Wall clock time and date at job start Mon Mar 30 2020 03:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37578 * 121.02921 * 2 1 4 4 C 1.38383 * 111.26184 * 180.19237 * 3 2 1 5 5 C 1.47109 * 127.99378 * 179.82469 * 4 3 2 6 6 O 1.21632 * 119.99655 * 6.67954 * 5 4 3 7 7 N 1.34774 * 119.99809 * 186.67617 * 5 4 3 8 8 C 1.46501 * 120.00043 * 5.74536 * 7 5 4 9 9 C 1.46495 * 119.99872 * 185.75387 * 7 5 4 10 10 C 1.50701 * 109.46949 * 269.99613 * 9 7 5 11 11 H 1.08005 * 120.00053 * 0.02562 * 10 9 7 12 12 C 1.37873 * 120.00035 * 179.97438 * 10 9 7 13 13 N 1.31519 * 120.00067 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00199 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47389 * 89.99908 * 14 12 10 16 16 H 1.48500 * 109.47427 * 209.99945 * 14 12 10 17 17 H 1.48507 * 109.47110 * 329.99786 * 14 12 10 18 18 S 1.77065 * 104.00899 * 359.57321 * 4 3 2 19 19 N 1.29558 * 121.02183 * 179.68931 * 2 1 3 20 20 H 1.08998 * 109.46958 * 270.29033 * 1 2 3 21 21 H 1.08996 * 109.46873 * 30.28989 * 1 2 3 22 22 H 1.09003 * 109.47386 * 150.29025 * 1 2 3 23 23 H 1.08003 * 124.36381 * 0.02859 * 3 2 1 24 24 H 1.08998 * 109.47422 * 275.49812 * 8 7 5 25 25 H 1.08999 * 109.47008 * 35.50032 * 8 7 5 26 26 H 1.09005 * 109.46720 * 155.49707 * 8 7 5 27 27 H 1.08998 * 109.47577 * 29.99343 * 9 7 5 28 28 H 1.08995 * 109.47317 * 149.99926 * 9 7 5 29 29 H 0.97002 * 120.00484 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2162 1.1789 0.0000 4 6 3.5799 0.9442 -0.0043 5 6 4.6690 1.9331 -0.0093 6 8 4.4163 3.1166 0.1126 7 7 5.9468 1.5276 -0.1488 8 6 6.2426 0.1189 -0.4213 9 6 7.0397 2.4955 -0.0278 10 6 7.3431 3.0825 -1.3822 11 1 6.7779 2.7664 -2.2467 12 6 8.3414 4.0237 -1.5178 13 7 8.6058 4.5363 -2.6997 14 14 9.3184 4.5708 -0.0227 15 1 10.5073 3.6958 0.1392 16 1 9.7600 5.9766 -0.2072 17 1 8.4647 4.4752 1.1887 18 16 3.7109 -0.8216 0.0050 19 7 2.1747 -1.1103 0.0060 20 1 -0.3633 0.0052 1.0276 21 1 -0.3633 0.8873 -0.5183 22 1 -0.3634 -0.8926 -0.5093 23 1 1.7665 2.1609 0.0004 24 1 6.2712 -0.4346 0.5173 25 1 5.4676 -0.2972 -1.0650 26 1 7.2092 0.0403 -0.9190 27 1 6.7458 3.2920 0.6557 28 1 7.9275 1.9947 0.3582 29 1 9.3079 5.1988 -2.7951 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885959453.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:43 Heat of formation + Delta-G solvation = -10.373440 kcal Electronic energy + Delta-G solvation = -14714.960715 eV Core-core repulsion = 12150.376313 eV Total energy + Delta-G solvation = -2564.584402 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 3.47 seconds Orbital eigenvalues (eV) -41.00063 -40.14954 -36.79609 -34.77185 -32.78313 -30.97191 -30.47997 -27.76191 -26.07368 -23.69765 -21.72276 -20.39031 -19.36128 -19.15831 -17.54111 -17.20359 -16.69497 -16.25486 -15.62523 -15.40863 -14.75800 -14.42314 -14.16429 -14.00990 -13.78708 -13.46917 -13.31658 -13.26254 -12.95600 -12.44274 -12.21556 -12.04730 -11.76561 -11.49411 -11.03418 -10.81504 -10.76627 -9.64221 -9.47106 -8.33303 -6.39778 -0.74473 0.23547 0.92928 1.16430 1.34927 1.39576 1.50039 1.96916 2.16109 2.32831 3.00634 3.42092 3.91031 3.99016 4.12981 4.45733 4.47663 4.57161 4.74617 4.79142 4.81227 4.84249 4.92010 5.25712 5.41034 5.46501 5.64114 6.20546 6.43244 6.61900 7.08042 7.25943 8.83776 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.048049 B = 0.006066 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.604418 B = 4614.581087 C = 4829.860655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.085 3.915 3 C -0.114 4.114 4 C -0.288 4.288 5 C 0.576 3.424 6 O -0.575 6.575 7 N -0.595 5.595 8 C 0.060 3.940 9 C 0.225 3.775 10 C -0.541 4.541 11 H 0.027 0.973 12 C 0.011 3.989 13 N -0.946 5.946 14 Si 0.950 3.050 15 H -0.248 1.248 16 H -0.284 1.284 17 H -0.252 1.252 18 S 0.479 5.521 19 N -0.562 5.562 20 H 0.093 0.907 21 H 0.095 0.905 22 H 0.081 0.919 23 H 0.177 0.823 24 H 0.096 0.904 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.026 0.974 28 H 0.063 0.937 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.471 -13.227 8.365 18.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.150 4.150 4 C -0.421 4.421 5 C 0.363 3.637 6 O -0.456 6.456 7 N -0.325 5.325 8 C -0.084 4.084 9 C 0.103 3.897 10 C -0.579 4.579 11 H 0.045 0.955 12 C -0.187 4.187 13 N -0.586 5.586 14 Si 0.772 3.228 15 H -0.172 1.172 16 H -0.210 1.210 17 H -0.176 1.176 18 S 0.638 5.362 19 N -0.393 5.393 20 H 0.112 0.888 21 H 0.113 0.887 22 H 0.100 0.900 23 H 0.194 0.806 24 H 0.114 0.886 25 H 0.091 0.909 26 H 0.117 0.883 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.683 -14.610 8.349 19.414 hybrid contribution -0.335 2.372 -0.135 2.400 sum -10.018 -12.237 8.215 17.821 Atomic orbital electron populations 1.20658 0.84323 1.04685 1.04499 1.21185 1.00881 0.85480 1.01110 1.22109 0.90933 1.01615 1.00393 1.26798 0.98079 1.02781 1.14423 1.17264 0.82341 0.86807 0.77257 1.90755 1.83654 1.18749 1.52414 1.47783 1.05453 1.10935 1.68346 1.22250 1.03807 0.79468 1.02911 1.19502 0.85791 0.88706 0.95714 1.21527 1.18177 1.24190 0.94019 0.95472 1.25881 0.98069 0.95321 0.99419 1.70057 1.32923 1.30100 1.25472 0.85680 0.79486 0.78257 0.79359 1.17222 1.20953 1.17577 1.81654 1.02235 0.93856 1.58430 1.71921 1.10340 1.32376 1.24661 0.88834 0.88673 0.90049 0.80576 0.88572 0.90893 0.88262 0.95576 0.91869 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 10.23 71.24 0.73 -0.54 15 2 C 0.09 2.06 6.64 42.74 0.28 2.34 15 3 C -0.11 -3.23 10.11 22.15 0.22 -3.01 15 4 C -0.29 -9.40 6.42 24.63 0.16 -9.24 15 5 C 0.58 24.56 7.64 86.57 0.66 25.22 15 6 O -0.57 -29.78 16.61 -4.13 -0.07 -29.84 15 7 N -0.59 -24.25 2.86 -855.44 -2.44 -26.69 15 8 C 0.06 1.69 8.92 127.77 1.14 2.83 15 9 C 0.22 10.67 4.16 85.63 0.36 11.02 15 10 C -0.54 -31.53 9.94 25.60 0.25 -31.27 15 11 H 0.03 1.79 8.06 -2.91 -0.02 1.76 15 12 C 0.01 0.65 5.47 84.65 0.46 1.12 15 13 N -0.95 -59.43 13.96 21.45 0.30 -59.13 15 14 Si 0.95 43.25 27.47 68.60 1.88 45.13 15 15 H -0.25 -10.23 7.11 99.48 0.71 -9.53 15 16 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 17 H -0.25 -10.93 6.54 99.48 0.65 -10.28 15 18 S 0.48 11.63 18.80 -56.49 -1.06 10.57 15 19 N -0.56 -14.40 11.23 -74.04 -0.83 -15.24 15 20 H 0.09 1.19 8.14 -2.39 -0.02 1.18 15 21 H 0.09 1.19 8.11 -2.39 -0.02 1.17 15 22 H 0.08 1.19 8.14 -2.39 -0.02 1.17 15 23 H 0.18 4.68 8.06 -2.91 -0.02 4.66 15 24 H 0.10 1.98 7.68 -2.39 -0.02 1.96 15 25 H 0.07 1.88 5.18 -15.74 -0.08 1.80 15 26 H 0.10 2.76 8.03 -2.38 -0.02 2.75 15 27 H 0.03 1.34 6.56 -2.39 -0.02 1.32 15 28 H 0.06 2.61 7.50 -2.39 -0.02 2.59 15 29 H 0.27 15.67 8.31 -92.71 -0.77 14.90 15 Total: -1.00 -76.55 264.98 3.08 -73.47 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: 1.04 Total: 3.27 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 4.27 Total: -1.54 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -2.98 Total: -101.06 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.07 Total: -29.84 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.88 Total: 45.13 kcal Atomic # 16 Polarization: 11.63 SS G_CDS: -1.06 Total: 10.57 kcal Total: -76.55 3.08 -73.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885959453.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.095 kcal (2) G-P(sol) polarization free energy of solvation -76.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.47 seconds