Wall clock time and date at job start Mon Mar 30 2020 03:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37578 * 121.02929 * 2 1 4 4 C 1.38388 * 111.26304 * 180.19518 * 3 2 1 5 5 C 1.47098 * 127.99279 * 179.82753 * 4 3 2 6 6 O 1.21629 * 120.00410 * 359.70884 * 5 4 3 7 7 N 1.34782 * 119.99756 * 179.70694 * 5 4 3 8 8 C 1.46500 * 120.00045 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.47186 * 34.99977 * 8 7 5 10 10 C 1.53004 * 109.47170 * 275.00295 * 8 7 5 11 11 C 1.50694 * 109.47105 * 155.00052 * 8 7 5 12 12 H 1.08004 * 119.99940 * 95.27586 * 11 8 7 13 13 C 1.37878 * 120.00262 * 275.27561 * 11 8 7 14 14 N 1.31515 * 119.99863 * 5.45781 * 13 11 8 15 15 Si 1.86798 * 120.00097 * 185.46227 * 13 11 8 16 16 H 1.48502 * 109.46881 * 179.97438 * 15 13 11 17 17 H 1.48499 * 109.47005 * 299.99588 * 15 13 11 18 18 H 1.48492 * 109.47562 * 59.99877 * 15 13 11 19 19 S 1.77058 * 104.00562 * 359.57117 * 4 3 2 20 20 N 1.29561 * 121.02861 * 179.68900 * 2 1 3 21 21 H 1.09003 * 109.46363 * 270.28970 * 1 2 3 22 22 H 1.08994 * 109.46765 * 30.28975 * 1 2 3 23 23 H 1.09001 * 109.47092 * 150.29477 * 1 2 3 24 24 H 1.08007 * 124.36740 * 0.02869 * 3 2 1 25 25 H 0.96993 * 120.00263 * 0.02562 * 7 5 4 26 26 H 1.09000 * 109.46661 * 295.06525 * 10 8 7 27 27 H 1.08998 * 109.47207 * 55.06677 * 10 8 7 28 28 H 1.09000 * 109.47134 * 175.06550 * 10 8 7 29 29 H 0.97008 * 119.99684 * 355.06170 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2162 1.1789 0.0000 4 6 3.5800 0.9442 -0.0044 5 6 4.6690 1.9330 -0.0093 6 8 4.4112 3.1217 -0.0152 7 7 5.9526 1.5219 -0.0073 8 6 7.0372 2.5067 -0.0127 9 1 6.7404 3.3774 0.5720 10 6 7.3300 2.9349 -1.4522 11 6 8.2747 1.8943 0.5909 12 1 9.0252 1.4526 -0.0479 13 6 8.4489 1.8979 1.9586 14 7 7.4890 2.3378 2.7426 15 14 10.0484 1.2781 2.6980 16 1 9.9846 1.3870 4.1777 17 1 10.2539 -0.1416 2.3141 18 1 11.1785 2.0967 2.1904 19 16 3.7109 -0.8215 0.0050 20 7 2.1748 -1.1102 0.0060 21 1 -0.3632 0.0052 1.0277 22 1 -0.3632 0.8873 -0.5183 23 1 -0.3633 -0.8926 -0.5093 24 1 1.7665 2.1609 0.0004 25 1 6.1582 0.5740 -0.0029 26 1 7.7105 2.0822 -2.0145 27 1 6.4131 3.2970 -1.9172 28 1 8.0751 3.7305 -1.4501 29 1 6.6877 2.7259 2.3573 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885959529.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:53 Heat of formation + Delta-G solvation = -13.224181 kcal Electronic energy + Delta-G solvation = -14699.120185 eV Core-core repulsion = 12134.412165 eV Total energy + Delta-G solvation = -2564.708020 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.58528 -38.53256 -35.02139 -32.31191 -31.38251 -30.08808 -29.42398 -24.89409 -24.34480 -21.48406 -20.34572 -19.62213 -18.25093 -17.33935 -15.98560 -15.16572 -15.07592 -14.14655 -14.00447 -13.84581 -13.42635 -13.19424 -12.95821 -12.52490 -12.42774 -11.91715 -11.32473 -11.12406 -10.99316 -10.86687 -10.61178 -10.28775 -10.12003 -9.45651 -9.45140 -8.79475 -8.70344 -8.52272 -7.96645 -6.61513 -4.42999 0.55272 1.49984 2.02351 2.33479 3.32036 3.34588 3.53916 3.74981 3.93590 4.35441 4.87119 5.02905 5.24616 5.26672 5.47072 5.52439 5.70574 5.86377 6.09431 6.30195 6.45622 6.52747 6.69824 6.95707 7.15323 7.51369 7.76899 8.19184 8.48834 8.65442 8.97382 9.37914 10.76072 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.033361 B = 0.006599 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.099704 B = 4241.898539 C = 4588.931055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.083 3.917 3 C -0.128 4.128 4 C -0.241 4.241 5 C 0.572 3.428 6 O -0.547 6.547 7 N -0.691 5.691 8 C 0.235 3.765 9 H 0.056 0.944 10 C -0.141 4.141 11 C -0.609 4.609 12 H 0.059 0.941 13 C 0.030 3.970 14 N -0.885 5.885 15 Si 1.071 2.929 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.284 1.284 19 S 0.410 5.590 20 N -0.535 5.535 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.171 0.829 25 H 0.386 0.614 26 H 0.042 0.958 27 H 0.032 0.968 28 H 0.053 0.947 29 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.511 -5.556 -5.159 11.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 C -0.162 4.162 4 C -0.375 4.375 5 C 0.354 3.646 6 O -0.427 6.427 7 N -0.340 5.340 8 C 0.136 3.864 9 H 0.073 0.927 10 C -0.199 4.199 11 C -0.648 4.648 12 H 0.077 0.923 13 C -0.179 4.179 14 N -0.518 5.518 15 Si 0.898 3.102 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.210 1.210 19 S 0.566 5.434 20 N -0.366 5.366 21 H 0.096 0.904 22 H 0.097 0.903 23 H 0.093 0.907 24 H 0.189 0.811 25 H 0.219 0.781 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.079 -7.049 -3.715 10.658 hybrid contribution -1.692 1.401 -1.420 2.616 sum -8.771 -5.648 -5.135 11.627 Atomic orbital electron populations 1.20488 0.86950 1.03427 1.03178 1.20903 0.99197 0.86657 1.02228 1.21848 0.91442 1.00414 1.02540 1.27420 0.98904 1.01272 1.09893 1.17159 0.82504 0.86771 0.78117 1.90736 1.83822 1.16150 1.52016 1.47801 1.04621 1.11373 1.70204 1.18999 0.84865 0.89492 0.93007 0.92656 1.22002 0.99464 1.00150 0.98308 1.22130 1.04137 1.43872 0.94622 0.92257 1.26085 1.02988 0.94720 0.94114 1.70760 1.07603 1.34587 1.38875 0.83522 0.74086 0.76282 0.76358 1.20629 1.21131 1.21041 1.81690 1.04253 0.97619 1.59808 1.72002 1.07611 1.31673 1.25276 0.90408 0.90328 0.90722 0.81144 0.78057 0.93931 0.94846 0.92749 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.24 36.01 0.37 -0.42 15 2 C 0.08 1.18 6.64 -83.79 -0.56 0.63 15 3 C -0.13 -2.00 10.11 -39.77 -0.40 -2.40 15 4 C -0.24 -4.34 6.76 -35.93 -0.24 -4.59 15 5 C 0.57 12.47 7.77 -12.66 -0.10 12.37 15 6 O -0.55 -13.55 16.62 5.25 0.09 -13.46 15 7 N -0.69 -15.30 5.07 -56.11 -0.28 -15.59 15 8 C 0.24 5.77 2.12 -69.08 -0.15 5.63 15 9 H 0.06 1.55 6.38 -51.93 -0.33 1.21 15 10 C -0.14 -3.02 9.46 37.16 0.35 -2.67 15 11 C -0.61 -15.79 8.50 -34.44 -0.29 -16.08 15 12 H 0.06 1.50 7.81 -52.48 -0.41 1.09 15 13 C 0.03 0.81 5.45 -17.82 -0.10 0.71 15 14 N -0.89 -25.54 13.63 55.43 0.76 -24.79 15 15 Si 1.07 23.39 29.91 -169.99 -5.08 18.30 15 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 17 H -0.29 -5.90 7.11 56.52 0.40 -5.50 15 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 19 S 0.41 6.32 22.81 -107.50 -2.45 3.86 15 20 N -0.53 -8.29 11.23 25.24 0.28 -8.01 15 21 H 0.08 0.70 8.14 -51.93 -0.42 0.27 15 22 H 0.08 0.63 8.11 -51.93 -0.42 0.21 15 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 24 H 0.17 2.42 8.06 -52.48 -0.42 2.00 15 25 H 0.39 7.87 7.97 -40.82 -0.33 7.54 15 26 H 0.04 0.84 8.14 -51.93 -0.42 0.42 15 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 15 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 15 29 H 0.28 8.24 6.78 -40.82 -0.28 7.96 15 LS Contribution 273.46 15.07 4.12 4.12 Total: -1.00 -30.53 273.46 -6.79 -37.32 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -3.10 Total: 5.05 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -1.12 Total: -6.81 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.75 Total: -48.38 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.08 Total: 18.30 kcal Atomic # 16 Polarization: 6.32 SS G_CDS: -2.45 Total: 3.86 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.53 -6.79 -37.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885959529.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.097 kcal (2) G-P(sol) polarization free energy of solvation -30.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds