Wall clock time and date at job start Mon Mar 30 2020 03:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37578 * 121.02921 * 2 1 4 4 C 1.38383 * 111.26184 * 180.19237 * 3 2 1 5 5 C 1.47109 * 127.99378 * 179.82469 * 4 3 2 6 6 O 1.21632 * 119.99655 * 6.67954 * 5 4 3 7 7 N 1.34774 * 119.99809 * 186.67617 * 5 4 3 8 8 C 1.46501 * 120.00043 * 5.74536 * 7 5 4 9 9 C 1.46495 * 119.99872 * 185.75387 * 7 5 4 10 10 C 1.50701 * 109.46949 * 269.99613 * 9 7 5 11 11 H 1.08005 * 120.00053 * 0.02562 * 10 9 7 12 12 C 1.37873 * 120.00035 * 179.97438 * 10 9 7 13 13 N 1.31519 * 120.00067 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00199 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47389 * 89.99908 * 14 12 10 16 16 H 1.48500 * 109.47427 * 209.99945 * 14 12 10 17 17 H 1.48507 * 109.47110 * 329.99786 * 14 12 10 18 18 S 1.77065 * 104.00899 * 359.57321 * 4 3 2 19 19 N 1.29558 * 121.02183 * 179.68931 * 2 1 3 20 20 H 1.08998 * 109.46958 * 270.29033 * 1 2 3 21 21 H 1.08996 * 109.46873 * 30.28989 * 1 2 3 22 22 H 1.09003 * 109.47386 * 150.29025 * 1 2 3 23 23 H 1.08003 * 124.36381 * 0.02859 * 3 2 1 24 24 H 1.08998 * 109.47422 * 275.49812 * 8 7 5 25 25 H 1.08999 * 109.47008 * 35.50032 * 8 7 5 26 26 H 1.09005 * 109.46720 * 155.49707 * 8 7 5 27 27 H 1.08998 * 109.47577 * 29.99343 * 9 7 5 28 28 H 1.08995 * 109.47317 * 149.99926 * 9 7 5 29 29 H 0.97002 * 120.00484 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2162 1.1789 0.0000 4 6 3.5799 0.9442 -0.0043 5 6 4.6690 1.9331 -0.0093 6 8 4.4163 3.1166 0.1126 7 7 5.9468 1.5276 -0.1488 8 6 6.2426 0.1189 -0.4213 9 6 7.0397 2.4955 -0.0278 10 6 7.3431 3.0825 -1.3822 11 1 6.7779 2.7664 -2.2467 12 6 8.3414 4.0237 -1.5178 13 7 8.6058 4.5363 -2.6997 14 14 9.3184 4.5708 -0.0227 15 1 10.5073 3.6958 0.1392 16 1 9.7600 5.9766 -0.2072 17 1 8.4647 4.4752 1.1887 18 16 3.7109 -0.8216 0.0050 19 7 2.1747 -1.1103 0.0060 20 1 -0.3633 0.0052 1.0276 21 1 -0.3633 0.8873 -0.5183 22 1 -0.3634 -0.8926 -0.5093 23 1 1.7665 2.1609 0.0004 24 1 6.2712 -0.4346 0.5173 25 1 5.4676 -0.2972 -1.0650 26 1 7.2092 0.0403 -0.9190 27 1 6.7458 3.2920 0.6557 28 1 7.9275 1.9947 0.3582 29 1 9.3079 5.1988 -2.7951 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885959453.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:44 Heat of formation + Delta-G solvation = 14.157744 kcal Electronic energy + Delta-G solvation = -14713.896963 eV Core-core repulsion = 12150.376313 eV Total energy + Delta-G solvation = -2563.520650 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 5.01 seconds Orbital eigenvalues (eV) -39.66392 -38.77186 -35.10623 -32.69038 -31.44314 -30.10030 -28.67195 -26.35856 -24.49672 -22.07842 -20.49506 -19.05852 -17.99449 -17.01765 -16.18741 -15.61676 -15.28722 -14.64430 -14.35562 -13.82662 -13.29116 -13.04691 -12.71095 -12.64041 -12.48239 -12.39879 -12.17680 -11.71911 -11.17599 -10.96416 -10.63822 -10.36601 -10.17291 -9.63262 -9.51176 -9.36274 -8.63760 -8.52652 -7.87974 -6.12638 -4.12530 0.47829 1.39868 2.00627 2.28694 3.23894 3.31913 3.35830 3.49106 3.66870 4.35674 4.67323 4.94831 5.13360 5.21890 5.24792 5.35907 5.44725 5.60917 5.62975 5.77607 5.98533 6.06118 6.54260 6.68702 6.85307 7.13620 7.53178 7.99879 8.39452 8.71228 8.90935 9.46183 11.00618 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.048049 B = 0.006066 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.604418 B = 4614.581087 C = 4829.860655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.086 3.914 3 C -0.121 4.121 4 C -0.246 4.246 5 C 0.582 3.418 6 O -0.518 6.518 7 N -0.587 5.587 8 C 0.068 3.932 9 C 0.218 3.782 10 C -0.532 4.532 11 H 0.076 0.924 12 C 0.073 3.927 13 N -0.895 5.895 14 Si 0.875 3.125 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.263 1.263 18 S 0.420 5.580 19 N -0.552 5.552 20 H 0.076 0.924 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.172 0.828 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.044 0.956 28 H 0.032 0.968 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.178 -11.381 6.602 16.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.156 4.156 4 C -0.380 4.380 5 C 0.366 3.634 6 O -0.395 6.395 7 N -0.318 5.318 8 C -0.078 4.078 9 C 0.098 3.902 10 C -0.571 4.571 11 H 0.094 0.906 12 C -0.129 4.129 13 N -0.533 5.533 14 Si 0.701 3.299 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.188 1.188 18 S 0.578 5.422 19 N -0.382 5.382 20 H 0.095 0.905 21 H 0.097 0.903 22 H 0.093 0.907 23 H 0.190 0.810 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.115 0.885 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.391 -12.689 6.589 17.106 hybrid contribution -0.317 1.899 0.506 1.991 sum -9.708 -10.789 7.095 16.155 Atomic orbital electron populations 1.20508 0.87160 1.03512 1.03070 1.20845 0.99133 0.86575 1.02114 1.21857 0.91420 1.00573 1.01769 1.27146 0.98640 1.01075 1.11138 1.16720 0.81456 0.86644 0.78536 1.90808 1.82662 1.16195 1.49813 1.47715 1.06131 1.09338 1.68643 1.21917 1.03229 0.82099 1.00526 1.19774 0.83684 0.87929 0.98858 1.21301 1.18785 1.23676 0.93304 0.90608 1.24853 0.96751 0.95457 0.95867 1.69893 1.31736 1.29041 1.22658 0.86866 0.80597 0.78615 0.83788 1.20001 1.20851 1.18797 1.82014 1.02744 0.97467 1.59984 1.71912 1.09740 1.32025 1.24488 0.90497 0.90319 0.90725 0.81032 0.92467 0.92070 0.88537 0.93840 0.95022 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.23 36.01 0.37 -0.39 15 2 C 0.09 1.14 6.64 -83.79 -0.56 0.58 15 3 C -0.12 -1.78 10.11 -39.77 -0.40 -2.18 15 4 C -0.25 -4.11 6.42 -35.93 -0.23 -4.34 15 5 C 0.58 12.20 7.64 -12.66 -0.10 12.11 15 6 O -0.52 -12.90 16.61 5.25 0.09 -12.81 15 7 N -0.59 -12.01 2.86 -184.36 -0.53 -12.53 15 8 C 0.07 1.03 8.92 59.85 0.53 1.56 15 9 C 0.22 5.18 4.16 -5.20 -0.02 5.16 15 10 C -0.53 -15.06 9.94 -34.44 -0.34 -15.41 15 11 H 0.08 2.37 8.06 -52.48 -0.42 1.94 15 12 C 0.07 2.11 5.47 -17.82 -0.10 2.01 15 13 N -0.90 -27.31 13.96 55.43 0.77 -26.54 15 14 Si 0.87 21.02 27.47 -169.99 -4.67 16.36 15 15 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 17 H -0.26 -6.15 6.54 56.52 0.37 -5.78 15 18 S 0.42 5.61 18.80 -107.50 -2.02 3.59 15 19 N -0.55 -7.82 11.23 25.25 0.28 -7.54 15 20 H 0.08 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.08 0.61 8.11 -51.93 -0.42 0.18 15 22 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 23 H 0.17 2.31 8.06 -52.48 -0.42 1.89 15 24 H 0.06 0.69 7.68 -51.93 -0.40 0.29 15 25 H 0.06 0.84 5.18 -30.94 -0.16 0.68 15 26 H 0.10 1.42 8.03 -51.93 -0.42 1.01 15 27 H 0.04 1.11 6.56 -51.93 -0.34 0.77 15 28 H 0.03 0.69 7.50 -51.93 -0.39 0.30 15 29 H 0.27 7.55 8.31 -40.82 -0.34 7.21 15 LS Contribution 264.98 15.07 3.99 3.99 Total: -1.00 -33.84 264.98 -5.91 -39.75 By element: Atomic # 1 Polarization: -0.39 SS G_CDS: -2.98 Total: -3.37 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -0.84 Total: -0.89 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: 0.53 Total: -46.61 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.09 Total: -12.81 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.36 kcal Atomic # 16 Polarization: 5.61 SS G_CDS: -2.02 Total: 3.59 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -33.84 -5.91 -39.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885959453.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.904 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.01 seconds