Wall clock time and date at job start Mon Mar 30 2020 04:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31349 * 124.07511 * 2 1 4 4 N 1.27330 * 120.02021 * 180.34789 * 3 2 1 5 5 S 1.56631 * 109.77214 * 359.69019 * 4 3 2 6 6 C 1.38344 * 124.07231 * 179.79379 * 2 1 3 7 7 C 1.46938 * 128.47763 * 359.97438 * 6 2 1 8 8 N 1.29907 * 120.00397 * 179.70542 * 7 6 2 9 9 N 1.40104 * 120.00354 * 180.02562 * 8 7 6 10 10 C 1.46497 * 120.00312 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.46733 * 330.00215 * 10 9 8 12 12 C 1.53000 * 109.47145 * 89.99780 * 10 9 8 13 13 C 1.50694 * 109.47115 * 209.99853 * 10 9 8 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 10 9 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 H 1.08995 * 109.47645 * 270.20659 * 1 2 3 22 22 H 1.08997 * 109.47072 * 30.21149 * 1 2 3 23 23 H 1.09006 * 109.47438 * 150.20508 * 1 2 3 24 24 H 1.08005 * 119.99588 * 359.70727 * 7 6 2 25 25 H 0.97006 * 119.99719 * 359.97438 * 9 8 7 26 26 H 1.09000 * 109.47156 * 59.99824 * 12 10 9 27 27 H 1.08997 * 109.47359 * 180.02562 * 12 10 9 28 28 H 1.09007 * 109.47356 * 300.00099 * 12 10 9 29 29 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2429 1.0880 0.0000 4 7 3.5130 0.9979 -0.0067 5 16 3.9373 -0.5098 -0.0060 6 6 2.2821 -1.1459 0.0041 7 6 1.8414 -2.5477 0.0097 8 7 2.7198 -3.5048 0.0073 9 7 2.2997 -4.8413 0.0120 10 6 3.2903 -5.9206 0.0087 11 1 4.1888 -5.5874 -0.5106 12 6 3.6429 -6.2936 1.4500 13 6 2.7196 -7.1240 -0.6963 14 1 1.7190 -7.0887 -1.1011 15 6 3.4746 -8.2707 -0.8237 16 7 4.6930 -8.3140 -0.3304 17 14 2.7670 -9.7626 -1.6971 18 1 2.0702 -10.6285 -0.7122 19 1 1.8022 -9.3175 -2.7346 20 1 3.8660 -10.5279 -2.3388 21 1 -0.3634 0.0037 1.0276 22 1 -0.3633 0.8881 -0.5171 23 1 -0.3634 -0.8918 -0.5107 24 1 0.7872 -2.7823 0.0158 25 1 1.3528 -5.0520 0.0175 26 1 2.7443 -6.6267 1.9694 27 1 4.3802 -7.0963 1.4476 28 1 4.0557 -5.4232 1.9601 29 1 5.2240 -9.1208 -0.4197 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814225885.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:26 Heat of formation + Delta-G solvation = 102.143301 kcal Electronic energy + Delta-G solvation = -14109.812139 eV Core-core repulsion = 11582.399580 eV Total energy + Delta-G solvation = -2527.412559 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 8.26 seconds Orbital eigenvalues (eV) -40.46244 -36.84846 -34.52324 -33.11248 -31.40071 -28.78671 -27.00716 -26.24170 -25.32589 -22.33615 -20.51960 -19.80221 -18.33934 -16.97184 -15.93624 -15.63991 -15.45520 -14.88494 -13.86781 -13.46292 -13.03912 -12.90706 -12.80028 -12.59540 -12.11704 -11.71386 -11.35712 -11.18058 -11.04671 -10.83424 -10.42593 -10.34285 -9.95523 -9.83486 -9.49306 -9.47281 -9.14848 -8.62979 -7.10296 -6.26335 -4.35786 0.16055 1.22606 1.94454 2.13781 3.00626 3.16652 3.22720 3.24997 3.41389 4.18052 4.25225 4.80523 5.03006 5.07223 5.38420 5.49764 5.63571 5.78779 6.01878 6.35647 6.70321 6.83658 6.96716 7.40112 7.59608 7.66186 7.92751 7.99027 8.08806 8.68989 8.94901 9.31553 10.79595 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.045289 B = 0.004634 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.101220 B = 6040.532705 C = 6359.105327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.011 3.989 3 N -0.244 5.244 4 N -0.304 5.304 5 S 0.390 5.610 6 C -0.130 4.130 7 C 0.009 3.991 8 N -0.176 5.176 9 N -0.599 5.599 10 C 0.292 3.708 11 H 0.046 0.954 12 C -0.152 4.152 13 C -0.535 4.535 14 H 0.062 0.938 15 C 0.069 3.931 16 N -0.884 5.884 17 Si 0.905 3.095 18 H -0.278 1.278 19 H -0.273 1.273 20 H -0.284 1.284 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.124 0.876 25 H 0.374 0.626 26 H 0.028 0.972 27 H 0.093 0.907 28 H 0.014 0.986 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.984 10.139 1.191 11.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.138 4.138 3 N -0.110 5.110 4 N -0.283 5.283 5 S 0.525 5.475 6 C -0.269 4.269 7 C -0.198 4.198 8 N 0.006 4.994 9 N -0.336 5.336 10 C 0.191 3.809 11 H 0.064 0.936 12 C -0.211 4.211 13 C -0.575 4.575 14 H 0.080 0.920 15 C -0.135 4.135 16 N -0.521 5.521 17 Si 0.732 3.268 18 H -0.204 1.204 19 H -0.198 1.198 20 H -0.209 1.209 21 H 0.097 0.903 22 H 0.097 0.903 23 H 0.098 0.902 24 H 0.141 0.859 25 H 0.211 0.789 26 H 0.047 0.953 27 H 0.112 0.888 28 H 0.033 0.967 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.054 10.814 1.191 11.300 hybrid contribution -2.883 -1.595 -0.388 3.318 sum -5.937 9.219 0.804 10.994 Atomic orbital electron populations 1.20194 0.85055 1.03719 1.03295 1.22638 0.99421 0.85862 1.05856 1.70456 0.97598 1.28393 1.14565 1.78689 1.08874 1.16129 1.24582 1.82872 1.10832 0.99953 1.53856 1.25917 0.96946 0.96994 1.07084 1.22073 0.96241 0.87426 1.14104 1.74016 1.30643 0.92595 1.02177 1.49281 1.08965 0.97731 1.77644 1.18719 0.87474 0.81279 0.93446 0.93566 1.22220 1.01076 1.00466 0.97324 1.21181 1.01601 0.97129 1.37563 0.92018 1.24858 0.94750 0.98627 0.95275 1.69879 1.08948 1.28751 1.44519 0.86392 0.78714 0.82040 0.79661 1.20439 1.19821 1.20923 0.90275 0.90265 0.90156 0.85885 0.78890 0.95296 0.88850 0.96682 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.22 36.01 0.37 -0.21 15 2 C 0.01 0.15 7.00 -82.76 -0.58 -0.43 15 3 N -0.24 -3.78 11.55 33.45 0.39 -3.39 15 4 N -0.30 -4.82 12.50 60.35 0.75 -4.06 15 5 S 0.39 5.68 23.58 -107.50 -2.54 3.14 15 6 C -0.13 -1.88 6.80 -36.02 -0.24 -2.13 15 7 C 0.01 0.14 10.66 -14.84 -0.16 -0.02 15 8 N -0.18 -3.24 11.43 32.05 0.37 -2.87 15 9 N -0.60 -11.98 6.10 -5.88 -0.04 -12.01 15 10 C 0.29 6.94 3.23 -69.09 -0.22 6.71 15 11 H 0.05 1.22 8.14 -51.93 -0.42 0.80 15 12 C -0.15 -3.49 9.29 37.16 0.35 -3.14 15 13 C -0.54 -13.54 8.74 -34.44 -0.30 -13.84 15 14 H 0.06 1.52 7.79 -52.49 -0.41 1.11 15 15 C 0.07 1.76 5.30 -17.82 -0.09 1.67 15 16 N -0.88 -23.56 11.32 55.43 0.63 -22.94 15 17 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 15 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 21 H 0.08 0.63 8.14 -51.93 -0.42 0.21 15 22 H 0.08 0.66 8.14 -51.93 -0.42 0.24 15 23 H 0.08 0.64 7.56 -51.93 -0.39 0.25 15 24 H 0.12 1.53 7.61 -52.48 -0.40 1.14 15 25 H 0.37 6.75 8.58 -182.59 -1.57 5.18 15 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 15 27 H 0.09 2.34 6.07 -51.93 -0.32 2.02 15 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 15 29 H 0.27 6.75 8.31 -40.82 -0.34 6.41 15 LS Contribution 275.23 15.07 4.15 4.15 Total: -1.00 -27.60 275.23 -6.53 -34.12 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -4.33 Total: 0.41 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -0.89 Total: -11.40 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 2.10 Total: -45.28 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 5.68 SS G_CDS: -2.54 Total: 3.14 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.60 -6.53 -34.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814225885.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.268 kcal (2) G-P(sol) polarization free energy of solvation -27.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.26 seconds