Wall clock time and date at job start Mon Mar 30 2020 04:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31490 * 1 3 3 Si 1.86803 * 119.99922 * 2 1 4 4 H 1.48502 * 109.47328 * 270.00675 * 3 2 1 5 5 H 1.48502 * 109.46844 * 30.00341 * 3 2 1 6 6 H 1.48500 * 109.47155 * 150.00250 * 3 2 1 7 7 C 1.38873 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00534 * 178.10529 * 7 2 1 9 9 N 1.37000 * 120.00130 * 358.10936 * 7 2 1 10 10 C 1.46557 * 124.53434 * 25.12968 * 9 7 2 11 11 C 1.54173 * 106.65607 * 178.37014 * 10 9 7 12 12 C 1.54603 * 102.78843 * 344.11592 * 11 10 9 13 13 C 1.37095 * 124.64564 * 204.97537 * 9 7 2 14 14 N 1.29376 * 125.87514 * 19.46602 * 13 9 7 15 15 C 1.46497 * 120.00152 * 5.35912 * 14 13 9 16 16 C 1.53002 * 109.46886 * 167.33245 * 15 14 13 17 17 C 1.53006 * 109.46683 * 179.97438 * 16 15 14 18 18 C 1.50705 * 109.47019 * 180.02562 * 17 16 15 19 19 O 1.20832 * 119.99562 * 359.97438 * 18 17 16 20 20 O 1.34226 * 120.00100 * 180.02562 * 18 17 16 21 21 H 0.97002 * 119.99821 * 4.99621 * 1 2 3 22 22 H 1.09003 * 110.21690 * 58.96311 * 10 9 7 23 23 H 1.08999 * 109.86947 * 297.58327 * 10 9 7 24 24 H 1.09003 * 110.74242 * 225.79772 * 11 10 9 25 25 H 1.08994 * 110.75163 * 102.43970 * 11 10 9 26 26 H 1.09002 * 110.64251 * 267.44288 * 12 11 10 27 27 H 1.08999 * 110.63821 * 144.38477 * 12 11 10 28 28 H 1.08997 * 109.46880 * 287.33382 * 15 14 13 29 29 H 1.09005 * 109.47324 * 47.33425 * 15 14 13 30 30 H 1.08997 * 109.47473 * 299.99774 * 16 15 14 31 31 H 1.08998 * 109.47356 * 60.00180 * 16 15 14 32 32 H 1.08997 * 109.47050 * 300.00117 * 17 16 15 33 33 H 1.08998 * 109.47009 * 60.00051 * 17 16 15 34 34 H 0.96699 * 117.00097 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2489 1.6178 0.0000 4 1 2.4963 2.0466 -1.4001 5 1 1.4463 2.6526 0.7001 6 1 3.5465 1.4402 0.7000 7 6 2.0093 -1.2026 -0.0005 8 1 3.0889 -1.2029 -0.0315 9 7 1.3250 -2.3888 0.0381 10 6 -0.0511 -2.5698 -0.4327 11 6 -0.3930 -4.0603 -0.2361 12 6 0.9966 -4.7058 -0.0301 13 6 1.8344 -3.5673 0.5189 14 7 2.8515 -3.6870 1.3095 15 6 3.4942 -2.4923 1.8624 16 6 4.4442 -2.9000 2.9903 17 6 5.1159 -1.6522 3.5673 18 6 6.0521 -2.0537 4.6779 19 8 6.1697 -3.2184 4.9774 20 8 6.7546 -1.1175 5.3349 21 1 -0.4850 0.8369 -0.0732 22 1 -0.1262 -2.3057 -1.4876 23 1 -0.7284 -1.9509 0.1558 24 1 -0.8791 -4.4652 -1.1237 25 1 -1.0182 -4.2000 0.6457 26 1 1.4013 -5.0577 -0.9790 27 1 0.9382 -5.5219 0.6902 28 1 4.0572 -1.9866 1.0779 29 1 2.7324 -1.8185 2.2547 30 1 3.8812 -3.4056 3.7747 31 1 5.2060 -3.5737 2.5980 32 1 5.6790 -1.1469 2.7827 33 1 4.3543 -0.9781 3.9595 34 1 7.3418 -1.4233 6.0397 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002013796.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:26 Heat of formation + Delta-G solvation = -93.639523 kcal Electronic energy + Delta-G solvation = -17206.285344 eV Core-core repulsion = 14331.170477 eV Total energy + Delta-G solvation = -2875.114867 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.25114 -40.20018 -37.25273 -36.19992 -34.93940 -33.52192 -31.69853 -29.05693 -27.16932 -26.22104 -23.38562 -22.14940 -21.38667 -20.47529 -19.04306 -18.78369 -17.58709 -17.29806 -16.86431 -16.30644 -15.92391 -15.66292 -15.18422 -14.32213 -14.12566 -13.89493 -13.76934 -13.57539 -13.18844 -12.93830 -12.67081 -12.63594 -12.53786 -12.23938 -12.12067 -12.01122 -11.75996 -11.71303 -11.60445 -10.95381 -10.63391 -9.82679 -8.83553 -8.10039 -5.75652 1.19031 1.37222 1.41776 1.52063 1.95270 2.12939 2.30244 3.16282 3.48174 3.56145 3.96386 4.04413 4.07468 4.24019 4.32616 4.54725 4.62968 4.72240 4.78790 4.90061 4.95616 5.03914 5.15453 5.26877 5.36709 5.43559 5.48672 5.54642 5.61206 5.71601 6.17348 6.81289 7.00158 7.24890 7.53126 8.25060 8.83509 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.018892 B = 0.007589 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.717071 B = 3688.754051 C = 5001.786900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.017 4.017 3 Si 0.975 3.025 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.258 1.258 7 C -0.310 4.310 8 H 0.087 0.913 9 N -0.503 5.503 10 C 0.124 3.876 11 C -0.124 4.124 12 C -0.067 4.067 13 C 0.339 3.661 14 N -0.664 5.664 15 C 0.090 3.910 16 C -0.078 4.078 17 C -0.111 4.111 18 C 0.491 3.509 19 O -0.552 6.552 20 O -0.511 6.511 21 H 0.264 0.736 22 H 0.027 0.973 23 H 0.065 0.935 24 H 0.105 0.895 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.034 0.966 29 H 0.021 0.979 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.024 -1.696 3.795 6.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.217 4.217 3 Si 0.800 3.200 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.182 1.182 7 C -0.439 4.439 8 H 0.104 0.896 9 N -0.212 5.212 10 C -0.001 4.001 11 C -0.163 4.163 12 C -0.106 4.106 13 C 0.066 3.934 14 N -0.401 5.401 15 C -0.040 4.040 16 C -0.116 4.116 17 C -0.149 4.149 18 C 0.335 3.665 19 O -0.443 6.443 20 O -0.324 6.324 21 H 0.074 0.926 22 H 0.045 0.955 23 H 0.083 0.917 24 H 0.123 0.877 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.052 0.948 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 5.162 -2.134 3.971 6.853 hybrid contribution 0.316 1.661 0.096 1.694 sum 5.477 -0.473 4.067 6.839 Atomic orbital electron populations 1.69995 1.06815 1.27659 1.50643 1.26126 0.96425 1.02115 0.97024 0.85165 0.78596 0.77829 0.78443 1.20185 1.20839 1.18192 1.19662 0.91716 0.83114 1.49362 0.89552 1.43668 1.13659 1.07093 1.56736 1.21811 0.85114 0.95340 0.97834 1.22607 0.96233 0.93926 1.03518 1.21220 0.93234 0.94535 1.01632 1.23807 0.91819 0.87875 0.89927 1.72010 1.17865 1.28416 1.21858 1.21435 0.95523 0.91851 0.95180 1.21033 0.97792 0.95673 0.97109 1.21344 0.97830 1.00388 0.95368 1.23537 0.78334 0.82935 0.81649 1.90709 1.65254 1.21810 1.66485 1.84516 1.55719 1.41938 1.50247 0.92606 0.95493 0.91674 0.87687 0.90503 0.88626 0.88435 0.94841 0.96112 0.92929 0.92228 0.86181 0.86700 0.71128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.07 10.55 21.65 0.23 -48.84 16 2 C -0.02 -0.87 5.46 84.90 0.46 -0.40 16 3 Si 0.98 41.06 29.56 68.60 2.03 43.09 16 4 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 7 C -0.31 -16.38 7.66 84.04 0.64 -15.73 16 8 H 0.09 4.56 5.49 -2.91 -0.02 4.54 16 9 N -0.50 -25.12 3.10 -506.02 -1.57 -26.69 16 10 C 0.12 5.57 5.88 86.77 0.51 6.08 16 11 C -0.12 -4.09 7.07 31.54 0.22 -3.86 16 12 C -0.07 -2.30 6.93 30.69 0.21 -2.09 16 13 C 0.34 15.54 7.62 138.09 1.05 16.59 16 14 N -0.66 -31.18 10.58 -336.09 -3.56 -34.74 16 15 C 0.09 3.98 4.55 86.38 0.39 4.38 16 16 C -0.08 -2.86 4.83 30.60 0.15 -2.71 16 17 C -0.11 -3.20 5.81 29.85 0.17 -3.02 16 18 C 0.49 13.49 8.33 71.24 0.59 14.09 16 19 O -0.55 -18.88 16.74 21.95 0.37 -18.51 16 20 O -0.51 -10.26 13.42 -51.38 -0.69 -10.95 16 21 H 0.26 13.58 8.32 -92.71 -0.77 12.81 16 22 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.07 3.29 6.34 -2.39 -0.02 3.27 16 24 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 25 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.10 2.97 8.14 -2.39 -0.02 2.96 16 27 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 28 H 0.03 1.52 6.16 -2.39 -0.01 1.51 16 29 H 0.02 1.01 7.26 -2.38 -0.02 0.99 16 30 H 0.05 2.04 8.10 -2.39 -0.02 2.02 16 31 H 0.06 2.25 8.10 -2.39 -0.02 2.23 16 32 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.43 4.56 9.10 -74.06 -0.67 3.89 16 Total: -1.00 -66.75 285.26 1.66 -65.10 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.44 Total: 18.25 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 4.41 Total: 13.31 kcal Atomic # 7 Polarization: -105.38 SS G_CDS: -4.90 Total: -110.28 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.32 Total: -29.46 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -66.75 1.66 -65.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002013796.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.543 kcal (2) G-P(sol) polarization free energy of solvation -66.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds