Wall clock time and date at job start Mon Mar 30 2020 04:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31490 * 1 3 3 Si 1.86803 * 119.99922 * 2 1 4 4 H 1.48502 * 109.47328 * 270.00675 * 3 2 1 5 5 H 1.48502 * 109.46844 * 30.00341 * 3 2 1 6 6 H 1.48500 * 109.47155 * 150.00250 * 3 2 1 7 7 C 1.38873 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00534 * 178.10529 * 7 2 1 9 9 N 1.37000 * 120.00130 * 358.10936 * 7 2 1 10 10 C 1.46557 * 124.53434 * 25.12968 * 9 7 2 11 11 C 1.54173 * 106.65607 * 178.37014 * 10 9 7 12 12 C 1.54603 * 102.78843 * 344.11592 * 11 10 9 13 13 C 1.37095 * 124.64564 * 204.97537 * 9 7 2 14 14 N 1.29376 * 125.87514 * 19.46602 * 13 9 7 15 15 C 1.46497 * 120.00152 * 5.35912 * 14 13 9 16 16 C 1.53002 * 109.46886 * 167.33245 * 15 14 13 17 17 C 1.53006 * 109.46683 * 179.97438 * 16 15 14 18 18 C 1.50705 * 109.47019 * 180.02562 * 17 16 15 19 19 O 1.20832 * 119.99562 * 359.97438 * 18 17 16 20 20 O 1.34226 * 120.00100 * 180.02562 * 18 17 16 21 21 H 0.97002 * 119.99821 * 4.99621 * 1 2 3 22 22 H 1.09003 * 110.21690 * 58.96311 * 10 9 7 23 23 H 1.08999 * 109.86947 * 297.58327 * 10 9 7 24 24 H 1.09003 * 110.74242 * 225.79772 * 11 10 9 25 25 H 1.08994 * 110.75163 * 102.43970 * 11 10 9 26 26 H 1.09002 * 110.64251 * 267.44288 * 12 11 10 27 27 H 1.08999 * 110.63821 * 144.38477 * 12 11 10 28 28 H 1.08997 * 109.46880 * 287.33382 * 15 14 13 29 29 H 1.09005 * 109.47324 * 47.33425 * 15 14 13 30 30 H 1.08997 * 109.47473 * 299.99774 * 16 15 14 31 31 H 1.08998 * 109.47356 * 60.00180 * 16 15 14 32 32 H 1.08997 * 109.47050 * 300.00117 * 17 16 15 33 33 H 1.08998 * 109.47009 * 60.00051 * 17 16 15 34 34 H 0.96699 * 117.00097 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2489 1.6178 0.0000 4 1 2.4963 2.0466 -1.4001 5 1 1.4463 2.6526 0.7001 6 1 3.5465 1.4402 0.7000 7 6 2.0093 -1.2026 -0.0005 8 1 3.0889 -1.2029 -0.0315 9 7 1.3250 -2.3888 0.0381 10 6 -0.0511 -2.5698 -0.4327 11 6 -0.3930 -4.0603 -0.2361 12 6 0.9966 -4.7058 -0.0301 13 6 1.8344 -3.5673 0.5189 14 7 2.8515 -3.6870 1.3095 15 6 3.4942 -2.4923 1.8624 16 6 4.4442 -2.9000 2.9903 17 6 5.1159 -1.6522 3.5673 18 6 6.0521 -2.0537 4.6779 19 8 6.1697 -3.2184 4.9774 20 8 6.7546 -1.1175 5.3349 21 1 -0.4850 0.8369 -0.0732 22 1 -0.1262 -2.3057 -1.4876 23 1 -0.7284 -1.9509 0.1558 24 1 -0.8791 -4.4652 -1.1237 25 1 -1.0182 -4.2000 0.6457 26 1 1.4013 -5.0577 -0.9790 27 1 0.9382 -5.5219 0.6902 28 1 4.0572 -1.9866 1.0779 29 1 2.7324 -1.8185 2.2547 30 1 3.8812 -3.4056 3.7747 31 1 5.2060 -3.5737 2.5980 32 1 5.6790 -1.1469 2.7827 33 1 4.3543 -0.9781 3.9595 34 1 7.3418 -1.4233 6.0397 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002013796.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:27 Heat of formation + Delta-G solvation = -73.039409 kcal Electronic energy + Delta-G solvation = -17205.392056 eV Core-core repulsion = 14331.170477 eV Total energy + Delta-G solvation = -2874.221579 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.09334 -38.46300 -36.14804 -34.62967 -33.08442 -31.98322 -29.89729 -27.52193 -25.41109 -24.55883 -21.88792 -20.65421 -19.95049 -18.68699 -17.91618 -16.95171 -16.26451 -16.06555 -15.26061 -14.56064 -14.26171 -14.11959 -13.49708 -12.92350 -12.64692 -12.35835 -12.14622 -11.98588 -11.53272 -11.43408 -11.31795 -11.10972 -11.01020 -10.62363 -10.45418 -10.42618 -10.30791 -10.12258 -10.01233 -9.17187 -8.80250 -7.97902 -6.93652 -6.17898 -3.77394 2.34046 3.10798 3.17866 3.20987 3.22833 3.75137 4.11389 5.05132 5.10670 5.24511 5.29756 5.35486 5.55409 5.56593 5.74759 5.88039 6.10176 6.17639 6.29989 6.36457 6.50258 6.54012 6.59012 6.63769 6.95896 7.06757 7.11958 7.25269 7.40504 7.55632 7.99816 8.06932 8.72149 9.09086 9.42540 10.11858 10.77287 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.018892 B = 0.007589 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.717071 B = 3688.754051 C = 5001.786900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.028 3.972 3 Si 0.917 3.083 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.293 4.293 8 H 0.094 0.906 9 N -0.482 5.482 10 C 0.123 3.877 11 C -0.142 4.142 12 C -0.073 4.073 13 C 0.354 3.646 14 N -0.647 5.647 15 C 0.083 3.917 16 C -0.091 4.091 17 C -0.113 4.113 18 C 0.478 3.522 19 O -0.517 6.517 20 O -0.522 6.522 21 H 0.265 0.735 22 H 0.041 0.959 23 H 0.094 0.906 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.362 -1.561 3.558 5.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.176 4.176 3 Si 0.744 3.256 4 H -0.206 1.206 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.422 4.422 8 H 0.112 0.888 9 N -0.189 5.189 10 C -0.002 4.002 11 C -0.181 4.181 12 C -0.112 4.112 13 C 0.080 3.920 14 N -0.386 5.386 15 C -0.047 4.047 16 C -0.130 4.130 17 C -0.151 4.151 18 C 0.321 3.679 19 O -0.405 6.405 20 O -0.334 6.334 21 H 0.076 0.924 22 H 0.060 0.940 23 H 0.112 0.888 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 4.473 -1.995 3.714 6.147 hybrid contribution 0.489 1.624 0.140 1.702 sum 4.962 -0.371 3.855 6.294 Atomic orbital electron populations 1.69835 1.05719 1.27153 1.49822 1.25370 0.95610 0.99271 0.97313 0.86062 0.79380 0.81796 0.78379 1.20566 1.20832 1.19363 1.19514 0.91700 0.81981 1.48965 0.88841 1.43407 1.12780 1.06846 1.55908 1.21906 0.86580 0.92219 0.99497 1.22649 0.96271 0.97850 1.01315 1.21087 0.93910 0.95683 1.00561 1.22880 0.91762 0.86700 0.90616 1.71940 1.17416 1.27646 1.21562 1.21509 0.95916 0.92614 0.94667 1.21244 0.98785 0.94231 0.98703 1.21451 0.97231 1.01997 0.94467 1.23856 0.78649 0.83347 0.82008 1.90709 1.63990 1.20381 1.65388 1.84587 1.55854 1.43157 1.49784 0.92450 0.94034 0.88835 0.91271 0.91570 0.90442 0.90403 0.93893 0.93515 0.91685 0.91591 0.87814 0.87698 0.73810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.39 10.55 55.49 0.59 -22.81 16 2 C 0.03 0.71 5.46 -17.46 -0.10 0.61 16 3 Si 0.92 19.98 29.56 -169.99 -5.02 14.95 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.29 -7.61 7.66 -15.01 -0.11 -7.73 16 8 H 0.09 2.42 5.49 -52.48 -0.29 2.13 16 9 N -0.48 -11.91 3.10 -111.29 -0.35 -12.25 16 10 C 0.12 2.76 5.88 -3.40 -0.02 2.74 16 11 C -0.14 -2.49 7.07 -25.28 -0.18 -2.67 16 12 C -0.07 -1.33 6.93 -26.58 -0.18 -1.52 16 13 C 0.35 8.17 7.62 -153.97 -1.17 7.00 16 14 N -0.65 -15.20 10.58 -57.58 -0.61 -15.81 16 15 C 0.08 1.81 4.55 -4.04 -0.02 1.79 16 16 C -0.09 -1.69 4.83 -26.73 -0.13 -1.82 16 17 C -0.11 -1.70 5.81 -27.88 -0.16 -1.86 16 18 C 0.48 6.99 8.33 36.01 0.30 7.29 16 19 O -0.52 -9.12 16.74 -18.75 -0.31 -9.43 16 20 O -0.52 -5.97 13.42 -39.25 -0.53 -6.50 16 21 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 22 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.09 2.31 6.34 -51.93 -0.33 1.98 16 24 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.04 0.96 6.16 -51.93 -0.32 0.64 16 29 H 0.05 1.11 7.26 -51.93 -0.38 0.74 16 30 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 31 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.40 2.77 9.10 45.56 0.41 3.18 16 LS Contribution 285.26 15.07 4.30 4.30 Total: -1.00 -30.56 285.26 -7.55 -38.10 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -3.83 Total: 5.61 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -1.78 Total: 3.84 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.37 Total: -50.87 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.84 Total: -15.93 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.56 -7.55 -38.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002013796.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.935 kcal (2) G-P(sol) polarization free energy of solvation -30.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds