Total: -51.62 kcal Atomic # 8 Polarization: -58.90 SS G_CDS: -0.58 Total: -59.48 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 0.69 Total: -5.97 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -82.81 7.27 -75.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761557744.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.700 kcal (2) G-P(sol) polarization free energy of solvation -82.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds