Wall clock time and date at job start Mon Mar 30 2020 04:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31349 * 124.07511 * 2 1 4 4 N 1.27330 * 120.02021 * 180.34789 * 3 2 1 5 5 S 1.56631 * 109.77214 * 359.69019 * 4 3 2 6 6 C 1.38344 * 124.07231 * 179.79379 * 2 1 3 7 7 C 1.46938 * 128.47763 * 359.97438 * 6 2 1 8 8 N 1.29907 * 120.00397 * 179.70542 * 7 6 2 9 9 N 1.40104 * 120.00354 * 180.02562 * 8 7 6 10 10 C 1.46497 * 120.00312 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.46733 * 330.00215 * 10 9 8 12 12 C 1.53000 * 109.47145 * 89.99780 * 10 9 8 13 13 C 1.50694 * 109.47115 * 209.99853 * 10 9 8 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 10 9 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 H 1.08995 * 109.47645 * 270.20659 * 1 2 3 22 22 H 1.08997 * 109.47072 * 30.21149 * 1 2 3 23 23 H 1.09006 * 109.47438 * 150.20508 * 1 2 3 24 24 H 1.08005 * 119.99588 * 359.70727 * 7 6 2 25 25 H 0.97006 * 119.99719 * 359.97438 * 9 8 7 26 26 H 1.09000 * 109.47156 * 59.99824 * 12 10 9 27 27 H 1.08997 * 109.47359 * 180.02562 * 12 10 9 28 28 H 1.09007 * 109.47356 * 300.00099 * 12 10 9 29 29 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2429 1.0880 0.0000 4 7 3.5130 0.9979 -0.0067 5 16 3.9373 -0.5098 -0.0060 6 6 2.2821 -1.1459 0.0041 7 6 1.8414 -2.5477 0.0097 8 7 2.7198 -3.5048 0.0073 9 7 2.2997 -4.8413 0.0120 10 6 3.2903 -5.9206 0.0087 11 1 4.1888 -5.5874 -0.5106 12 6 3.6429 -6.2936 1.4500 13 6 2.7196 -7.1240 -0.6963 14 1 1.7190 -7.0887 -1.1011 15 6 3.4746 -8.2707 -0.8237 16 7 4.6930 -8.3140 -0.3304 17 14 2.7670 -9.7626 -1.6971 18 1 2.0702 -10.6285 -0.7122 19 1 1.8022 -9.3175 -2.7346 20 1 3.8660 -10.5279 -2.3388 21 1 -0.3634 0.0037 1.0276 22 1 -0.3633 0.8881 -0.5171 23 1 -0.3634 -0.8918 -0.5107 24 1 0.7872 -2.7823 0.0158 25 1 1.3528 -5.0520 0.0175 26 1 2.7443 -6.6267 1.9694 27 1 4.3802 -7.0963 1.4476 28 1 4.0557 -5.4232 1.9601 29 1 5.2240 -9.1208 -0.4197 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814225885.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:17 Heat of formation + Delta-G solvation = 84.048055 kcal Electronic energy + Delta-G solvation = -14110.596808 eV Core-core repulsion = 11582.399580 eV Total energy + Delta-G solvation = -2528.197228 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.074 amu Computer time = 10.46 seconds Orbital eigenvalues (eV) -41.63180 -38.29317 -36.14194 -34.41884 -33.00495 -30.16377 -28.08657 -27.60919 -27.20289 -23.65988 -22.23793 -21.00732 -19.53511 -18.64949 -17.28596 -17.10204 -16.78725 -16.42846 -15.35313 -14.70640 -14.52827 -14.36139 -13.78999 -13.57309 -13.47146 -13.27651 -12.92441 -12.77846 -12.60572 -12.38265 -12.24385 -12.10816 -11.25907 -11.09940 -10.98280 -10.76405 -10.60451 -10.51055 -8.56609 -8.17913 -6.34560 -1.04707 0.08996 0.75469 0.98380 1.44895 1.45720 1.55442 1.80792 1.97992 2.44575 3.12051 3.12747 3.68931 3.86676 4.42516 4.60005 4.74646 4.84802 4.89191 4.99403 5.09935 5.15381 5.29319 5.52349 5.73279 5.85752 6.12408 6.33963 6.81462 6.82409 7.36687 7.59761 8.87114 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.045289 B = 0.004634 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.101220 B = 6040.532705 C = 6359.105327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.035 3.965 3 N -0.265 5.265 4 N -0.317 5.317 5 S 0.401 5.599 6 C -0.156 4.156 7 C 0.054 3.946 8 N -0.224 5.224 9 N -0.617 5.617 10 C 0.304 3.696 11 H 0.007 0.993 12 C -0.139 4.139 13 C -0.547 4.547 14 H 0.066 0.934 15 C 0.020 3.980 16 N -0.914 5.914 17 Si 0.968 3.032 18 H -0.272 1.272 19 H -0.268 1.268 20 H -0.285 1.285 21 H 0.098 0.902 22 H 0.091 0.909 23 H 0.099 0.901 24 H 0.157 0.843 25 H 0.382 0.618 26 H 0.033 0.967 27 H 0.069 0.931 28 H 0.020 0.980 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.075 10.870 0.999 13.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.115 4.115 3 N -0.131 5.131 4 N -0.296 5.296 5 S 0.536 5.464 6 C -0.296 4.296 7 C -0.156 4.156 8 N -0.039 5.039 9 N -0.355 5.355 10 C 0.200 3.800 11 H 0.025 0.975 12 C -0.198 4.198 13 C -0.586 4.586 14 H 0.084 0.916 15 C -0.180 4.180 16 N -0.552 5.552 17 Si 0.793 3.207 18 H -0.198 1.198 19 H -0.193 1.193 20 H -0.211 1.211 21 H 0.117 0.883 22 H 0.109 0.891 23 H 0.118 0.882 24 H 0.174 0.826 25 H 0.221 0.779 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.039 0.961 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.151 11.563 1.002 12.698 hybrid contribution -2.281 -1.502 -0.321 2.750 sum -7.432 10.061 0.680 12.527 Atomic orbital electron populations 1.20484 0.81849 1.05332 1.05021 1.23307 1.01103 0.84672 1.02373 1.70526 0.97551 1.29358 1.15635 1.78646 1.09498 1.16982 1.24426 1.82895 1.11468 0.99414 1.52608 1.26014 0.96926 0.97118 1.09580 1.22528 0.97556 0.86842 1.08661 1.74009 1.31905 0.92291 1.05714 1.48600 1.08242 0.97753 1.80946 1.18231 0.86894 0.82040 0.92811 0.97512 1.22042 1.00520 0.99766 0.97497 1.21514 1.01782 0.97854 1.37487 0.91603 1.25671 0.95034 1.01345 0.95973 1.70009 1.10104 1.29406 1.45669 0.85405 0.77929 0.78709 0.78653 1.19778 1.19256 1.21053 0.88310 0.89063 0.88205 0.82594 0.77930 0.94760 0.91261 0.96087 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.22 71.24 0.73 -0.23 15 2 C 0.03 0.83 7.00 42.66 0.30 1.13 15 3 N -0.27 -7.65 11.55 -48.07 -0.56 -8.20 15 4 N -0.32 -9.62 12.50 37.02 0.46 -9.15 15 5 S 0.40 11.26 23.58 -56.49 -1.33 9.93 15 6 C -0.16 -4.17 6.80 24.58 0.17 -4.00 15 7 C 0.05 1.49 10.66 87.26 0.93 2.42 15 8 N -0.22 -8.10 11.43 -52.50 -0.60 -8.70 15 9 N -0.62 -24.53 6.10 -172.53 -1.05 -25.58 15 10 C 0.30 14.71 3.23 44.24 0.14 14.85 15 11 H 0.01 0.38 8.14 -2.39 -0.02 0.37 15 12 C -0.14 -6.52 9.29 71.98 0.67 -5.85 15 13 C -0.55 -27.87 8.74 25.60 0.22 -27.64 15 14 H 0.07 3.21 7.79 -2.91 -0.02 3.19 15 15 C 0.02 1.05 5.30 84.66 0.45 1.50 15 16 N -0.91 -49.75 11.32 21.45 0.24 -49.51 15 17 Si 0.97 40.67 29.54 68.60 2.03 42.69 15 18 H -0.27 -11.09 7.11 99.48 0.71 -10.39 15 19 H -0.27 -10.93 7.11 99.48 0.71 -10.22 15 20 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 21 H 0.10 1.13 8.14 -2.39 -0.02 1.11 15 22 H 0.09 1.16 8.14 -2.39 -0.02 1.14 15 23 H 0.10 1.10 7.56 -2.38 -0.02 1.08 15 24 H 0.16 3.24 7.61 -2.91 -0.02 3.22 15 25 H 0.38 13.42 8.58 -213.31 -1.83 11.59 15 26 H 0.03 1.51 8.14 -2.39 -0.02 1.49 15 27 H 0.07 3.57 6.07 -2.39 -0.01 3.56 15 28 H 0.02 0.90 8.14 -2.38 -0.02 0.88 15 29 H 0.27 13.77 8.31 -92.71 -0.77 13.00 15 Total: -1.00 -59.68 275.23 2.15 -57.53 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -0.65 Total: 8.80 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: 3.61 Total: -17.82 kcal Atomic # 7 Polarization: -99.64 SS G_CDS: -1.50 Total: -101.14 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.69 kcal Atomic # 16 Polarization: 11.26 SS G_CDS: -1.33 Total: 9.93 kcal Total: -59.68 2.15 -57.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814225885.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.583 kcal (2) G-P(sol) polarization free energy of solvation -59.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.46 seconds