Wall clock time and date at job start Mon Mar 30 2020 03:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37578 * 121.02929 * 2 1 4 4 C 1.38388 * 111.26304 * 180.19518 * 3 2 1 5 5 C 1.47098 * 127.99279 * 179.82753 * 4 3 2 6 6 O 1.21629 * 120.00410 * 359.70884 * 5 4 3 7 7 N 1.34782 * 119.99756 * 179.70694 * 5 4 3 8 8 C 1.46500 * 120.00045 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.47186 * 34.99977 * 8 7 5 10 10 C 1.53004 * 109.47170 * 275.00295 * 8 7 5 11 11 C 1.50694 * 109.47105 * 155.00052 * 8 7 5 12 12 H 1.08004 * 119.99940 * 95.27586 * 11 8 7 13 13 C 1.37878 * 120.00262 * 275.27561 * 11 8 7 14 14 N 1.31515 * 119.99863 * 5.45781 * 13 11 8 15 15 Si 1.86798 * 120.00097 * 185.46227 * 13 11 8 16 16 H 1.48502 * 109.46881 * 179.97438 * 15 13 11 17 17 H 1.48499 * 109.47005 * 299.99588 * 15 13 11 18 18 H 1.48492 * 109.47562 * 59.99877 * 15 13 11 19 19 S 1.77058 * 104.00562 * 359.57117 * 4 3 2 20 20 N 1.29561 * 121.02861 * 179.68900 * 2 1 3 21 21 H 1.09003 * 109.46363 * 270.28970 * 1 2 3 22 22 H 1.08994 * 109.46765 * 30.28975 * 1 2 3 23 23 H 1.09001 * 109.47092 * 150.29477 * 1 2 3 24 24 H 1.08007 * 124.36740 * 0.02869 * 3 2 1 25 25 H 0.96993 * 120.00263 * 0.02562 * 7 5 4 26 26 H 1.09000 * 109.46661 * 295.06525 * 10 8 7 27 27 H 1.08998 * 109.47207 * 55.06677 * 10 8 7 28 28 H 1.09000 * 109.47134 * 175.06550 * 10 8 7 29 29 H 0.97008 * 119.99684 * 355.06170 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2162 1.1789 0.0000 4 6 3.5800 0.9442 -0.0044 5 6 4.6690 1.9330 -0.0093 6 8 4.4112 3.1217 -0.0152 7 7 5.9526 1.5219 -0.0073 8 6 7.0372 2.5067 -0.0127 9 1 6.7404 3.3774 0.5720 10 6 7.3300 2.9349 -1.4522 11 6 8.2747 1.8943 0.5909 12 1 9.0252 1.4526 -0.0479 13 6 8.4489 1.8979 1.9586 14 7 7.4890 2.3378 2.7426 15 14 10.0484 1.2781 2.6980 16 1 9.9846 1.3870 4.1777 17 1 10.2539 -0.1416 2.3141 18 1 11.1785 2.0967 2.1904 19 16 3.7109 -0.8215 0.0050 20 7 2.1748 -1.1102 0.0060 21 1 -0.3632 0.0052 1.0277 22 1 -0.3632 0.8873 -0.5183 23 1 -0.3633 -0.8926 -0.5093 24 1 1.7665 2.1609 0.0004 25 1 6.1582 0.5740 -0.0029 26 1 7.7105 2.0822 -2.0145 27 1 6.4131 3.2970 -1.9172 28 1 8.0751 3.7305 -1.4501 29 1 6.6877 2.7259 2.3573 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885959529.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:52 Heat of formation + Delta-G solvation = -34.228872 kcal Electronic energy + Delta-G solvation = -14700.031016 eV Core-core repulsion = 12134.412165 eV Total energy + Delta-G solvation = -2565.618851 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.99021 -40.11943 -36.93241 -34.24284 -32.84614 -31.26989 -30.91236 -26.82114 -25.86368 -23.10399 -21.84028 -21.15945 -19.79133 -19.09048 -17.51375 -16.90337 -16.42636 -15.75117 -15.59657 -15.53589 -15.19157 -14.75336 -14.13501 -13.81619 -13.38297 -13.30474 -13.08862 -12.94678 -12.59039 -12.28041 -12.14222 -11.89649 -11.80533 -11.23966 -10.84750 -10.76697 -10.67813 -9.85402 -9.65822 -8.73161 -6.55476 -0.78692 0.20366 0.82347 1.12252 1.58122 1.62724 1.83916 2.07992 2.28672 2.54506 3.20410 3.67954 3.85942 4.03746 4.42149 4.45438 4.58109 4.68612 4.70029 4.75877 4.80429 5.11779 5.22362 5.27871 5.54739 5.65329 5.83036 6.09583 6.41200 6.76950 7.23881 7.34456 8.62841 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.033361 B = 0.006599 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.099704 B = 4241.898539 C = 4588.931055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.086 3.914 3 C -0.113 4.113 4 C -0.282 4.282 5 C 0.572 3.428 6 O -0.586 6.586 7 N -0.691 5.691 8 C 0.235 3.765 9 H 0.012 0.988 10 C -0.131 4.131 11 C -0.614 4.614 12 H 0.068 0.932 13 C -0.017 4.017 14 N -0.917 5.917 15 Si 1.119 2.881 16 H -0.290 1.290 17 H -0.262 1.262 18 H -0.268 1.268 19 S 0.436 5.564 20 N -0.540 5.540 21 H 0.092 0.908 22 H 0.101 0.899 23 H 0.083 0.917 24 H 0.183 0.817 25 H 0.395 0.605 26 H 0.060 0.940 27 H 0.032 0.968 28 H 0.059 0.941 29 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.981 -7.038 -5.793 12.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 C -0.149 4.149 4 C -0.416 4.416 5 C 0.358 3.642 6 O -0.469 6.469 7 N -0.340 5.340 8 C 0.134 3.866 9 H 0.030 0.970 10 C -0.190 4.190 11 C -0.652 4.652 12 H 0.086 0.914 13 C -0.219 4.219 14 N -0.551 5.551 15 Si 0.940 3.060 16 H -0.216 1.216 17 H -0.187 1.187 18 H -0.193 1.193 19 S 0.593 5.407 20 N -0.372 5.372 21 H 0.111 0.889 22 H 0.120 0.880 23 H 0.102 0.898 24 H 0.201 0.799 25 H 0.230 0.770 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.545 -8.569 -4.382 12.230 hybrid contribution -1.666 1.844 -1.280 2.796 sum -9.211 -6.725 -5.663 12.734 Atomic orbital electron populations 1.20675 0.83605 1.05055 1.04594 1.21381 1.01175 0.85490 1.00678 1.22168 0.90595 1.01697 1.00402 1.27024 0.98667 1.02319 1.13562 1.17455 0.82958 0.87000 0.76822 1.90699 1.84439 1.18071 1.53654 1.47351 1.04706 1.11355 1.70578 1.18827 0.85091 0.88495 0.94146 0.96976 1.21891 0.99697 1.00967 0.96401 1.22401 1.04731 1.43212 0.94866 0.91373 1.27514 1.05046 0.94207 0.95152 1.70904 1.07936 1.37158 1.39148 0.82913 0.70817 0.77259 0.75042 1.21620 1.18700 1.19331 1.81559 1.04568 0.95205 1.59323 1.72086 1.07603 1.32104 1.25381 0.88945 0.88033 0.89814 0.79946 0.77010 0.92136 0.94875 0.92210 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.24 71.24 0.73 -0.56 15 2 C 0.09 2.22 6.64 42.74 0.28 2.51 15 3 C -0.11 -3.36 10.11 22.15 0.22 -3.14 15 4 C -0.28 -10.09 6.76 24.63 0.17 -9.92 15 5 C 0.57 25.53 7.77 86.57 0.67 26.20 15 6 O -0.59 -30.02 16.62 -4.12 -0.07 -30.09 15 7 N -0.69 -31.15 5.07 -449.69 -2.28 -33.43 15 8 C 0.23 11.76 2.12 44.24 0.09 11.85 15 9 H 0.01 0.72 6.38 -2.38 -0.02 0.70 15 10 C -0.13 -5.60 9.46 71.98 0.68 -4.92 15 11 C -0.61 -31.81 8.50 25.60 0.22 -31.59 15 12 H 0.07 3.36 7.81 -2.91 -0.02 3.34 15 13 C -0.02 -0.91 5.45 84.65 0.46 -0.45 15 14 N -0.92 -54.31 13.63 21.45 0.29 -54.01 15 15 Si 1.12 46.45 29.91 68.60 2.05 48.50 15 16 H -0.29 -12.43 7.11 99.48 0.71 -11.72 15 17 H -0.26 -9.87 7.11 99.48 0.71 -9.16 15 18 H -0.27 -10.37 7.11 99.48 0.71 -9.66 15 19 S 0.44 12.92 22.81 -56.49 -1.29 11.63 15 20 N -0.54 -15.58 11.23 -74.05 -0.83 -16.41 15 21 H 0.09 1.31 8.14 -2.39 -0.02 1.29 15 22 H 0.10 1.23 8.11 -2.39 -0.02 1.21 15 23 H 0.08 1.27 8.14 -2.39 -0.02 1.25 15 24 H 0.18 4.90 8.06 -2.91 -0.02 4.88 15 25 H 0.39 16.21 7.97 -92.71 -0.74 15.47 15 26 H 0.06 2.33 8.14 -2.39 -0.02 2.31 15 27 H 0.03 1.38 8.14 -2.39 -0.02 1.36 15 28 H 0.06 2.44 8.14 -2.39 -0.02 2.42 15 29 H 0.26 16.02 6.78 -92.70 -0.63 15.39 15 Total: -1.00 -66.71 273.46 1.98 -64.73 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.58 Total: 19.09 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 3.53 Total: -10.01 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -2.82 Total: -103.86 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.07 Total: -30.09 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.05 Total: 48.50 kcal Atomic # 16 Polarization: 12.92 SS G_CDS: -1.29 Total: 11.63 kcal Total: -66.71 1.98 -64.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885959529.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.502 kcal (2) G-P(sol) polarization free energy of solvation -66.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds