Wall clock time and date at job start Mon Mar 30 2020 04:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.47219 * 2 1 4 4 C 1.50703 * 109.47339 * 119.99952 * 2 1 3 5 5 H 1.07999 * 120.00071 * 119.99478 * 4 2 1 6 6 C 1.37874 * 119.99749 * 300.00162 * 4 2 1 7 7 N 1.31508 * 120.00191 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99773 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47237 * 60.00328 * 8 6 4 10 10 H 1.48502 * 109.46967 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47226 * 299.99710 * 8 6 4 12 12 C 1.50708 * 109.47274 * 239.99910 * 2 1 3 13 13 O 1.21647 * 119.99950 * 239.99976 * 12 2 1 14 14 N 1.32669 * 119.99611 * 60.00317 * 12 2 1 15 15 C 1.33482 * 119.99786 * 180.02562 * 14 12 2 16 16 S 1.70829 * 125.05829 * 359.96912 * 15 14 12 17 17 C 1.75887 * 91.09213 * 180.02562 * 16 15 14 18 18 C 1.31625 * 109.44655 * 359.73282 * 17 16 15 19 19 N 1.34225 * 125.05985 * 179.97438 * 15 14 12 20 20 C 1.46499 * 122.55346 * 359.97438 * 19 15 14 21 21 H 1.09000 * 109.47226 * 60.00013 * 1 2 3 22 22 H 1.09003 * 109.47219 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47303 * 300.00276 * 1 2 3 24 24 H 0.96997 * 120.00459 * 179.97438 * 7 6 4 25 25 H 1.08001 * 125.27760 * 180.02562 * 17 16 15 26 26 H 1.08003 * 122.65988 * 180.26689 * 18 17 16 27 27 H 1.09002 * 109.47391 * 89.99687 * 20 19 15 28 28 H 1.09001 * 109.46813 * 329.99743 * 20 19 15 29 29 H 1.09004 * 109.47041 * 209.99870 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.8063 -1.1208 4.0082 10 1 1.8269 -0.4198 5.2204 11 1 1.8258 -2.5201 4.0077 12 6 2.0323 -0.7105 -1.2305 13 8 2.7317 -1.6995 -1.1189 14 7 1.7118 -0.2571 -2.4354 15 6 2.1563 -0.8866 -3.5253 16 16 3.1426 -2.2814 -3.5192 17 6 3.1656 -2.3140 -5.2776 18 6 2.4502 -1.3123 -5.7438 19 7 1.8950 -0.5179 -4.7892 20 6 1.0700 0.6478 -5.1157 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 0.7088 1.1614 3.4843 25 1 3.6824 -3.0454 -5.8812 26 1 2.3171 -1.1334 -6.8006 27 1 1.7042 1.5306 -5.1969 28 1 0.3316 0.8021 -4.3289 29 1 0.5604 0.4781 -6.0642 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825059426.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:18 Heat of formation + Delta-G solvation = 25.780204 kcal Electronic energy + Delta-G solvation = -14848.727461 eV Core-core repulsion = 12285.710798 eV Total energy + Delta-G solvation = -2563.016663 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.40163 -38.64688 -33.74783 -33.21300 -31.64830 -30.34519 -27.48469 -24.98498 -24.52025 -22.50311 -20.05251 -19.62902 -17.31743 -16.51023 -16.06766 -15.87427 -15.27046 -14.83699 -14.01636 -13.90084 -13.80359 -13.11753 -12.56634 -12.43846 -12.26767 -11.49296 -11.01160 -10.79914 -10.65597 -10.45435 -10.39026 -10.05370 -9.90703 -9.28049 -9.24034 -8.75752 -8.43166 -8.19175 -7.43816 -5.90090 -3.93457 1.20084 1.44838 1.95126 2.10449 2.67572 3.43253 3.45040 3.50899 4.22246 4.49038 4.61875 4.83870 5.11085 5.23641 5.41313 5.42502 5.57201 5.62524 6.42071 6.62318 6.91881 6.97046 7.21169 7.22516 7.74483 7.80165 7.98695 8.18776 8.44569 9.12128 9.30281 9.70481 11.17351 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.044314 B = 0.006498 C = 0.005771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.695912 B = 4308.045281 C = 4850.527087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.053 3.947 3 H 0.055 0.945 4 C -0.504 4.504 5 H 0.072 0.928 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.489 3.511 13 O -0.532 6.532 14 N -0.613 5.613 15 C 0.338 3.662 16 S 0.210 5.790 17 C -0.326 4.326 18 C 0.065 3.935 19 N -0.483 5.483 20 C 0.081 3.919 21 H 0.020 0.980 22 H 0.023 0.977 23 H 0.089 0.911 24 H 0.260 0.740 25 H 0.176 0.824 26 H 0.179 0.821 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.027 -2.135 -18.625 18.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.033 3.967 3 H 0.072 0.928 4 C -0.543 4.543 5 H 0.090 0.910 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.278 3.722 13 O -0.413 6.413 14 N -0.370 5.370 15 C -0.033 4.033 16 S 0.456 5.544 17 C -0.466 4.466 18 C -0.065 4.065 19 N -0.180 5.180 20 C -0.063 4.063 21 H 0.039 0.961 22 H 0.042 0.958 23 H 0.107 0.893 24 H 0.070 0.930 25 H 0.193 0.807 26 H 0.196 0.804 27 H 0.091 0.909 28 H 0.117 0.883 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.333 -2.561 -17.240 17.480 hybrid contribution 0.020 0.001 -0.345 0.346 sum 1.353 -2.561 -17.585 17.822 Atomic orbital electron populations 1.21596 0.96266 0.99197 1.00984 1.18507 0.94259 0.96476 0.87501 0.92768 1.21187 1.30964 1.12768 0.89363 0.91027 1.24935 0.95206 0.95089 0.98960 1.69884 1.37171 1.23109 1.23414 0.86537 0.79223 0.79708 0.81815 1.20265 1.21422 1.20267 1.22712 0.77629 0.83194 0.88692 1.90392 1.36638 1.27337 1.86966 1.69180 1.35296 1.35116 0.97379 1.24534 0.93860 0.95129 0.89805 1.86200 1.48724 1.23959 0.95474 1.25923 1.10473 1.05599 1.04565 1.20661 0.97994 0.92680 0.95201 1.43602 1.45091 1.26791 1.02540 1.22064 0.95450 0.85873 1.02877 0.96076 0.95813 0.89282 0.93028 0.80685 0.80375 0.90865 0.88271 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 8.88 37.15 0.33 -2.85 15 2 C 0.05 1.48 2.71 -92.92 -0.25 1.23 15 3 H 0.05 1.58 8.14 -51.93 -0.42 1.16 15 4 C -0.50 -15.15 8.37 -34.44 -0.29 -15.44 15 5 H 0.07 2.23 6.75 -52.49 -0.35 1.87 15 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 15 7 N -0.90 -26.50 11.32 55.43 0.63 -25.88 15 8 Si 0.90 22.64 29.54 -169.99 -5.02 17.62 15 9 H -0.28 -6.93 7.11 56.52 0.40 -6.53 15 10 H -0.29 -7.08 7.11 56.52 0.40 -6.67 15 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 15 12 C 0.49 12.57 7.03 -11.91 -0.08 12.49 15 13 O -0.53 -14.22 12.71 5.24 0.07 -14.15 15 14 N -0.61 -13.42 9.66 -13.83 -0.13 -13.55 15 15 C 0.34 6.09 7.65 -88.56 -0.68 5.41 15 16 S 0.21 3.48 19.93 -107.50 -2.14 1.34 15 17 C -0.33 -3.55 11.17 28.87 0.32 -3.23 15 18 C 0.07 0.64 10.68 -17.55 -0.19 0.45 15 19 N -0.48 -6.30 3.01 -127.15 -0.38 -6.69 15 20 C 0.08 0.80 10.70 59.85 0.64 1.44 15 21 H 0.02 0.48 8.05 -51.93 -0.42 0.06 15 22 H 0.02 0.60 8.14 -51.93 -0.42 0.17 15 23 H 0.09 2.46 6.07 -51.93 -0.32 2.15 15 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 25 H 0.18 1.35 8.06 -52.49 -0.42 0.93 15 26 H 0.18 0.93 8.06 -52.48 -0.42 0.51 15 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 15 28 H 0.10 1.17 7.75 -51.93 -0.40 0.76 15 29 H 0.08 0.49 8.09 -51.93 -0.42 0.07 15 LS Contribution 265.53 15.07 4.00 4.00 Total: -1.00 -34.61 265.53 -6.43 -41.05 By element: Atomic # 1 Polarization: -1.70 SS G_CDS: -3.16 Total: -4.86 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -0.29 Total: 1.12 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.11 Total: -46.12 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.07 Total: -14.15 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -2.14 Total: 1.34 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -34.61 -6.43 -41.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825059426.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.827 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds